FC872022

Overview
NameFC872022
Unique NameFC872022
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length733
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1041 contig Ccv1_Contig1041:12..744. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of FC872022 vs. ExPASy Swiss-Prot
Match: RH57_ARATH (DEAD-box ATP-dependent RNA helicase 57 OS=Arabidopsis thaliana GN=RH57 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.310e-12
Identity = 32/44 (72.73%), Postives = 38/44 (86.36%), Query Frame = 2
Query:    2 RNIANLMKASGCEVPSWILTLPKLKGKKHRPRRESISTKPKDDE 133
            RNIAN M +SGCEVPSWI++L K K +KHRPRR+SISTKPK D+
Sbjct:  493 RNIANTMMSSGCEVPSWIMSLKKKKWRKHRPRRDSISTKPKADK 536          
The following BLAST results are available for this feature:
BLAST of FC872022 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RH57_ARATH6.310e-1272.73DEAD-box ATP-dependent RNA helicase 57 OS=Arabidop... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAB2BE09ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB2BE09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872022 ID=FC872022; Name=FC872022; organism=Citrus clementina; type=EST; length=733bp
GCGTAACATAGCTAATTTAATGAAAGCCTCTGGTTGTGAGGTTCCATCCT
GGATCTTGACCTTGCCAAAACTGAAGGGTAAGAAGCATCGGCCACGAAGA
GAATCAATTTCAACCAAACCAAAAGATGATGAAGAGTAAAGCTGCAAATC
ACCGTCATTTATCTTGAAAGAGTTTTCTGTTGTTGGCTTTATTTGTTTCC
TTTATCAAGTCCATAGAAACTAGTACTGTTCCAGTTCCAGACACTGTTTG
GGTTCTCATTGGTTCAATAAATTTTTGACATCCAGCCAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
CTTGGGGGCCCCCCCGGCCCCTTCCAACTTAAAACCCGAAAAGTTTTTGG
GGGGGGCCCCAATTTCGGCCCCTTTGGGCAATTCCCCCTAAAGGGGGGCC
AAATAAAATTTCCGGGGCCGCCTTTTAAAACCGCCGGGGGGGGAAAACCC
GGGGGTTTCCCCATTTAATCCCCTTGGAACCACCCCCCCTTTTCCCCGGG
GGGGAAAAAACAAAAAAGCCCCCCCCCATTCCCCCTCCCAAAATTTGGCC
CCCCCGAAGGGGAAAGGGAAATTTGAACCCTTAAATTTTTTGTAAAATTC
CCGGTAAATTTTTGGTAAATCCCCCCCTTTTTT
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