FC872024

Overview
NameFC872024
Unique NameFC872024
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length810
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig526 contig Ccv1_Contig526:49..858. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872024 vs. ExPASy Swiss-Prot
Match: ARPC3_HUMAN (Actin-related protein 2/3 complex subunit 3 OS=Homo sapiens GN=ARPC3 PE=1 SV=3)

HSP 1 Score: 140.584 bits (353), Expect = 9.991e-33
Identity = 66/146 (45.21%), Postives = 97/146 (66.44%), Query Frame = 3
Query:  225 KKPYKGSCPCF*SRTDIVDEAITFFRANVFFINFDIKSSADKLLIYLTFYINVALKRLEGRKTLAEGTKAIINLGLEKVPVPGEPNFPFPGLFALPQSQKEAELFRNYLKQIKEETSGRLLSVAYRP-NGTPNKWWLAFAKRKFMN 659
            +  +KG  P     TDIVDEAI +F+ANVFF N++IK+ AD+ LIY+T YI+  LK+L+   + ++G K +  LG+   P+PGEP FP   ++A P +++E E+ R YL+Q+++ET  RL    + P N  P+KWW  F KR+FMN
Sbjct:   25 RSQFKGPAPRETKDTDIVDEAIYYFKANVFFKNYEIKNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAKPANKQEDEVMRAYLQQLRQETGLRLCEKVFDPQNDKPSKWWTCFVKRQFMN 170          
BLAST of FC872024 vs. ExPASy Swiss-Prot
Match: ARPC3_BOVIN (Actin-related protein 2/3 complex subunit 3 OS=Bos taurus GN=ARPC3 PE=1 SV=3)

HSP 1 Score: 140.584 bits (353), Expect = 9.991e-33
Identity = 66/146 (45.21%), Postives = 97/146 (66.44%), Query Frame = 3
Query:  225 KKPYKGSCPCF*SRTDIVDEAITFFRANVFFINFDIKSSADKLLIYLTFYINVALKRLEGRKTLAEGTKAIINLGLEKVPVPGEPNFPFPGLFALPQSQKEAELFRNYLKQIKEETSGRLLSVAYRP-NGTPNKWWLAFAKRKFMN 659
            +  +KG  P     TDIVDEAI +F+ANVFF N++IK+ AD+ LIY+T YI+  LK+L+   + ++G K +  LG+   P+PGEP FP   ++A P +++E E+ R YL+Q+++ET  RL    + P N  P+KWW  F KR+FMN
Sbjct:   25 RSQFKGPAPRETKDTDIVDEAIYYFKANVFFKNYEIKNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAKPANKQEDEVMRAYLQQLRQETGLRLCEKVFDPQNDKPSKWWTCFVKRQFMN 170          
BLAST of FC872024 vs. ExPASy Swiss-Prot
Match: ARPC3_MOUSE (Actin-related protein 2/3 complex subunit 3 OS=Mus musculus GN=Arpc3 PE=1 SV=3)

HSP 1 Score: 140.198 bits (352), Expect = 1.305e-32
Identity = 66/146 (45.21%), Postives = 97/146 (66.44%), Query Frame = 3
Query:  225 KKPYKGSCPCF*SRTDIVDEAITFFRANVFFINFDIKSSADKLLIYLTFYINVALKRLEGRKTLAEGTKAIINLGLEKVPVPGEPNFPFPGLFALPQSQKEAELFRNYLKQIKEETSGRLLSVAYRP-NGTPNKWWLAFAKRKFMN 659
            +  +KG  P     TDIVDEAI +F+ANVFF N++IK+ AD+ LIY+T YI+  LK+L+   + ++G K +  LG+   P+PGEP FP   ++A P S++E E+ R YL+Q+++ET  RL    + P +  P+KWW  F KR+FMN
Sbjct:   25 RSQFKGPAPRETKDTDIVDEAIYYFKANVFFKNYEIKNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGFPLNAIYAKPASKQEDEMMRAYLQQLRQETGLRLCEKVFDPQSDKPSKWWTCFVKRQFMN 170          
BLAST of FC872024 vs. ExPASy Swiss-Prot
Match: ARPC3_CAEEL (Probable actin-related protein 2/3 complex subunit 3 OS=Caenorhabditis elegans GN=arx-5 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.113e-26
Identity = 59/144 (40.97%), Postives = 90/144 (62.50%), Query Frame = 3
Query:  234 YKGSCPCF*SRTDIVDEAITFFRANVFFINFDIKSSADKLLIYLTFYINVALKRLEGRKTLAEGTKAIINLGLEK-VPVPGEPNFPFPGLFALPQSQKEAELFRNYLKQIKEETSGRLLSVAY-RPNGTPNKWWLAFAKRKFMN 659
            +KG  P   ++ DI+DEA+T+F+ N+FF  F+IK  AD+ +IYL FYI   L++L+       G K +  L L   +P+PGE  FP   ++  PQS+ + +  R YL+QI++E   RL  +A+  P   P+KWWL FA+R+FM+
Sbjct:   31 FKGPAPQT-NQDDIIDEALTYFKPNIFFREFEIKGPADRTMIYLIFYITECLRKLQKSPNKIAGQKDLHALALSHLLPIPGENGFPLNSMYKAPQSKPDEDEMRAYLQQIRQEIGARLCDLAFPDPQDRPSKWWLCFARRRFMD 173          
BLAST of FC872024 vs. ExPASy Swiss-Prot
Match: ARPC3_SCHPO (Actin-related protein 2/3 complex subunit 3 OS=Schizosaccharomyces pombe GN=arc3 PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.001e-24
Identity = 63/149 (42.28%), Postives = 87/149 (58.39%), Query Frame = 3
Query:  216 TSFKKPYKGSCPCF*SRTDIVDEAITFFRANVFFINFDIKSSADKLLIYLTFYINVALKRLEGRKTLAEGTKAIINLGLEKVPVPGEPNFPFPGLFALPQSQKEAELFRNYLKQIKEETSGRLLSVAY-RPNGTPNKWWLAFAKRKFMN 659
            T F+ P   + P   S+ DI+DE I  FRAN FF NF+IK  AD+ LIY T +I+  L R+ G     +  + + +L LE   +PG   FP   L+A P S ++AE+ R YL Q ++E + RLLS  Y      P+KWW  F+KR+FMN
Sbjct:   27 TKFRGP---AYPADESQMDIIDECIGLFRANCFFRNFEIKGPADRTLIYGTLFISECLGRVNG-LNYRDAERQLNSLALENFSIPGSAGFPLNALYAPPLSPQDAEIMRTYLTQFRQELAYRLLSHVYATEKDHPSKWWTCFSKRRFMN 171          
BLAST of FC872024 vs. ExPASy Swiss-Prot
Match: ARPC3_YEAST (Actin-related protein 2/3 complex subunit 3 OS=Saccharomyces cerevisiae GN=ARC18 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.026e-23
Identity = 53/134 (39.55%), Postives = 80/134 (59.70%), Query Frame = 3
Query:  270 DIVDEAITFFRANVFFINFDIKSSADKLLIYLTFYINVALKRLEGRKTLAEGTKAIINLGLEKVPVPGEPNFPFPGLFALP-QSQKEAELFRNYLKQIKEETSGRLLSVAYRPNGT---PNKWWLAFAKRKFMN 659
            DI+DE +  FRAN FF NF+IKS AD++LIY   +IN  L  L+   +  E  K + N+ L+   +PG P FP   ++ +P Q     +L + Y++Q ++E + RLL   Y    +   P+K+WLAF +R+FMN
Sbjct:   42 DIIDECLDLFRANSFFKNFEIKSPADRVLIYGILFINDCLAHLKITTSFNEAVKVLTNVALDNFTLPGTPGFPLNNVYQVPVQDHNSMDLLKTYIQQFRQELAMRLLERVYSSTDSKEYPSKFWLAFTRRRFMN 175          

HSP 2 Score: 25.0238 bits (53), Expect = 1.026e-23
Identity = 13/37 (35.14%), Postives = 20/37 (54.05%), Query Frame = 1
Query:  160 YHSSFVDEEGVTKACG-CPLLPLKSHIKGPAPASDQE 267
            YHS+F  +    +  G   LLPL +  +GPA  S+ +
Sbjct:    4 YHSTFPVDPNTDRMVGNFALLPLNTKFRGPAYPSNSD 40          
BLAST of FC872024 vs. ExPASy Swiss-Prot
Match: ARPC3_DICDI (Actin-related protein 2/3 complex subunit 3 OS=Dictyostelium discoideum GN=arcC PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.088e-22
Identity = 55/153 (35.95%), Postives = 86/153 (56.21%), Query Frame = 3
Query:  207 LPFTSFKKPYKGSCPCF*SRT-DIVDEAITFFRANVFFINFDIKSSADKLLIYLTFYINVALKRLEGRKTLAEGTKAIINLGLEKVPVPGEPNFPFPGLFALPQSQKEAELFRNYLKQIKEETSGRLLSVAYRPN-GTPNKWWLAFAKRKFMN 659
            +P    K  +KG  P   + + DI+DEA+  F+AN+ F NF+++ + D++LIYLT YI   L ++      A+  KA+  +  E+  +PGE  FP  GL  +P ++  A+  R Y  Q++ E   RL    Y  +    NKWW+ F+KRKF+N
Sbjct:   20 VPILPLKTTHKGPAPKGDANSVDIIDEALDLFKANILFRNFEVQGNGDRVLIYLTLYITKCLLKI-APMNKADAEKALFLIAQEQFSIPGESAFPLGGLVTVPNTRDAADTLRQYFTQLRLELGVRLCQRVYAVDPSKANKWWICFSKRKFLN 171          
The following BLAST results are available for this feature:
BLAST of FC872024 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
ARPC3_HUMAN9.991e-3345.21Actin-related protein 2/3 complex subunit 3 OS=Hom... [more]
ARPC3_BOVIN9.991e-3345.21Actin-related protein 2/3 complex subunit 3 OS=Bos... [more]
ARPC3_MOUSE1.305e-3245.21Actin-related protein 2/3 complex subunit 3 OS=Mus... [more]
ARPC3_CAEEL3.113e-2640.97Probable actin-related protein 2/3 complex subunit... [more]
ARPC3_SCHPO1.001e-2442.28Actin-related protein 2/3 complex subunit 3 OS=Sch... [more]
ARPC3_YEAST1.026e-2339.55Actin-related protein 2/3 complex subunit 3 OS=Sac... [more]
ARPC3_DICDI2.088e-2235.95Actin-related protein 2/3 complex subunit 3 OS=Dic... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAB2BE11ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB2BE11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872024 ID=FC872024; Name=FC872024; organism=Citrus clementina; type=EST; length=810bp
GGGGGAGCGAATGTGACACCTTCAAATCTTCGGATCCAACCAACAGAGAA
AACATATCATTTTTCTTTTGCCGAAAAATTGATACTTGCAGGAAAATTAG
GGTTTTGCAAATTGGGGCGAAAACAGATTCTTTTTAGCTCCAGTCATCGA
GAAATGGTTTATCATTCCAGTTTTGTTGATGAGGAAGGAGTTACTAAAGC
TTGTGGTTGCCCTTTACTTCCTTTAAAAAGCCATATAAAGGGTCCTGCCC
CTGCTTCTGATCAAGAACTGATATTGTTGATGAGGCAATCACGTTCTTCA
GGGCCAATGTGTTCTTTATAAACTTTGATATTAAGAGCTCGGCTGATAAG
CTGCTAATATATTTGACATTCTACATAAATGTGGCTTTGAAAAGACTTGA
GGGTCGTAAAACTTTGGCTGAGGGAACCAAGGCAATCATTAACTTGGGCT
TGGAAAAGGTTCCTGTGCCAGGAGAGCCTAATTTTCCTTTTCCAGGTCTC
TTTGCTCTTCCTCAATCTCAAAAGGAAGCAGAGCTATTCAGGAATTATCT
GAAGCAGATAAAAGAGGAAACAAGTGGGAGACTGTTGAGTGTTGCATATA
GACCTAACGGCACACCAAATAAATGGTGGTTGGCATTTGCCAAGAGGAAA
TTCATGAACATCATTGTTCCTTGAATACAGTTTGTTGTGCATCCATCCAA
CTTGTAGCTTCTGAAATTCTTATATATGCTCTAAAAAATATGATTCCTTT
TCATTGACAGTAATAAAAATCTGACTTGAGGACAAAAAAAAAAAATAATA
AAAAAAAAAA
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