FC872027

Overview
NameFC872027
Unique NameFC872027
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9831 contig Ccv1_Contig9831:1..698. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872027 vs. ExPASy Swiss-Prot
Match: GH39_ARATH (Putative indole-3-acetic acid-amido synthetase GH3.9 OS=Arabidopsis thaliana GN=GH3.9 PE=2 SV=1)

HSP 1 Score: 320.857 bits (821), Expect = 4.203e-87
Identity = 161/231 (69.70%), Postives = 191/231 (82.68%), Query Frame = 1
Query:    4 SWKGILCQLWPRAKYIEAVVTGSMAQYIPSLEYYIAGKLPLVGTMYASSECYFGVNLKPLSNPADFSFTLLPNMCYFEFLPLEGENGTLFSIEFNEEEEVPNDKLVDLGHVRAGHYYELVVTTFAGLNRYRIGDVLQVTGFYNRAPQFLFICRRNVVLSIDYDKTHE*DLHKSVTIAKNLLEPYSALLVQYTSYADTSTVPGHYVLYWEIQIVDSPALPLDHQKVLEECCI 696
            SWKGILCQLWP+AK+IEAVVTGSMAQYIP+LE++  GK+PLV  MYASSE YFGVN++PLS P+D  FTLLPNMCYFEF+PL G+NGTL S + +++E+VP DK+VDL +V+ G YYELVVTTFAGL RYRIGDVLQV GFYN APQF FICRRNVVLSID DKT+E DLH+S+T+AK  L   +A L +YTSYADTS+VPGHYVL+WEIQ    P       K++EECC+
Sbjct:  281 SWKGILCQLWPKAKFIEAVVTGSMAQYIPALEFFSQGKIPLVCPMYASSETYFGVNVEPLSKPSDVVFTLLPNMCYFEFIPL-GKNGTL-SFDLDDDEQVPCDKVVDLVNVKLGRYYELVVTTFAGLYRYRIGDVLQVAGFYNGAPQFRFICRRNVVLSIDLDKTNEEDLHRSITLAKKKLGS-NAFLAEYTSYADTSSVPGHYVLFWEIQGHLEP-------KLMEECCV 501          
BLAST of FC872027 vs. ExPASy Swiss-Prot
Match: GH311_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.11 OS=Oryza sativa subsp. japonica GN=GH3.11 PE=2 SV=1)

HSP 1 Score: 303.138 bits (775), Expect = 9.069e-82
Identity = 155/232 (66.81%), Postives = 180/232 (77.59%), Query Frame = 1
Query:    1 GSWKGILCQLWPRAKYIEAVVTGSMAQYIPSLEYYIAGKLPLVGTMYASSECYFGVNLKPLSNPADFSFTLLPNMCYFEFLPLEGENGTLFSIEFNEEEEVPNDKLVDLGHVRAGHYYELVVTTFAGLNRYRIGDVLQVTGFYNRAPQFLFICRRNVVLSIDYDKTHE*DLHKSVTIAKNLLEPYSALLVQYTSYADTSTVPGHYVLYWEIQIV-DSPALPLDHQKVLEECC 693
            GSWKGIL +LWP  KYIEAV+TG+MAQYIP LE+Y  G +P V TMYASSE YFGVNL PL +PAD S+T+LPNM YFEF+PLE  +G   +   + EE + NDKLV L  V+ G YYELVVTTF+GL RYR+GDVLQVTGFYNRAPQF FICRRNV+LSID DKT+E DLH SVT AK +LE  + LL++YTSY D STVPGHYVL+WEI+   D    PLD Q +LE CC
Sbjct:  282 GSWKGILGRLWPNVKYIEAVLTGTMAQYIPMLEFYGGGAIPFVCTMYASSESYFGVNLSPLCSPADVSYTILPNMAYFEFIPLE--DGLRLT---DHEEVIENDKLVSLVDVKVGCYYELVVTTFSGLYRYRVGDVLQVTGFYNRAPQFKFICRRNVILSIDSDKTNEEDLHNSVTTAKKILENQNYLLLEYTSYTDISTVPGHYVLFWEIKSTHDERPAPLDAQ-LLESCC 507          
BLAST of FC872027 vs. ExPASy Swiss-Prot
Match: GH317_ARATH (Indole-3-acetic acid-amido synthetase GH3.17 OS=Arabidopsis thaliana GN=GH3.17 PE=1 SV=1)

HSP 1 Score: 276.944 bits (707), Expect = 6.960e-74
Identity = 137/237 (57.81%), Postives = 179/237 (75.53%), Query Frame = 1
Query:    4 SWKGILCQLWPRAKYIEAVVTGSMAQYIPSLEYYIAGKLPLVGTMYASSECYFGVNLKPLSNPADFSFTLLPNMCYFEFLPLEGENG-----TLFSIEFNEEEEVPNDKLVDLGHVRAGHYYELVVTTFAGLNRYRIGDVLQVTGFYNRAPQFLFICRRNVVLSIDYDKTHE*DLHKSVTIAK--NLLEPYSALLVQYTSYADTSTVPGHYVLYWEIQIVDSPALPLDHQKVLEECC 693
            SW+GIL ++WP+AKY+E +VTGSMAQYIP+LE+Y +G LPLV TMYASSECYFG+NL PL +PAD S+TLLPNM YFEFLP++ ++         S   ++++ +  D +V+L +V  G YYE+V+TTF GL RYR+GD+L+VTGF+N+APQF F+ RRNVVLSID DKT E DL  +VT AK  +L  P S LL +YTSYADTS++PGHYVL+WE++   S   P    K +E+CC
Sbjct:  285 SWEGILRRIWPKAKYVEVIVTGSMAQYIPTLEFY-SGGLPLVSTMYASSECYFGINLNPLCDPADVSYTLLPNMAYFEFLPVDDKSHEEIHFATHSNTDDDDDALKEDLIVNLVNVEVGQYYEIVITTFTGLYRYRVGDILKVTGFHNKAPQFRFVQRRNVVLSIDTDKTSEEDLLNAVTQAKLNHLQHPSSLLLTEYTSYADTSSIPGHYVLFWELKPRHSNDPPKLDDKTMEDCC 520          
BLAST of FC872027 vs. ExPASy Swiss-Prot
Match: GH35_ARATH (Indole-3-acetic acid-amido synthetase GH3.5 OS=Arabidopsis thaliana GN=GH3.5 PE=1 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 5.515e-71
Identity = 132/232 (56.90%), Postives = 171/232 (73.71%), Query Frame = 1
Query:    4 SWKGILCQLWPRAKYIEAVVTGSMAQYIPSLEYYIAGKLPLVGTMYASSECYFGVNLKPLSNPADFSFTLLPNMCYFEFLPLEGENGTLFSIEFNEE-EEVPNDKLVDLGHVRAGHYYELVVTTFAGLNRYRIGDVLQVTGFYNRAPQFLFICRRNVVLSIDYDKTHE*DLHKSVTIAKNLLEPYSALLVQYTSYADTSTVPGHYVLYWEIQIVDSPALPLDHQKVLEECCI 696
            SW+GI+ +LWP  KY++ +VTG+M+QYIP+L+YY  G LPLV TMYASSECYFGVNL+PL  P++ S+TL+P+M YFEFLP+   NG   SI   +   E    +LVDL  V+ G  YELVVTT+AGL RYR+GD+L+VTGF N+APQF FICR+NVVLSID DKT E +L  +V  A   L P+ A L +YTSYADTS++PGHYVL+WE+ +  +  +P     V E+CC+
Sbjct:  294 SWQGIITRLWPNTKYVDVIVTGTMSQYIPTLDYYSNG-LPLVCTMYASSECYFGVNLRPLCKPSEVSYTLIPSMAYFEFLPVHRNNGVTNSINLPKALTEKEQQELVDLVDVKLGQEYELVVTTYAGLCRYRVGDLLRVTGFKNKAPQFSFICRKNVVLSIDSDKTDEVELQNAVKNAVTHLVPFDASLSEYTSYADTSSIPGHYVLFWELCLDGNTPIP---PSVFEDCCL 521          
BLAST of FC872027 vs. ExPASy Swiss-Prot
Match: GH36_ARATH (Indole-3-acetic acid-amido synthetase GH3.6 OS=Arabidopsis thaliana GN=GH3.6 PE=1 SV=1)

HSP 1 Score: 266.159 bits (679), Expect = 1.229e-70
Identity = 132/232 (56.90%), Postives = 168/232 (72.41%), Query Frame = 1
Query:    4 SWKGILCQLWPRAKYIEAVVTGSMAQYIPSLEYYIAGKLPLVGTMYASSECYFGVNLKPLSNPADFSFTLLPNMCYFEFLPLEGENGTLFSIEFNEE-EEVPNDKLVDLGHVRAGHYYELVVTTFAGLNRYRIGDVLQVTGFYNRAPQFLFICRRNVVLSIDYDKTHE*DLHKSVTIAKNLLEPYSALLVQYTSYADTSTVPGHYVLYWEIQIVDSPALPLDHQKVLEECCI 696
            SW+GI+ +LWP  KY++ +VTG+M+QYIP+L+YY  G LPLV TMYASSECYFGVNL+PL  P++ S+TL+PNM YFEFLP+   +G   SI   +   E    +LVDL  V+ G  YELVVTT+AGL RYR+GDVL V GF N APQF FICR+NVVLSID DKT E +L  +V  A   L P+ A L +YTSYADTS++PGHYVL+WE+ +  +  +P     V E+CC+
Sbjct:  294 SWQGIITRLWPNTKYVDVIVTGTMSQYIPTLDYYSNG-LPLVCTMYASSECYFGVNLRPLCKPSEVSYTLIPNMAYFEFLPVHRNSGVTSSISLPKALTEKEQQELVDLVDVKLGQEYELVVTTYAGLYRYRVGDVLSVAGFKNNAPQFSFICRKNVVLSIDSDKTDEVELQNAVKNAVTHLVPFDASLSEYTSYADTSSIPGHYVLFWELCLNGNTPIP---PSVFEDCCL 521          
BLAST of FC872027 vs. ExPASy Swiss-Prot
Match: GH31_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.1 OS=Oryza sativa subsp. japonica GN=GH3.1 PE=2 SV=1)

HSP 1 Score: 259.996 bits (663), Expect = 8.805e-69
Identity = 128/231 (55.41%), Postives = 167/231 (72.29%), Query Frame = 1
Query:    4 SWKGILCQLWPRAKYIEAVVTGSMAQYIPSLEYYIAGKLPLVGTMYASSECYFGVNLKPLSNPADFSFTLLPNMCYFEFLPLEGENGTLFSIEFNEEEEVPNDKLVDLGHVRAGHYYELVVTTFAGLNRYRIGDVLQVTGFYNRAPQFLFICRRNVVLSIDYDKTHE*DLHKSVTIAKNLLEPYSALLVQYTSYADTSTVPGHYVLYWEIQIVDSPALPLDHQKVLEECCI 696
            SW+GI+ +LWPR KYI+ +VTG+M+QYIP+LE+Y  G LPL  TMYASSECYFG+NL P+  P+D ++TL+P MCY+EFLP+   N T          E  +  LVDL  V+ GH YELVVTT++GL RYR+GDVL+V GF N+AP F F+ R+NV LS+D DKT E +LH +V+ A   L P+ A LV+YTSYAD +T+PGHYVL+WE++   S A+P     V EECC+
Sbjct:  294 SWEGIIRRLWPRTKYIDVIVTGTMSQYIPTLEFY-GGGLPLTCTMYASSECYFGLNLNPMCKPSDVAYTLIPTMCYYEFLPVNCNNATA---------EASHRDLVDLVDVKLGHEYELVVTTYSGLYRYRVGDVLRVAGFKNKAPMFSFVRRQNVALSVDSDKTDETELHAAVSGAVQHLAPFGASLVEYTSYADAATIPGHYVLFWELR-AGSTAVP---ASVFEECCL 510          
BLAST of FC872027 vs. ExPASy Swiss-Prot
Match: GH33_ARATH (Indole-3-acetic acid-amido synthetase GH3.3 OS=Arabidopsis thaliana GN=GH3.3 PE=1 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 1.406e-66
Identity = 123/233 (52.79%), Postives = 163/233 (69.96%), Query Frame = 1
Query:    4 SWKGILCQLWPRAKYIEAVVTGSMAQYIPSLEYYIAGKLPLVGTMYASSECYFGVNLKPLSNPADFSFTLLPNMCYFEFLPLEGENGTLFSIEFNEEEEVPNDK--LVDLGHVRAGHYYELVVTTFAGLNRYRIGDVLQVTGFYNRAPQFLFICRRNVVLSIDYDKTHE*DLHKSVTIAKNLLEPYSALLVQYTSYADTSTVPGHYVLYWEIQIVDSPALPLDHQKVLEECCI 696
            SW+GI+ ++WP  KY++ +VTG+MAQYIP LEYY +G LP+  TMYASSE YFG+NLKP+  P++ S+T++PNM YFEFLP                 EVP +K  LV+L  V  G  YELV+TT+AGLNRYR+GD+LQVTGFYN APQF F+ R+NV+LSI+ DKT E +L  +V  A  LL      +++YTSYA+T T+PGHYV+YWE+ + D    P D  +V+  CC+
Sbjct:  294 SWEGIITKIWPNTKYLDVIVTGAMAQYIPMLEYY-SGGLPMACTMYASSESYFGINLKPMCKPSEVSYTIMPNMAYFEFLP---------------HHEVPTEKSELVELADVEVGKEYELVITTYAGLNRYRVGDILQVTGFYNSAPQFKFVRRKNVLLSIESDKTDEAELQSAVENASLLLGEQGTRVIEYTSYAETKTIPGHYVIYWELLVKDQTNPPND--EVMARCCL 508          
BLAST of FC872027 vs. ExPASy Swiss-Prot
Match: GH32_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.2 OS=Oryza sativa subsp. japonica GN=GH3.2 PE=2 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 1.190e-65
Identity = 118/234 (50.43%), Postives = 166/234 (70.94%), Query Frame = 1
Query:    7 WKGILCQLWPRAKYIEAVVTGSMAQYIPSLEYYIAGKLPLVGTMYASSECYFGVNLKPLSNPADFSFTLLPNMCYFEFLPLEGENGTLFSIEFNEEEEVPNDKLVDLGHVRAGHYYELVVTTFAGLNRYRIGDVLQVTGFYNRAPQFLFICRRNVVLSIDYDKTHE*DLHKSVTIAKNLLEPYSALLVQYTSYADTSTVPGHYVLYWEIQIVDSPALPLDHQK----VLEECCI 696
            W+GI+ ++WP  KY++ +VTG+MAQYIP+L++Y +G LP+  TMYASSECYFG+NL+P+ +P++ S+T++PNM YFE +P + +   L         + P  +LVDL     G  YELV+TT+AGL RYR+GD+LQVTGF+N APQF F+ R+NV+LSID DKT E +L  +V  A  LL PY A +V+YTS AD +T+PGHYV+YWE+ + +  A P   ++    V E CC+
Sbjct:  304 WEGIITRMWPNTKYLDVIVTGAMAQYIPTLKFY-SGGLPMACTMYASSECYFGLNLRPMCDPSEVSYTIMPNMGYFELMPHDPDAPPL-------PRDAPPPRLVDLADAEVGREYELVITTYAGLCRYRVGDILQVTGFHNAAPQFRFVRRKNVLLSIDSDKTDEAELQAAVERASALLSPYGASIVEYTSQADATTIPGHYVVYWELMVREGGAWPPPAEEEGRGVFERCCL 529          
BLAST of FC872027 vs. ExPASy Swiss-Prot
Match: GH34_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.4 OS=Oryza sativa subsp. japonica GN=GH3.4 PE=2 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 3.462e-65
Identity = 129/235 (54.89%), Postives = 169/235 (71.91%), Query Frame = 1
Query:    4 SWKGILCQLWPRAKYIEAVVTGSMAQYIPSLEYYIAGKLPLVGTMYASSECYFGVNLKPLSNPADFSFTLLPNMCYFEFLPLEGENGTLFSIEFNEEEEVPNDK-LVDLGHVRAGHYYELVVTTFAGLNRYRIGDVLQVTGFYNRAPQFLFICRRNVVLSIDYDKTHE*DLHKSVTIAKNLLEPYSALLVQYTSYADT-STVPGHYVLYWEIQIVDSPA--LPLDHQKVLEECCI 696
            SW+GI+ ++WP  KYI+ +VTG+MAQYIP+LE+Y  G LPL  TMYASSECYFG+NL P+  P++ ++TL+P MCYFEFLP+      + + E       P+ + LVDL  V+ GH YELVVTT++GL RYR+GDVL+V GF N AP F F+ R+NV LSID DKT E +LH +VT A   L P+ A LV+YTSYADT +T+PGHYVL+WE++   SPA   P+    V E+CC+
Sbjct:  299 SWQGIIRRVWPSTKYIDVIVTGAMAQYIPTLEFY-GGGLPLACTMYASSECYFGLNLNPMCKPSEVAYTLIPTMCYFEFLPVNSGANDVAAPE-------PDHRGLVDLVDVKLGHEYELVVTTYSGLYRYRVGDVLRVAGFKNAAPMFAFVRRKNVALSIDSDKTDEAELHAAVTEAVQHLAPFGASLVEYTSYADTATTIPGHYVLFWELR---SPAGGTPVP-ASVFEDCCL 521          
BLAST of FC872027 vs. ExPASy Swiss-Prot
Match: GH38_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.8 OS=Oryza sativa subsp. japonica GN=GH3.8 PE=2 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 3.828e-64
Identity = 120/232 (51.72%), Postives = 164/232 (70.69%), Query Frame = 1
Query:    1 GSWKGILCQLWPRAKYIEAVVTGSMAQYIPSLEYYIAGKLPLVGTMYASSECYFGVNLKPLSNPADFSFTLLPNMCYFEFLPLEGENGTLFSIEFNEEEEVPNDKLVDLGHVRAGHYYELVVTTFAGLNRYRIGDVLQVTGFYNRAPQFLFICRRNVVLSIDYDKTHE*DLHKSVTIAKNLLEPYSALLVQYTSYADTSTVPGHYVLYWEIQIVDSPALPLDHQKVLEECCI 696
            G W GI+ ++WP  KY++ +VTG+MAQYIP+LE+Y +G LP+  TMYASSECYFG+NL+P+ +P++ S+T++PNM YFEFLP++ E G                +LVDL  V  G  YELV+TT+AGLNRYR+GDVL+VTGF+N APQF F+ R+NV+LSI+ DKT E +L ++V  A  LL P+ A +V+YTS A T  +PGHYV+YWE+    + A  +D    L  CC+
Sbjct:  298 GDWAGIITRVWPNTKYLDVIVTGAMAQYIPTLEFY-SGGLPMACTMYASSECYFGLNLRPMCDPSEVSYTIMPNMGYFEFLPVD-ETGAASG---------DATQLVDLARVEVGREYELVITTYAGLNRYRVGDVLRVTGFHNAAPQFRFVRRKNVLLSIESDKTDEAELQRAVERASALLRPHGASVVEYTSQACTKRIPGHYVIYWELLTKGAGATVVD-ADTLGRCCL 517          
The following BLAST results are available for this feature:
BLAST of FC872027 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
GH39_ARATH4.203e-8769.70Putative indole-3-acetic acid-amido synthetase GH3... [more]
GH311_ORYSJ9.069e-8266.81Probable indole-3-acetic acid-amido synthetase GH3... [more]
GH317_ARATH6.960e-7457.81Indole-3-acetic acid-amido synthetase GH3.17 OS=Ar... [more]
GH35_ARATH5.515e-7156.90Indole-3-acetic acid-amido synthetase GH3.5 OS=Ara... [more]
GH36_ARATH1.229e-7056.90Indole-3-acetic acid-amido synthetase GH3.6 OS=Ara... [more]
GH31_ORYSJ8.805e-6955.41Probable indole-3-acetic acid-amido synthetase GH3... [more]
GH33_ARATH1.406e-6652.79Indole-3-acetic acid-amido synthetase GH3.3 OS=Ara... [more]
GH32_ORYSJ1.190e-6550.43Probable indole-3-acetic acid-amido synthetase GH3... [more]
GH34_ORYSJ3.462e-6554.89Probable indole-3-acetic acid-amido synthetase GH3... [more]
GH38_ORYSJ3.828e-6451.72Probable indole-3-acetic acid-amido synthetase GH3... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2BF02ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB2BF02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872027 ID=FC872027; Name=FC872027; organism=Citrus clementina; type=EST; length=698bp
GGGTCATGGAAAGGAATCTTGTGTCAACTTTGGCCTAGGGCTAAGTACAT
TGAGGCTGTAGTCACTGGCTCTATGGCACAATATATACCATCCCTGGAGT
ATTATATTGCAGGGAAGTTGCCCTTGGTGGGCACCATGTATGCTTCATCT
GAGTGTTACTTCGGTGTAAATTTGAAACCCTTGAGTAATCCTGCTGACTT
CTCGTTTACCCTCTTGCCTAACATGTGTTATTTTGAATTTTTGCCATTGG
AAGGTGAGAATGGCACGCTGTTTTCAATAGAATTTAATGAAGAAGAGGAG
GTGCCAAACGATAAGCTTGTTGATTTGGGGCATGTTAGAGCCGGCCATTA
CTATGAATTGGTTGTCACCACTTTTGCCGGGCTGAATCGATATCGAATTG
GCGATGTACTCCAAGTGACTGGATTCTACAATCGGGCGCCACAATTTCTA
TTCATATGCAGGAGAAATGTTGTTTTGAGCATAGACTATGACAAAACCCA
CGAATAAGATTTGCACAAAAGCGTGACTATTGCTAAAAACTTATTAGAAC
CTTACAGTGCGCTACTTGTACAATACACAAGCTATGCTGATACATCGACT
GTGCCCGGCCACTATGTATTATACTGGGAGATTCAAATAGTGGACTCGCC
AGCACTCCCACTTGATCATCAGAAGGTACTTGAAGAATGTTGCATTGC
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