FC872032

Overview
NameFC872032
Unique NameFC872032
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length465
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC872032_ssr323 microsatellite FC872032_ssr323:323..334. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9835 contig Ccv1_Contig9835:210..673. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872032 vs. ExPASy Swiss-Prot
Match: PR4A_TOBAC (Pathogenesis-related protein PR-4A OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 4.699e-37
Identity = 68/86 (79.07%), Postives = 74/86 (86.05%), Query Frame = 2
Query:    5 PLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNCND 262
            PLAWRQKYGWTAFC   GP GQ +CGRCLRVTN+GTG Q  VRIVDQC+NGGLDLD  VF +LDTNG+GYQQG LTV+YEFVNCND
Sbjct:   62 PLAWRQKYGWTAFCGPAGPRGQDSCGRCLRVTNTGTGTQTTVRIVDQCSNGGLDLDVNVFNQLDTNGVGYQQGHLTVNYEFVNCND 147          
BLAST of FC872032 vs. ExPASy Swiss-Prot
Match: PR4B_TOBAC (Pathogenesis-related protein PR-4B OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 3.046e-36
Identity = 67/86 (77.91%), Postives = 73/86 (84.88%), Query Frame = 2
Query:    5 PLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNCND 262
            PLAWRQKYGWTAFC   GP GQ +CGRCLRVTN+GTG Q  VRIVDQC+NGGLDLD  VF +LDTNG+GYQQG L V+YEFVNCND
Sbjct:   62 PLAWRQKYGWTAFCGPAGPRGQDSCGRCLRVTNTGTGTQATVRIVDQCSNGGLDLDVNVFNQLDTNGLGYQQGHLIVNYEFVNCND 147          
BLAST of FC872032 vs. ExPASy Swiss-Prot
Match: PRP2_SOLLC (Pathogenesis-related protein P2 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 4.863e-34
Identity = 62/84 (73.81%), Postives = 71/84 (84.52%), Query Frame = 2
Query:    5 PLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNC 256
            PL WR++YGWTAFC   GP GQA+CGRCLRVTN+GTG Q+ VRIVDQC NGGLDLD  VF +LDTNG+GYQ+G L V+YEFVNC
Sbjct:   60 PLEWRRRYGWTAFCGPAGPTGQASCGRCLRVTNTGTGTQETVRIVDQCRNGGLDLDVNVFNRLDTNGLGYQRGNLNVNYEFVNC 143          
BLAST of FC872032 vs. ExPASy Swiss-Prot
Match: BARW_HORVU (Barwin OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 7.022e-33
Identity = 64/87 (73.56%), Postives = 71/87 (81.61%), Query Frame = 2
Query:    5 PLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLD-EGVFKKLDTNGIGYQQGFLTVSYEFVNCND 262
            PL+WR KYGWTAFC   GP GQAACG+CLRVTN  TGAQ   RIVDQCANGGLDLD + VF K+DTNGIGYQQG L V+Y+FV+C D
Sbjct:   39 PLSWRSKYGWTAFCGPAGPRGQAACGKCLRVTNPATGAQITARIVDQCANGGLDLDWDTVFTKIDTNGIGYQQGHLNVNYQFVDCRD 125          
BLAST of FC872032 vs. ExPASy Swiss-Prot
Match: WHW2_WHEAT (Wheatwin-2 OS=Triticum aestivum GN=PR4B PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 5.945e-32
Identity = 63/87 (72.41%), Postives = 70/87 (80.46%), Query Frame = 2
Query:    5 PLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLD-EGVFKKLDTNGIGYQQGFLTVSYEFVNCND 262
            PL+WR KYGWTAFC   G  GQAACG+CLRVTN  TGAQ   RIVDQCANGGLDLD + VF K+DTNGIGYQQG L V+Y+FV+C D
Sbjct:   62 PLSWRSKYGWTAFCGPAGAHGQAACGKCLRVTNPATGAQITARIVDQCANGGLDLDWDTVFTKIDTNGIGYQQGHLNVNYQFVDCRD 148          
BLAST of FC872032 vs. ExPASy Swiss-Prot
Match: WIN_SOYBN (Wound-induced protein (Fragment) OS=Glycine max GN=WIN PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.950e-31
Identity = 58/86 (67.44%), Postives = 71/86 (82.56%), Query Frame = 2
Query:    5 PLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNCND 262
            P +WR KYGWTAFC   GP G+ +CG+CLRVTN+GTGA  IVRIVDQC+NGGLDLD GVF ++DT+G GYQQG L V+Y+FV+C +
Sbjct:    2 PYSWRSKYGWTAFCGPVGPRGRDSCGKCLRVTNTGTGANTIVRIVDQCSNGGLDLDVGVFNRIDTDGRGYQQGHLIVNYQFVDCGN 87          
BLAST of FC872032 vs. ExPASy Swiss-Prot
Match: WHW1_WHEAT (Wheatwin-1 OS=Triticum aestivum GN=PR4A PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 3.853e-31
Identity = 61/87 (70.11%), Postives = 70/87 (80.46%), Query Frame = 2
Query:    5 PLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLD-EGVFKKLDTNGIGYQQGFLTVSYEFVNCND 262
            PL+WR KYGWTAFC   G  GQA+CG+CL+VTN  TGAQ   RIVDQCANGGLDLD + VF K+DTNGIGYQQG L V+Y+FV+C D
Sbjct:   60 PLSWRSKYGWTAFCGPAGAHGQASCGKCLQVTNPATGAQITARIVDQCANGGLDLDWDTVFTKIDTNGIGYQQGHLNVNYQFVDCRD 146          
BLAST of FC872032 vs. ExPASy Swiss-Prot
Match: WIN2_SOLTU (Wound-induced protein WIN2 OS=Solanum tuberosum GN=WIN2 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.121e-30
Identity = 58/86 (67.44%), Postives = 70/86 (81.40%), Query Frame = 2
Query:    5 PLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNCND 262
            P AWR KYGWTAFC   GP G+ +CG+CLRVTN+ TGAQ  VRIVDQC+NGGLDLD  VF+++DT+G+G QQG L V+Y+FVNC D
Sbjct:  113 PYAWRSKYGWTAFCGPVGPRGRDSCGKCLRVTNTRTGAQTTVRIVDQCSNGGLDLDINVFQQIDTDGVGNQQGHLIVNYQFVNCGD 198          
BLAST of FC872032 vs. ExPASy Swiss-Prot
Match: HEVE_HEVBR (Pro-hevein OS=Hevea brasiliensis GN=HEV1 PE=1 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 7.267e-30
Identity = 55/86 (63.95%), Postives = 71/86 (82.56%), Query Frame = 2
Query:    5 PLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNCND 262
            P +WR KYGWTAFC   G  GQ++CG+CL VTN+GTGA+  VRIVDQC+NGGLDLD  VF++LDT+G GY++G +TV+Y+FV+C D
Sbjct:  104 PYSWRSKYGWTAFCGPVGAHGQSSCGKCLSVTNTGTGAKTTVRIVDQCSNGGLDLDVNVFRQLDTDGKGYERGHITVNYQFVDCGD 189          
BLAST of FC872032 vs. ExPASy Swiss-Prot
Match: PR4_PRUPE (Pathogenesis-related protein PR-4 (Fragment) OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 9.491e-30
Identity = 57/86 (66.28%), Postives = 68/86 (79.07%), Query Frame = 2
Query:    5 PLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNCND 262
            PL+WR KYGWTAFC   GP GQ +CG+CL VTN+GTGA+  VRIVDQC+NGGLDLD  VF ++DTNG G  QG L V+Y+FV+C D
Sbjct:   22 PLSWRSKYGWTAFCGPVGPTGQDSCGKCLLVTNTGTGAKVTVRIVDQCSNGGLDLDVNVFNQIDTNGQGNAQGHLIVNYDFVDCGD 107          
The following BLAST results are available for this feature:
BLAST of FC872032 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
PR4A_TOBAC4.699e-3779.07Pathogenesis-related protein PR-4A OS=Nicotiana ta... [more]
PR4B_TOBAC3.046e-3677.91Pathogenesis-related protein PR-4B OS=Nicotiana ta... [more]
PRP2_SOLLC4.863e-3473.81Pathogenesis-related protein P2 OS=Solanum lycoper... [more]
BARW_HORVU7.022e-3373.56Barwin OS=Hordeum vulgare PE=1 SV=1[more]
WHW2_WHEAT5.945e-3272.41Wheatwin-2 OS=Triticum aestivum GN=PR4B PE=1 SV=1[more]
WIN_SOYBN2.950e-3167.44Wound-induced protein (Fragment) OS=Glycine max GN... [more]
WHW1_WHEAT3.853e-3170.11Wheatwin-1 OS=Triticum aestivum GN=PR4A PE=1 SV=1[more]
WIN2_SOLTU1.121e-3067.44Wound-induced protein WIN2 OS=Solanum tuberosum GN... [more]
HEVE_HEVBR7.267e-3063.95Pro-hevein OS=Hevea brasiliensis GN=HEV1 PE=1 SV=2[more]
PR4_PRUPE9.491e-3066.28Pathogenesis-related protein PR-4 (Fragment) OS=Pr... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2BF09ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB2BF09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872032 ID=FC872032; Name=FC872032; organism=Citrus clementina; type=EST; length=465bp
GGGGCCCTTGGCCTGGCGCCAGAAATATGGCTGGACTGCTTTCTGTCATT
CGGGCGGACCCATTGGACAAGCTGCTTGTGGCAGGTGCTTAAGGGTCACA
AACAGTGGTACAGGAGCCCAACAAATTGTGAGAATTGTTGATCAGTGTGC
CAATGGAGGCTTAGATTTGGACGAAGGAGTGTTCAAGAAATTGGACACCA
ATGGAATAGGCTATCAACAAGGCTTCCTTACTGTCAGCTACGAGTTTGTG
AACTGCAATGATTAAAGCACCATCTATAATTCCATGATCGATCGAAGCTT
AATGCTGTAATAGGGTTAATTTATTAATTAATTATCCCTCTATATACTTA
GTTCATAAATAAAAATAAAACTTCTGATGAAGTATCAAGAAGTGCTCATG
GGCACTACAGTTATGTAATAAAAGTTTCCTTTTTTTACCAAAAAAAAAAA
AAAAAAAAAAAAAAA
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