FC872037

Overview
NameFC872037
Unique NameFC872037
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length621
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9836 contig Ccv1_Contig9836:1..621. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872037 vs. ExPASy Swiss-Prot
Match: GBA2_MOUSE (Non-lysosomal glucosylceramidase OS=Mus musculus GN=Gba2 PE=2 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 1.763e-19
Identity = 49/88 (55.68%), Postives = 57/88 (64.77%), Query Frame = 1
Query:    4 HPNGKVDETCMQSREIWTGVTYGVAATMILAGMEKEAFTTAEGIFTAGWSEEGYGYWFQTPEAWTMDGHFRSLIYMRPLSIWGMQWAL 267
            HP+G  D + +QS E+W GV YG+AATMI  G+  E F TAEG +   W  E  G  FQTPEA+     FRSL YMRPLSIW MQ AL
Sbjct:  796 HPHGVPDRSSVQSDEVWVGVVYGLAATMIQEGLTWEGFRTAEGCYRTVW--ERLGLAFQTPEAYCQQQVFRSLAYMRPLSIWAMQLAL 881          
BLAST of FC872037 vs. ExPASy Swiss-Prot
Match: GBA2_HUMAN (Non-lysosomal glucosylceramidase OS=Homo sapiens GN=GBA2 PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.143e-18
Identity = 48/87 (55.17%), Postives = 57/87 (65.52%), Query Frame = 1
Query:    7 PNGKVDETCMQSREIWTGVTYGVAATMILAGMEKEAFTTAEGIFTAGWSEEGYGYWFQTPEAWTMDGHFRSLIYMRPLSIWGMQWAL 267
            P+G  D++ +QS E+W GV YG+AATMI  G+  E F TAEG +   W  E  G  FQTPEA+     FRSL YMRPLSIW MQ AL
Sbjct:  806 PHGVPDKSSVQSDEVWVGVVYGLAATMIQEGLTWEGFQTAEGCYRTVW--ERLGLAFQTPEAYCQQRVFRSLAYMRPLSIWAMQLAL 890          
BLAST of FC872037 vs. ExPASy Swiss-Prot
Match: GBA2_RAT (Non-lysosomal glucosylceramidase OS=Rattus norvegicus GN=Gba2 PE=2 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.492e-18
Identity = 48/87 (55.17%), Postives = 56/87 (64.37%), Query Frame = 1
Query:    7 PNGKVDETCMQSREIWTGVTYGVAATMILAGMEKEAFTTAEGIFTAGWSEEGYGYWFQTPEAWTMDGHFRSLIYMRPLSIWGMQWAL 267
            P+G  D + +QS E+W GV YG+AATMI  G+  E F TAEG +   W  E  G  FQTPEA+     FRSL YMRPLSIW MQ AL
Sbjct:  797 PHGVPDRSSVQSDEVWVGVVYGLAATMIQEGLTWEGFRTAEGCYRTVW--ERLGLAFQTPEAYCQQRVFRSLAYMRPLSIWAMQLAL 881          
BLAST of FC872037 vs. ExPASy Swiss-Prot
Match: C3390_DROME (Non-lysosomal glucosylceramidase OS=Drosophila melanogaster GN=CG33090 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.230e-14
Identity = 42/85 (49.41%), Postives = 55/85 (64.71%), Query Frame = 1
Query:   13 GKVDETCMQSREIWTGVTYGVAATMILAGMEKEAFTTAEGIFTAGWSEEGYGYWFQTPEAWTMDGHFRSLIYMRPLSIWGMQWAL 267
            G VD + +Q+ E+W GV Y +AATMI  GM +EAF TA G++      +  G  F+TPEA   +  +RS+ YMRPLSIW MQ AL
Sbjct:  858 GHVDNSNIQAEEVWPGVVYALAATMIQEGMFEEAFQTAGGMYKT--LSQRIGMNFETPEALYGEKRYRSIGYMRPLSIWSMQVAL 940          
The following BLAST results are available for this feature:
BLAST of FC872037 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
GBA2_MOUSE1.763e-1955.68Non-lysosomal glucosylceramidase OS=Mus musculus G... [more]
GBA2_HUMAN1.143e-1855.17Non-lysosomal glucosylceramidase OS=Homo sapiens G... [more]
GBA2_RAT1.492e-1855.17Non-lysosomal glucosylceramidase OS=Rattus norvegi... [more]
C3390_DROME2.230e-1449.41Non-lysosomal glucosylceramidase OS=Drosophila mel... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAB2BG03ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB2BG03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872037 ID=FC872037; Name=FC872037; organism=Citrus clementina; type=EST; length=621bp
GGGCATCCAAATGGGAAAGTGGATGAGACTTGCATGCAGTCACGTGAAAT
ATGGACAGGTGTAACGTATGGTGTGGCAGCTACCATGATCCTTGCTGGAA
TGGAGAAAGAGGCATTCACTACTGCCGAAGGCATCTTCACTGCAGGCTGG
TCAGAAGAGGGCTATGGATACTGGTTTCAGACCCCTGAGGCATGGACAAT
GGACGGCCACTTCCGGTCCCTTATATATATGAGGCCTCTCTCAATTTGGG
GCATGCAGTGGGCGCTATCTATGCCTAAAACAGTTCTCCAGGCTCCTGAG
ATCAATATAATGGATAGAATAAGCATATCCCCTTCTGCTGCAGCAATATC
GCACGAATTTGGAGTTAGAAAGATAGCAAACAAAGCAAAGTGTTTTGGAG
CTGCTGTGTTTCATTGTTCATGCTAATTATCAAATGTAAGTGCCCCCCAC
CCCATCTTTGTAAAGATGTTAATTTGTTTGCTTCGTTGAACCCTCTTCCA
GCTAAAAAGATAAAATGCCGGAAGAGGCTTTGAGGAAGTGTTTCTTTCAT
AGACAAGCAATAAAAACCAAGTTAATTCTGTAGCTTAAACTCAAAAAAAA
AAAAAAAAAAAAAAAAAAAAA
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