FC872038
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC872038 vs. ExPASy Swiss-Prot
Match: BRXL1_ORYSJ (Protein Brevis radix-like 1 OS=Oryza sativa subsp. japonica GN=BRXL1 PE=2 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 6.717e-16 Identity = 40/83 (48.19%), Postives = 56/83 (67.47%), Query Frame = 1 Query: 262 SQTEASHCEATTKNKNRTMKAEPA--QGDEWVEQDETGVYITLVALPGGLKDLKRVRFSRKKFTEKQAEQWWAANRARVYQQY 504 S +S E +++ ++ A Q EWVE+DE GVYIT+ ALPGG+++L+RVRFSR+KF+E A WW NRAR++ QY Sbjct: 314 SMRSSSSPEEVDRSRELSVSVSNASDQEREWVEEDEPGVYITIRALPGGIRELRRVRFSREKFSEMHARLWWEENRARIHDQY 396 HSP 2 Score: 73.9442 bits (180), Expect = 1.186e-12 Identity = 59/190 (31.05%), Postives = 88/190 (46.32%), Query Frame = 1 Query: 1 RAGAKCR--AAKDVIKSLTAQLKDMAEMLPVGAVRNSN--SFHSSPTPAWDVSSATIEQPSSPLTFQGAIPXXXXXXXXXXXXXFGDNRSPSQT---------EASHCEATTKNKNRTMKAEPAQGDEWVEQDETGVYITLVALPGGLKDLKRVRFSRKKFTEKQAEQWWAANRARVYQQYNVSMVDKSS 531 R +C + + IK+LTAQ+KDMA + GA R+ + SS +PA + A P G+ G + +PS + E E + +E + EWV Q E GV IT ++LP G DLKR+RFSR+ F + QA++WWA N +V + YNV ++ + Sbjct: 32 RGAGECATPSTRQAIKALTAQIKDMA-LKASGAYRHCKPCAGSSSSSPA---AGARRHHPYHAYADSGS----DRFHYAYRRAGSGGDATPSVSARTDFLAGDEEEEEEEEEEEGTTADGSEDDEAKEWVAQVEPGVLITFLSLPEGGNDLKRIRFSREIFNKWQAQRWWAENYEKVMELYNVQRFNQQT 213
BLAST of FC872038 vs. ExPASy Swiss-Prot
Match: BRXL4_ARATH (Protein Brevis radix-like 4 OS=Arabidopsis thaliana GN=BRXL4 PE=2 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 4.354e-15 Identity = 41/92 (44.57%), Postives = 59/92 (64.13%), Query Frame = 1 Query: 256 SPSQTEASHCEATTKN-------KNRTMKAEPAQG--DEWVEQDETGVYITLVALPGGLKDLKRVRFSRKKFTEKQAEQWWAANRARVYQQY 504 S ++TE S +A+ ++ ++ M A +EWVEQDE GVYIT+ LPGG ++L+RVRFSR++F E A WW NRAR+++QY Sbjct: 292 SVAKTETSSIDASIRSSSSRDADRSEEMSVSNASDVDNEWVEQDEPGVYITIKVLPGGKRELRRVRFSRERFGEMHARLWWEENRARIHEQY 383 HSP 2 Score: 74.7146 bits (182), Expect = 6.951e-13 Identity = 38/88 (43.18%), Postives = 53/88 (60.23%), Query Frame = 1 Query: 286 EATTKNKNRTMKAEPA------QGDEWVEQDETGVYITLVALPGGLKDLKRVRFSRKKFTEKQAEQWWAANRARVYQQYNVSMVDKSS 531 EAT K+ + + +P + EWV Q E GV IT V+LPGG DLKR+RFSR F + QA++WWA N +V + YNV + + + Sbjct: 126 EATPKSASGRNRVDPIVFVEEKEPKEWVAQVEPGVLITFVSLPGGGNDLKRIRFSRDMFNKLQAQRWWADNYDKVMELYNVQKLSRQA 213
BLAST of FC872038 vs. ExPASy Swiss-Prot
Match: BRXL2_ARATH (Protein Brevis radix-like 2 OS=Arabidopsis thaliana GN=BRXL2 PE=2 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 7.427e-15 Identity = 36/54 (66.67%), Postives = 42/54 (77.78%), Query Frame = 1 Query: 343 EWVEQDETGVYITLVALPGGLKDLKRVRFSRKKFTEKQAEQWWAANRARVYQQY 504 EWVEQDE GVYIT+ ALP G ++L+RVRFSR+KF E A WW NRAR+ QQY Sbjct: 320 EWVEQDEAGVYITIRALPDGTRELRRVRFSREKFGETNARLWWEQNRARIQQQY 373 HSP 2 Score: 75.0998 bits (183), Expect = 5.322e-13 Identity = 56/177 (31.64%), Postives = 82/177 (46.33%), Query Frame = 1 Query: 37 IKSLTAQLKDMAEMLPVGAVRNSNSFHSSPTPAWDVSSATIEQPSSPLTFQGAI---------PXXXXXXXXXXXXXFGDNRSPSQTEASHCEATTKNKNRTMKAEPAQGDEWVEQDETGVYITLVALPGGLKDLKRVRFSRKKFTEKQAEQWWAANRARVYQQYNVSMVDKSSVSI 540 IKSLT+Q+KDMA + GA ++ S + S A + S+ F+ A P F ++ + E+T E + EWV Q E GV IT V+LP G D+KR+RFSR+ F + QA++WWA N +V + YNV ++ SV + Sbjct: 40 IKSLTSQIKDMA-VKASGAYKSCKPCSGSSNQNKNRSYADSDVASNSGRFRYAYKRAGSGSSTPKILGKEMESRLKGFLSGEGTPESMSGRTESTV------FMEEEDELKEWVAQVEPGVLITFVSLPEGGNDMKRIRFSREMFDKWQAQKWWAENFDKVMELYNVQQFNQQSVPL 209
BLAST of FC872038 vs. ExPASy Swiss-Prot
Match: BRXL3_ARATH (Protein Brevis radix-like 3 OS=Arabidopsis thaliana GN=BRXL3 PE=2 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.655e-14 Identity = 40/89 (44.94%), Postives = 55/89 (61.80%), Query Frame = 1 Query: 256 SPSQTEASHCEATTKNKNRTMKAEPAQGD------EWVEQDETGVYITLVALPGGLKDLKRVRFSRKKFTEKQAEQWWAANRARVYQQY 504 S ++TE S + + ++ + E + + EWVEQDE G+YIT+ ALP G ++L+RVRFSR KF E A WW NRAR+ QQY Sbjct: 281 SGTKTETSSTDGSARSSSVDRSEEVSVSNASDMESEWVEQDEPGIYITIRALPDGNRELRRVRFSRDKFGETHARLWWEQNRARIQQQY 369
BLAST of FC872038 vs. ExPASy Swiss-Prot
Match: BRXL1_ARATH (Protein Brevis radix-like 1 OS=Arabidopsis thaliana GN=BRXL1 PE=2 SV=2) HSP 1 Score: 78.9518 bits (193), Expect = 3.686e-14 Identity = 53/181 (29.28%), Postives = 87/181 (48.07%), Query Frame = 1 Query: 7 GAKCRAAKDVIKSLTAQLKDMAEMLPVGAVRN-----SNSFHSSPTPAWDVSSATIEQPSSPLTFQGAIPXXXXXXXXXXXXXFGDNRSPSQTEASHCEATTKNKNRTMKAEPAQGDEWVEQDETGVYITLVALPGGLKDLKRVRFSRKKFTEKQAEQWWAANRARVYQQYNVSMVDKSSV 534 G+ K+ +KSLT Q+KDMA ++ S+S + P +D +S ++ P P + P D+R S + ++ + + E + EW+ Q E GV+IT V+LP G DLKR+RFSR+ F + QA++WW N R+ + YNV ++ ++ Sbjct: 24 GSTTPNTKEAVKSLTTQIKDMASKFSGSHKQSKPTPGSSSSNLRKFPDFDTASESVPYPY-PGGSTSSTPAWDLPRSSYHQSGRPDSRFTSMYGGERESISAQSCDVVL--EDDEPKEWMAQVEPGVHITFVSLPSGGNDLKRIRFSREVFDKWQAQRWWGENYDRIVELYNVQRFNRQAL 201 HSP 2 Score: 74.3294 bits (181), Expect = 9.079e-13 Identity = 33/78 (42.31%), Postives = 50/78 (64.10%), Query Frame = 1 Query: 271 EASHCEATTKNKNRTMKAEPAQGDEWVEQDETGVYITLVALPGGLKDLKRVRFSRKKFTEKQAEQWWAANRARVYQQY 504 +A+ +++++ +M EWVE+DE GVYIT+ LP G ++L+RVRFSR++F E A+ WW NR R+ QY Sbjct: 253 DAARITTSSRDEPPSMSNASEMQGEWVEEDEPGVYITIRQLPDGTRELRRVRFSRERFGEVHAKTWWEQNRDRIQTQY 330
BLAST of FC872038 vs. ExPASy Swiss-Prot
Match: BRXL3_ORYSJ (Putative protein Brevis radix-like 3 OS=Oryza sativa subsp. japonica GN=BRXL3 PE=3 SV=2) HSP 1 Score: 73.559 bits (179), Expect = 1.549e-12 Identity = 63/194 (32.47%), Postives = 77/194 (39.69%), Query Frame = 1 Query: 7 GAKCRAAKDVIKSLTAQLKDMAEMLP--------VGAVRNSNSFHSS----PTPAWDVSSA---TIEQPSSPLTFQGAIPXXXXXXXXXXXXXFGDNRSPS----QTEASHCEATTK---------NKNRTMKAEPAQGDEWVEQDETGVYITLVALPGGLKDLKRVRFSRKKFTEKQAEQWWAANRARVYQQY 504 GA +D +KSLT+QLKDM A S SF S P P + SA T + A P + RS S Q +A T + E A EW Q E GV IT V LPGG DLKR+RFSR++F E +A+ WW NR R+ QY Sbjct: 19 GAATPHGRDAVKSLTSQLKDMVLKFSGSNKHQHYKAATAGSPSFRSRSYRRPYPGFIDDSAFMTTTRPGGEAYMYTRAAPPPPVRAASTSMATWDMTRSKSNRGWQQDAGRSPGGTTWIQSIEEEAGADDVTVVEDAVPREWTAQVEPGVQITFVTLPGGGNDLKRIRFSRERFGEDRAKVWWEHNRDRIQAQY 212
BLAST of FC872038 vs. ExPASy Swiss-Prot
Match: BRX_ARATH (Protein BREVIS RADIX OS=Arabidopsis thaliana GN=BRX PE=1 SV=2) HSP 1 Score: 70.0922 bits (170), Expect = 1.712e-11 Identity = 31/78 (39.74%), Postives = 48/78 (61.54%), Query Frame = 1 Query: 271 EASHCEATTKNKNRTMKAEPAQGDEWVEQDETGVYITLVALPGGLKDLKRVRFSRKKFTEKQAEQWWAANRARVYQQY 504 +A+ ++++ +M EW+E+DE GVYIT+ L G ++L+RVRFSR++F E A+ WW NR R+ QY Sbjct: 266 DAARTTTSSRDDPPSMSNASEMQAEWIEEDEPGVYITIRQLSDGTRELRRVRFSRERFGEVHAKTWWEQNRERIQTQY 343
BLAST of FC872038 vs. ExPASy Swiss-Prot
Match: BRXL2_ORYSJ (Protein Brevis radix-like 2 OS=Oryza sativa subsp. japonica GN=BRXL2 PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.712e-11 Identity = 35/79 (44.30%), Postives = 49/79 (62.03%), Query Frame = 1 Query: 268 TEASHCEATTKNKNRTMKAEPAQGDEWVEQDETGVYITLVALPGGLKDLKRVRFSRKKFTEKQAEQWWAANRARVYQQY 504 T +S EA+ N A + EWVEQDE GV IT+ G ++L+RVRFSR++F E++A+ WW NR R++ QY Sbjct: 336 TTSSRDEASVSISN----ASDLEATEWVEQDEPGVSITIREFGDGTRELRRVRFSRERFGEERAKVWWEQNRDRIHAQY 410
BLAST of FC872038 vs. ExPASy Swiss-Prot
Match: BRXL4_ORYSJ (Protein Brevis radix-like 4 OS=Oryza sativa subsp. japonica GN=BRXL4 PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 8.497e-11 Identity = 34/66 (51.52%), Postives = 45/66 (68.18%), Query Frame = 1 Query: 322 AEPAQGD--EWVEQDETGVYITLVALPGGL-KDLKRVRFSRKKFTEKQAEQWWAANRARVYQQYNV 510 A PA+G+ EWV Q E GV IT V+L GG DLKR+RFSR+ + + QA++WW N R+ + YNV Sbjct: 78 ARPAEGEAREWVAQVEPGVQITFVSLAGGGGNDLKRIRFSREMYDKWQAQKWWGENNERIMELYNV 143 The following BLAST results are available for this feature:
BLAST of FC872038 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 9
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC872038 ID=FC872038; Name=FC872038; organism=Citrus clementina; type=EST; length=824bpback to top |