FC872038

Overview
NameFC872038
Unique NameFC872038
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length824
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9837 contig Ccv1_Contig9837:1..824. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872038 vs. ExPASy Swiss-Prot
Match: BRXL1_ORYSJ (Protein Brevis radix-like 1 OS=Oryza sativa subsp. japonica GN=BRXL1 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.717e-16
Identity = 40/83 (48.19%), Postives = 56/83 (67.47%), Query Frame = 1
Query:  262 SQTEASHCEATTKNKNRTMKAEPA--QGDEWVEQDETGVYITLVALPGGLKDLKRVRFSRKKFTEKQAEQWWAANRARVYQQY 504
            S   +S  E   +++  ++    A  Q  EWVE+DE GVYIT+ ALPGG+++L+RVRFSR+KF+E  A  WW  NRAR++ QY
Sbjct:  314 SMRSSSSPEEVDRSRELSVSVSNASDQEREWVEEDEPGVYITIRALPGGIRELRRVRFSREKFSEMHARLWWEENRARIHDQY 396          

HSP 2 Score: 73.9442 bits (180), Expect = 1.186e-12
Identity = 59/190 (31.05%), Postives = 88/190 (46.32%), Query Frame = 1
Query:    1 RAGAKCR--AAKDVIKSLTAQLKDMAEMLPVGAVRNSN--SFHSSPTPAWDVSSATIEQPSSPLTFQGAIPXXXXXXXXXXXXXFGDNRSPSQT---------EASHCEATTKNKNRTMKAEPAQGDEWVEQDETGVYITLVALPGGLKDLKRVRFSRKKFTEKQAEQWWAANRARVYQQYNVSMVDKSS 531
            R   +C   + +  IK+LTAQ+KDMA +   GA R+    +  SS +PA   + A    P       G+                G + +PS +         E    E   +       +E  +  EWV Q E GV IT ++LP G  DLKR+RFSR+ F + QA++WWA N  +V + YNV   ++ +
Sbjct:   32 RGAGECATPSTRQAIKALTAQIKDMA-LKASGAYRHCKPCAGSSSSSPA---AGARRHHPYHAYADSGS----DRFHYAYRRAGSGGDATPSVSARTDFLAGDEEEEEEEEEEEGTTADGSEDDEAKEWVAQVEPGVLITFLSLPEGGNDLKRIRFSREIFNKWQAQRWWAENYEKVMELYNVQRFNQQT 213          
BLAST of FC872038 vs. ExPASy Swiss-Prot
Match: BRXL4_ARATH (Protein Brevis radix-like 4 OS=Arabidopsis thaliana GN=BRXL4 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.354e-15
Identity = 41/92 (44.57%), Postives = 59/92 (64.13%), Query Frame = 1
Query:  256 SPSQTEASHCEATTKN-------KNRTMKAEPAQG--DEWVEQDETGVYITLVALPGGLKDLKRVRFSRKKFTEKQAEQWWAANRARVYQQY 504
            S ++TE S  +A+ ++       ++  M    A    +EWVEQDE GVYIT+  LPGG ++L+RVRFSR++F E  A  WW  NRAR+++QY
Sbjct:  292 SVAKTETSSIDASIRSSSSRDADRSEEMSVSNASDVDNEWVEQDEPGVYITIKVLPGGKRELRRVRFSRERFGEMHARLWWEENRARIHEQY 383          

HSP 2 Score: 74.7146 bits (182), Expect = 6.951e-13
Identity = 38/88 (43.18%), Postives = 53/88 (60.23%), Query Frame = 1
Query:  286 EATTKNKNRTMKAEPA------QGDEWVEQDETGVYITLVALPGGLKDLKRVRFSRKKFTEKQAEQWWAANRARVYQQYNVSMVDKSS 531
            EAT K+ +   + +P       +  EWV Q E GV IT V+LPGG  DLKR+RFSR  F + QA++WWA N  +V + YNV  + + +
Sbjct:  126 EATPKSASGRNRVDPIVFVEEKEPKEWVAQVEPGVLITFVSLPGGGNDLKRIRFSRDMFNKLQAQRWWADNYDKVMELYNVQKLSRQA 213          
BLAST of FC872038 vs. ExPASy Swiss-Prot
Match: BRXL2_ARATH (Protein Brevis radix-like 2 OS=Arabidopsis thaliana GN=BRXL2 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.427e-15
Identity = 36/54 (66.67%), Postives = 42/54 (77.78%), Query Frame = 1
Query:  343 EWVEQDETGVYITLVALPGGLKDLKRVRFSRKKFTEKQAEQWWAANRARVYQQY 504
            EWVEQDE GVYIT+ ALP G ++L+RVRFSR+KF E  A  WW  NRAR+ QQY
Sbjct:  320 EWVEQDEAGVYITIRALPDGTRELRRVRFSREKFGETNARLWWEQNRARIQQQY 373          

HSP 2 Score: 75.0998 bits (183), Expect = 5.322e-13
Identity = 56/177 (31.64%), Postives = 82/177 (46.33%), Query Frame = 1
Query:   37 IKSLTAQLKDMAEMLPVGAVRNSNSFHSSPTPAWDVSSATIEQPSSPLTFQGAI---------PXXXXXXXXXXXXXFGDNRSPSQTEASHCEATTKNKNRTMKAEPAQGDEWVEQDETGVYITLVALPGGLKDLKRVRFSRKKFTEKQAEQWWAANRARVYQQYNVSMVDKSSVSI 540
            IKSLT+Q+KDMA +   GA ++      S     + S A  +  S+   F+ A          P             F       ++ +   E+T          E  +  EWV Q E GV IT V+LP G  D+KR+RFSR+ F + QA++WWA N  +V + YNV   ++ SV +
Sbjct:   40 IKSLTSQIKDMA-VKASGAYKSCKPCSGSSNQNKNRSYADSDVASNSGRFRYAYKRAGSGSSTPKILGKEMESRLKGFLSGEGTPESMSGRTESTV------FMEEEDELKEWVAQVEPGVLITFVSLPEGGNDMKRIRFSREMFDKWQAQKWWAENFDKVMELYNVQQFNQQSVPL 209          
BLAST of FC872038 vs. ExPASy Swiss-Prot
Match: BRXL3_ARATH (Protein Brevis radix-like 3 OS=Arabidopsis thaliana GN=BRXL3 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.655e-14
Identity = 40/89 (44.94%), Postives = 55/89 (61.80%), Query Frame = 1
Query:  256 SPSQTEASHCEATTKNKNRTMKAEPAQGD------EWVEQDETGVYITLVALPGGLKDLKRVRFSRKKFTEKQAEQWWAANRARVYQQY 504
            S ++TE S  + + ++ +     E +  +      EWVEQDE G+YIT+ ALP G ++L+RVRFSR KF E  A  WW  NRAR+ QQY
Sbjct:  281 SGTKTETSSTDGSARSSSVDRSEEVSVSNASDMESEWVEQDEPGIYITIRALPDGNRELRRVRFSRDKFGETHARLWWEQNRARIQQQY 369          
BLAST of FC872038 vs. ExPASy Swiss-Prot
Match: BRXL1_ARATH (Protein Brevis radix-like 1 OS=Arabidopsis thaliana GN=BRXL1 PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 3.686e-14
Identity = 53/181 (29.28%), Postives = 87/181 (48.07%), Query Frame = 1
Query:    7 GAKCRAAKDVIKSLTAQLKDMAEMLPVGAVRN-----SNSFHSSPTPAWDVSSATIEQPSSPLTFQGAIPXXXXXXXXXXXXXFGDNRSPSQTEASHCEATTKNKNRTMKAEPAQGDEWVEQDETGVYITLVALPGGLKDLKRVRFSRKKFTEKQAEQWWAANRARVYQQYNVSMVDKSSV 534
            G+     K+ +KSLT Q+KDMA        ++     S+S +    P +D +S ++  P  P     + P               D+R  S         + ++ +  +  E  +  EW+ Q E GV+IT V+LP G  DLKR+RFSR+ F + QA++WW  N  R+ + YNV   ++ ++
Sbjct:   24 GSTTPNTKEAVKSLTTQIKDMASKFSGSHKQSKPTPGSSSSNLRKFPDFDTASESVPYPY-PGGSTSSTPAWDLPRSSYHQSGRPDSRFTSMYGGERESISAQSCDVVL--EDDEPKEWMAQVEPGVHITFVSLPSGGNDLKRIRFSREVFDKWQAQRWWGENYDRIVELYNVQRFNRQAL 201          

HSP 2 Score: 74.3294 bits (181), Expect = 9.079e-13
Identity = 33/78 (42.31%), Postives = 50/78 (64.10%), Query Frame = 1
Query:  271 EASHCEATTKNKNRTMKAEPAQGDEWVEQDETGVYITLVALPGGLKDLKRVRFSRKKFTEKQAEQWWAANRARVYQQY 504
            +A+    +++++  +M        EWVE+DE GVYIT+  LP G ++L+RVRFSR++F E  A+ WW  NR R+  QY
Sbjct:  253 DAARITTSSRDEPPSMSNASEMQGEWVEEDEPGVYITIRQLPDGTRELRRVRFSRERFGEVHAKTWWEQNRDRIQTQY 330          
BLAST of FC872038 vs. ExPASy Swiss-Prot
Match: BRXL3_ORYSJ (Putative protein Brevis radix-like 3 OS=Oryza sativa subsp. japonica GN=BRXL3 PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.549e-12
Identity = 63/194 (32.47%), Postives = 77/194 (39.69%), Query Frame = 1
Query:    7 GAKCRAAKDVIKSLTAQLKDMAEMLP--------VGAVRNSNSFHSS----PTPAWDVSSA---TIEQPSSPLTFQGAIPXXXXXXXXXXXXXFGDNRSPS----QTEASHCEATTK---------NKNRTMKAEPAQGDEWVEQDETGVYITLVALPGGLKDLKRVRFSRKKFTEKQAEQWWAANRARVYQQY 504
            GA     +D +KSLT+QLKDM               A   S SF S     P P +   SA   T         +  A P             +   RS S    Q +A      T            +     E A   EW  Q E GV IT V LPGG  DLKR+RFSR++F E +A+ WW  NR R+  QY
Sbjct:   19 GAATPHGRDAVKSLTSQLKDMVLKFSGSNKHQHYKAATAGSPSFRSRSYRRPYPGFIDDSAFMTTTRPGGEAYMYTRAAPPPPVRAASTSMATWDMTRSKSNRGWQQDAGRSPGGTTWIQSIEEEAGADDVTVVEDAVPREWTAQVEPGVQITFVTLPGGGNDLKRIRFSRERFGEDRAKVWWEHNRDRIQAQY 212          
BLAST of FC872038 vs. ExPASy Swiss-Prot
Match: BRX_ARATH (Protein BREVIS RADIX OS=Arabidopsis thaliana GN=BRX PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.712e-11
Identity = 31/78 (39.74%), Postives = 48/78 (61.54%), Query Frame = 1
Query:  271 EASHCEATTKNKNRTMKAEPAQGDEWVEQDETGVYITLVALPGGLKDLKRVRFSRKKFTEKQAEQWWAANRARVYQQY 504
            +A+    ++++   +M        EW+E+DE GVYIT+  L  G ++L+RVRFSR++F E  A+ WW  NR R+  QY
Sbjct:  266 DAARTTTSSRDDPPSMSNASEMQAEWIEEDEPGVYITIRQLSDGTRELRRVRFSRERFGEVHAKTWWEQNRERIQTQY 343          
BLAST of FC872038 vs. ExPASy Swiss-Prot
Match: BRXL2_ORYSJ (Protein Brevis radix-like 2 OS=Oryza sativa subsp. japonica GN=BRXL2 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.712e-11
Identity = 35/79 (44.30%), Postives = 49/79 (62.03%), Query Frame = 1
Query:  268 TEASHCEATTKNKNRTMKAEPAQGDEWVEQDETGVYITLVALPGGLKDLKRVRFSRKKFTEKQAEQWWAANRARVYQQY 504
            T +S  EA+    N    A   +  EWVEQDE GV IT+     G ++L+RVRFSR++F E++A+ WW  NR R++ QY
Sbjct:  336 TTSSRDEASVSISN----ASDLEATEWVEQDEPGVSITIREFGDGTRELRRVRFSRERFGEERAKVWWEQNRDRIHAQY 410          
BLAST of FC872038 vs. ExPASy Swiss-Prot
Match: BRXL4_ORYSJ (Protein Brevis radix-like 4 OS=Oryza sativa subsp. japonica GN=BRXL4 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.497e-11
Identity = 34/66 (51.52%), Postives = 45/66 (68.18%), Query Frame = 1
Query:  322 AEPAQGD--EWVEQDETGVYITLVALPGGL-KDLKRVRFSRKKFTEKQAEQWWAANRARVYQQYNV 510
            A PA+G+  EWV Q E GV IT V+L GG   DLKR+RFSR+ + + QA++WW  N  R+ + YNV
Sbjct:   78 ARPAEGEAREWVAQVEPGVQITFVSLAGGGGNDLKRIRFSREMYDKWQAQKWWGENNERIMELYNV 143          
The following BLAST results are available for this feature:
BLAST of FC872038 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
BRXL1_ORYSJ6.717e-1648.19Protein Brevis radix-like 1 OS=Oryza sativa subsp.... [more]
BRXL4_ARATH4.354e-1544.57Protein Brevis radix-like 4 OS=Arabidopsis thalian... [more]
BRXL2_ARATH7.427e-1566.67Protein Brevis radix-like 2 OS=Arabidopsis thalian... [more]
BRXL3_ARATH1.655e-1444.94Protein Brevis radix-like 3 OS=Arabidopsis thalian... [more]
BRXL1_ARATH3.686e-1429.28Protein Brevis radix-like 1 OS=Arabidopsis thalian... [more]
BRXL3_ORYSJ1.549e-1232.47Putative protein Brevis radix-like 3 OS=Oryza sati... [more]
BRX_ARATH1.712e-1139.74Protein BREVIS RADIX OS=Arabidopsis thaliana GN=BR... [more]
BRXL2_ORYSJ1.712e-1144.30Protein Brevis radix-like 2 OS=Oryza sativa subsp.... [more]
BRXL4_ORYSJ8.497e-1151.52Protein Brevis radix-like 4 OS=Oryza sativa subsp.... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAB2BG04ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB2BG04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872038 ID=FC872038; Name=FC872038; organism=Citrus clementina; type=EST; length=824bp
CGCGCCGGGGCAAAATGTAGAGCAGCAAAAGATGTGATTAAGTCTCTTAC
TGCCCAATTGAAGGACATGGCTGAAATGTTACCTGTTGGAGCAGTGAGAA
ACAGCAATTCTTTTCATTCTAGCCCGACTCCTGCTTGGGATGTTTCTTCT
GCAACTATTGAGCAACCTAGCAGTCCTTTGACTTTCCAGGGAGCAATTCC
AAATGGATCAAACAGCTTGATACTTTCTAATGGGTCAAACTTTGGTGATA
ATCGCTCGCCAAGTCAAACTGAAGCGTCCCATTGTGAAGCAACAACAAAA
AACAAAAATAGAACAATGAAAGCTGAACCTGCCCAGGGTGATGAATGGGT
TGAACAAGATGAGACTGGTGTGTATATTACCCTTGTTGCTTTGCCTGGAG
GCCTCAAAGATCTTAAGCGAGTCCGCTTCAGTCGAAAGAAATTCACCGAG
AAACAAGCCGAACAGTGGTGGGCAGCAAACAGAGCTAGAGTATATCAGCA
ATACAACGTATCCATGGTTGACAAATCTAGCGTAAGCATCGGCAGAGAAG
GATTGGCTCATTGATCTGCCACATACAAGTTCTGCTGTTAGGAAAAAGTT
CAGAAGCTAGTGTTTTGGATTTTCTGCTTCTACGATTGAAGGAAAGCATC
GATCTAATACTCCCAATTTTGCTTTTTCAGTGGGAGTGTGGTAATTCTTC
CCTCAGTCCCGGTTTATCTTTTAAATTTCTTGTAAATGTGTCCATTTTTT
TCCTGAATTTTCTTTTGATGGAAGTACGTATGACTTCTGTAAATTCTTTG
TATGTAGGTTCCTCCTATATATAA
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