FC872074

Overview
NameFC872074
Unique NameFC872074
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length784
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC872074_ssr473 microsatellite FC872074_ssr473:473..482. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig21 contig Ccv1_Contig21:359..1142. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872074 vs. ExPASy Swiss-Prot
Match: DME_ARATH (Transcriptional activator DEMETER OS=Arabidopsis thaliana GN=DME PE=1 SV=2)

HSP 1 Score: 315.464 bits (807), Expect = 2.134e-85
Identity = 142/183 (77.60%), Postives = 164/183 (89.62%), Query Frame = 3
Query:    6 NQVYELPDSHPLLRGMEKREPDDPGRYLLAIWTPGETANSIQPPESRCSSQEHGKMCDEKTCFSCNSVRESEFQIVRGTILIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLKPINVPREWLWNLPRRTVYFGTSIPSIFKGLTTEGIQHCFWRGYVCVRGFDQKSRAPRPLMARLHFPASKL 554
            +QVYELPDSH LL GM+KREPDDP  YLLAIWTPGETANS QPPE +C  +  GKMC ++TC  CNS+RE+  Q VRGT+LIPCRTAMRGSFPLNGTYFQVNE+FADH+SSLKPI+VPR+W+W+LPRRTVYFGTS+ SIF+GL+TE IQ CFW+G+VCVRGF+QK+RAPRPLMARLHFPASKL
Sbjct: 1800 HQVYELPDSHRLLDGMDKREPDDPSPYLLAIWTPGETANSAQPPEQKCGGKASGKMCFDETCSECNSLREANSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNELFADHESSLKPIDVPRDWIWDLPRRTVYFGTSVTSIFRGLSTEQIQFCFWKGFVCVRGFEQKTRAPRPLMARLHFPASKL 1982          
BLAST of FC872074 vs. ExPASy Swiss-Prot
Match: ROS1_ARATH (Protein ROS1 OS=Arabidopsis thaliana GN=ROS1 PE=1 SV=2)

HSP 1 Score: 311.227 bits (796), Expect = 4.024e-84
Identity = 143/183 (78.14%), Postives = 162/183 (88.52%), Query Frame = 3
Query:    6 NQVYELPDSHPLLRGMEKREPDDPGRYLLAIWTPGETANSIQPPESRCSSQEHGKMCDEKTCFSCNSVRESEFQIVRGTILIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLKPINVPREWLWNLPRRTVYFGTSIPSIFKGLTTEGIQHCFWRGYVCVRGFDQKSRAPRPLMARLHFPASKL 554
            ++VYELPD HPLL  +EKREPDDP  YLLAIWTPGETA+SIQP  S C  Q +G +CDE+TCFSCNS++E+  QIVRGTILIPCRTAMRGSFPLNGTYFQVNEVFADH SSL PINVPRE +W LPRRTVYFGTS+P+IFKGL+TE IQ CFW+GYVCVRGFD+K+R P+PL+ARLHFPASKL
Sbjct: 1203 HRVYELPDEHPLLAQLEKREPDDPCSYLLAIWTPGETADSIQPSVSTCIFQANGMLCDEETCFSCNSIKETRSQIVRGTILIPCRTAMRGSFPLNGTYFQVNEVFADHASSLNPINVPRELIWELPRRTVYFGTSVPTIFKGLSTEKIQACFWKGYVCVRGFDRKTRGPKPLIARLHFPASKL 1385          
BLAST of FC872074 vs. ExPASy Swiss-Prot
Match: DML3_ARATH (DEMETER-like protein 3 OS=Arabidopsis thaliana GN=DML3 PE=2 SV=2)

HSP 1 Score: 209.92 bits (533), Expect = 1.263e-53
Identity = 100/177 (56.50%), Postives = 126/177 (71.19%), Query Frame = 3
Query:   12 VYELPDSHPLLRGMEKREPDDPGRYLLAIWTPGETANSIQPPESRCSSQEHGKMCDEKTCFSCNSVRESEFQIVRGTILIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLKPINVPREWLWNLPRRTVYFGTSIPSIFKGLTTEGIQHCFWRGYVCVRGFDQKSRAPRPLMARLHFP 542
            VY LPD+H LL   E+R+ DDP  YLLAIW PGET++S  PP+ +CSS +  K+C  K C  C ++RE    I RGTILIPCRTAMRG+FPLNGTYFQ NEVFADH++SL PI   RE    L +R +Y G+++ SIFK L T  I+ CFW G++C+R FD+K R P+ L+ RLH P
Sbjct:  855 VYVLPDNHELLHDFERRKLDDPSPYLLAIWQPGETSSSFVPPKKKCSS-DGSKLCKIKNCSYCWTIREQNSNIFRGTILIPCRTAMRGAFPLNGTYFQTNEVFADHETSLNPIVFRRELCKGLEKRALYCGSTVTSIFKLLDTRRIELCFWTGFLCLRAFDRKQRDPKELVRRLHTP 1030          
BLAST of FC872074 vs. ExPASy Swiss-Prot
Match: DML2_ARATH (DEMETER-like protein 2 OS=Arabidopsis thaliana GN=DML2 PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.396e-52
Identity = 97/156 (62.18%), Postives = 116/156 (74.36%), Query Frame = 3
Query:    6 NQVYELPDSHPLLRGMEKREPDDPGRYLLAIWTPGETANSIQPPESRCSSQE-HGKMCDEKTCFSCNSVRESEFQIVRGTILIPCRTAMRGSFPLNGTYFQVNEVFADHDSSLKPINVPREWLWNLPRRTVYFGTSIPSIFKGLTTEGIQHCFWRG 470
            + V+ELPD H +L G E+RE +D   YLLAIWTPGET NSIQPP+ RC+  E +  +C+E  CF CN  RE E Q VRGTILIPCRTAMRG FPLNGTYFQ NEVFADHDSS+ PI+VP E +W+L RR  Y G+S+ SI KGL+ E I++ F  G
Sbjct: 1118 HHVFELPDHHSILEGFERREAEDIVPYLLAIWTPGETVNSIQPPKQRCALFESNNTLCNENKCFQCNKTREEESQTVRGTILIPCRTAMRGGFPLNGTYFQTNEVFADHDSSINPIDVPTELIWDLKRRVAYLGSSVSSICKGLSVEAIKYNFQEG 1273          
The following BLAST results are available for this feature:
BLAST of FC872074 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
DME_ARATH2.134e-8577.60Transcriptional activator DEMETER OS=Arabidopsis t... [more]
ROS1_ARATH4.024e-8478.14Protein ROS1 OS=Arabidopsis thaliana GN=ROS1 PE=1 ... [more]
DML3_ARATH1.263e-5356.50DEMETER-like protein 3 OS=Arabidopsis thaliana GN=... [more]
DML2_ARATH1.396e-5262.18DEMETER-like protein 2 OS=Arabidopsis thaliana GN=... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAB2CC04ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB2CC04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872074 ID=FC872074; Name=FC872074; organism=Citrus clementina; type=EST; length=784bp
GGGGAAACCAAGTGTATGAACTTCCAGATTCACACCCTCTTTTGCGTGGG
ATGGAAAAAAGAGAACCTGATGACCCAGGCAGATATCTTCTTGCCATATG
GACACCAGGTGAAACGGCAAATTCTATACAACCACCTGAAAGTAGGTGCA
GTTCTCAAGAGCATGGCAAAATGTGCGATGAGAAGACATGTTTTTCATGC
AACAGTGTTCGGGAATCAGAGTTTCAAATTGTTCGAGGGACCATTTTGAT
ACCGTGTCGAACAGCAATGAGAGGAAGCTTTCCCCTAAATGGCACATATT
TCCAAGTTAATGAGGTATTTGCAGACCATGATTCTAGCTTGAAGCCCATT
AATGTTCCCAGGGAGTGGTTATGGAACCTACCTAGGCGGACTGTGTATTT
TGGAACCTCTATACCTTCAATATTTAAAGGTTTAACAACAGAAGGAATTC
AGCACTGCTTCTGGAGAGGATATGTGTGTGTGAGGGGATTTGACCAAAAA
TCACGAGCACCCCGTCCTCTGATGGCGAGACTGCATTTCCCAGCAAGCAA
GTTGAACAAGGTACCAGGTAAAGCAGATGCAGATCATAAGTAGACGTCAA
TGCCAATGTTTCTATGTATGGAGAGAATGACCAACAGCTAGTGGCTCACC
GTTAAAAACTTGCCAAATTTTCTCACCCTATGGGTGCTTGTAGCATGTTC
ATGATTTAAAAAGTCTATAGTTACCTAATGGCGTGCTCAAATTTGAGCAA
TTCTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAA
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