FC872089

Overview
NameFC872089
Unique NameFC872089
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length578
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9329 contig Ccv1_Contig9329:1..579. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC872089 vs. ExPASy Swiss-Prot
Match: ITH5_CUCMA (Inhibitor of trypsin and hageman factor OS=Cucurbita maxima PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.111e-13
Identity = 35/66 (53.03%), Postives = 42/66 (63.64%), Query Frame = 3 
Query:  204 CNGKSSWPELVGVNGEIAAATIQKENPNVHAIIILEGTPVTQDFRCXXXXXXXXXXXXXXXXPRIG 401
            C GKSSWP LVGV G +A A I+++NPNV A+I+ EGTPVT+DFRC                PRIG
Sbjct:    3 CPGKSSWPHLVGVGGSVAKAIIERQNPNVKAVILEEGTPVTKDFRCNRVRIWVNKRGLVVSPPRIG 68
[Close]
BLAST of FC872089 vs. ExPASy Swiss-Prot
Match: ICI_LINUS (Proteinase inhibitor OS=Linum usitatissimum PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.158e-11
Identity = 28/46 (60.87%), Postives = 40/46 (86.96%), Query Frame = 3 
Query:  204 CNGKSSWPELVGVNGEIAAATIQKENPNVHAIIILEGTPVTQDFRC 341
            C GK++WPELVG +G +AAAT+++EN NVHAI++ EG+ +T+DFRC
Sbjct:    4 CPGKNAWPELVGKSGNMAAATVERENRNVHAIVLKEGSAMTKDFRC 49
The following BLAST results are available for this feature:
BLAST of FC872089 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
ITH5_CUCMA2.111e-1353.03Inhibitor of trypsin and hageman factor OS=Cucurbi... [more]
ICI_LINUS1.158e-1160.87Proteinase inhibitor OS=Linum usitatissimum PE=1 S... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAB2CD09ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB2CD09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872089 ID=FC872089; Name=FC872089; organism=Citrus clementina; type=EST; length=578bp
GCGGGGGTCTAACAGCCTTCAAAATAATTGAAAATTAATCAACAATGAAG
AACACAGTACTAGCACTAGCTTTCTTCGTCTTTCTCTTTGCCTTTGCTGC
AAAACCATCTTTGGCTGCTCGTCATGAGCCGTTAGTGCTTCATTCGGATG
GCCAGGAGCTCCTCATGGCTACCAGCAATTGCGATATCGTAACTCAATTT
GAGTGTAATGGCAAGAGCTCATGGCCAGAACTGGTTGGTGTAAACGGGGA
GATTGCTGCTGCTACGATACAGAAAGAGAATCCTAATGTTCATGCAATCA
TAATACTTGAGGGAACTCCAGTTACACAAGATTTTCGTTGTGATCGGGTT
CGAGTTGTGGTTGACAAATATGAGAAGGTGGTTCAAGTTCCTCGGATTGG
CTGAACTTCGACGATTATCTGCAATCATCATGGCTGGATGATGGTCAGGA
TTAACTGCTTGTTTATAATCACTTAACTATGTATTAGTAAAATAAATGAA
CAAGTAGTGTTGTTTAATAAAGCATGCATGGATGTGCGTGATATCCAAAT
AAAAAAAAAAAAAAAAAAAAAAAAAAAA
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