FC872091

Overview
NameFC872091
Unique NameFC872091
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length759
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC872091_ssr7 microsatellite FC872091_ssr7:7..18. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9856 contig Ccv1_Contig9856:1..759. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872091 vs. ExPASy Swiss-Prot
Match: AP1S2_DICDI (AP-1 complex subunit sigma-2 OS=Dictyostelium discoideum GN=ap1s2 PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.922e-59
Identity = 102/141 (72.34%), Postives = 127/141 (90.07%), Query Frame = 3
Query:  123 HFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYKRYASLYFCMCIDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQDSLVE 545
            HF+LL+SRQGK RLTKWYSP+T KE+S+  RE+  ++L R PKLCNF+EW+ YK+++KRYASLYF +C D+EDNEL +LEIIHH+VEILDRYFG+VCELDLIFNFHKAYYILDE+++AGELQE+SKKTV RLI+ QD+L+E
Sbjct:    4 HFLLLLSRQGKTRLTKWYSPFTNKEKSRFTREIGNMVLNRPPKLCNFLEWKEYKIIFKRYASLYFVVCCDREDNELIVLEIIHHFVEILDRYFGNVCELDLIFNFHKAYYILDELIMAGELQETSKKTVLRLISQQDTLLE 144          
BLAST of FC872091 vs. ExPASy Swiss-Prot
Match: AP1S2_MOUSE (AP-1 complex subunit sigma-2 OS=Mus musculus GN=Ap1s2 PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 6.197e-50
Identity = 92/146 (63.01%), Postives = 113/146 (77.40%), Query Frame = 3
Query:  120 IHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYKRYASLYFCMCIDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQDSLVETAKE 557
            + F+LL SRQGK+RL KWY P + KE+ K+ REL   +L R PK+C+F+EWR  K+VYKRYASLYFC  I+ +DNEL  LEIIH YVE+LD+YFGSVCELD+IFNF KAY+ILDE L+ GE+QE+SKK V + I   D L E AKE
Sbjct:    1 MQFMLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEWRDLKIVYKRYASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGGEVQETSKKNVLKAIEQADLLQEDAKE 146          
BLAST of FC872091 vs. ExPASy Swiss-Prot
Match: AP1S2_BOVIN (AP-1 complex subunit sigma-2 OS=Bos taurus GN=AP1S2 PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 6.197e-50
Identity = 92/146 (63.01%), Postives = 113/146 (77.40%), Query Frame = 3
Query:  120 IHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYKRYASLYFCMCIDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQDSLVETAKE 557
            + F+LL SRQGK+RL KWY P + KE+ K+ REL   +L R PK+C+F+EWR  K+VYKRYASLYFC  I+ +DNEL  LEIIH YVE+LD+YFGSVCELD+IFNF KAY+ILDE L+ GE+QE+SKK V + I   D L E AKE
Sbjct:    1 MQFMLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEWRDLKIVYKRYASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGGEVQETSKKNVLKAIEQADLLQEDAKE 146          
BLAST of FC872091 vs. ExPASy Swiss-Prot
Match: AP1S2_HUMAN (AP-1 complex subunit sigma-2 OS=Homo sapiens GN=AP1S2 PE=1 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.803e-49
Identity = 92/154 (59.74%), Postives = 115/154 (74.68%), Query Frame = 3
Query:  120 IHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYKRYASLYFCMCIDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNI 581
            + F+LL SRQGK+RL KWY P + KE+ K+ REL   +L R PK+C+F+EWR  K+VYKRYASLYFC  I+ +DNEL  LEIIH YVE+LD+YFGSVCELD+IFNF KAY+ILDE L+ GE+QE+SKK V + I   D L E A+   S +  I
Sbjct:    1 MQFMLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEWRDLKIVYKRYASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGGEVQETSKKNVLKAIEQADLLQEEAETPRSVLEEI 154          
BLAST of FC872091 vs. ExPASy Swiss-Prot
Match: AP1S1_SCHPO (AP-1 complex subunit sigma-1 OS=Schizosaccharomyces pombe GN=SPAP27G11.06c PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.994e-48
Identity = 91/160 (56.88%), Postives = 124/160 (77.50%), Query Frame = 3
Query:  120 IHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYKRYASLYFCMCIDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 599
            I F LL+SRQGKVRL KW++  + KER+K+IR++S +++TR PK+CNFVE++G K+VY+RYASL+F   I+Q+DNEL ILE+IH +VE LD+YFG+VCELDLIFNF KAYY+++E+L+AGELQESSK  V   + A D+  E A  Q  S+  ++    K
Sbjct:    3 IKFFLLVSRQGKVRLAKWFNTLSIKERAKIIRDVSSLVITRKPKMCNFVEYKGEKIVYRRYASLFFVCGIEQDDNELIILEVIHKFVECLDKYFGNVCELDLIFNFEKAYYVMEELLLAGELQESSKTNVLSAVLAGDAESE-ADAQQDSLQKLVGSVKK 161          
BLAST of FC872091 vs. ExPASy Swiss-Prot
Match: AP1S1_MOUSE (AP-1 complex subunit sigma-1A OS=Mus musculus GN=Ap1s1 PE=1 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.401e-48
Identity = 90/155 (58.06%), Postives = 117/155 (75.48%), Query Frame = 3
Query:  117 MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYKRYASLYFCMCIDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNI 581
            M+ F+LL SRQGK+RL KWY   + KER K++REL  V+L R PK+C+F+EWR  KVVYKRYASLYFC  I+ +DNEL  LE+IH YVE+LD+YFGSVCELD+IFNF KAY+ILDE L+ G++Q++SKK+V + I   D L E  +   S +  +
Sbjct:    1 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYKRYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMGGDVQDTSKKSVLKAIEQADLLQEEDESPRSVLEEM 155          
BLAST of FC872091 vs. ExPASy Swiss-Prot
Match: AP1S1_HUMAN (AP-1 complex subunit sigma-1A OS=Homo sapiens GN=AP1S1 PE=1 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.401e-48
Identity = 90/155 (58.06%), Postives = 117/155 (75.48%), Query Frame = 3
Query:  117 MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYKRYASLYFCMCIDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNI 581
            M+ F+LL SRQGK+RL KWY   + KER K++REL  V+L R PK+C+F+EWR  KVVYKRYASLYFC  I+ +DNEL  LE+IH YVE+LD+YFGSVCELD+IFNF KAY+ILDE L+ G++Q++SKK+V + I   D L E  +   S +  +
Sbjct:    1 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYKRYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMGGDVQDTSKKSVLKAIEQADLLQEEDESPRSVLEEM 155          
BLAST of FC872091 vs. ExPASy Swiss-Prot
Match: AP1S3_MOUSE (AP-1 complex subunit sigma-3 OS=Mus musculus GN=Ap1s3 PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 5.801e-48
Identity = 86/147 (58.50%), Postives = 113/147 (76.87%), Query Frame = 3
Query:  117 MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYKRYASLYFCMCIDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQDSLVETAKE 557
            MIHF+LL SRQGK+RL KWY+    KER K+ R++   +L+RG +  +F++W+  K+VYKRYASLYFC  I+ +DNEL  LEI+H YVE+LD+YFG+VCELD+IFNF KAY+ILDE +I GE+QE+SKKT  + I   D L ET +E
Sbjct:    1 MIHFILLFSRQGKLRLQKWYTTLPDKERKKITRDIIQTVLSRGHRTSSFIDWKELKLVYKRYASLYFCCAIENQDNELLTLEIVHRYVELLDKYFGNVCELDIIFNFEKAYFILDEFIIGGEIQETSKKTAVKAIEDSDMLQETMEE 147          
BLAST of FC872091 vs. ExPASy Swiss-Prot
Match: AP1S1_BOVIN (AP-1 complex subunit sigma-1A OS=Bos taurus GN=AP1S1 PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.292e-47
Identity = 89/154 (57.79%), Postives = 116/154 (75.32%), Query Frame = 3
Query:  120 IHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYKRYASLYFCMCIDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNI 581
            + F+LL SRQGK+RL KWY   + KER K++REL  V+L R PK+C+F+EWR  KVVYKRYASLYFC  I+ +DNEL  LE+IH YVE+LD+YFGSVCELD+IFNF KAY+ILDE L+ G++Q++SKK+V + I   D L E  +   S +  +
Sbjct:    1 MRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDLKVVYKRYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMGGDVQDTSKKSVLKAIEQADLLQEEDESPRSVLEEM 154          
BLAST of FC872091 vs. ExPASy Swiss-Prot
Match: AP1S3_HUMAN (AP-1 complex subunit sigma-3 OS=Homo sapiens GN=AP1S3 PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 8.376e-47
Identity = 86/145 (59.31%), Postives = 110/145 (75.86%), Query Frame = 3
Query:  117 MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGVILTRGPKLCNFVEWRGYKVVYKRYASLYFCMCIDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQDSLVETA 551
            MIHF+LL SRQGK+RL KWY     KER K+ RE+  +IL+RG +  +FV+W+  K+VYKRYASLYFC  I+ +DNEL  LEI+H YVE+LD+YFG+VCELD+IFNF KAY+ILDE +I GE+QE+SKK   + I   D L E +
Sbjct:    1 MIHFILLFSRQGKLRLQKWYITLPDKERKKITREIVQIILSRGHRTSSFVDWKELKLVYKRYASLYFCCAIENQDNELLTLEIVHRYVELLDKYFGNVCELDIIFNFEKAYFILDEFIIGGEIQETSKKIAVKAIEDSDMLQEVS 145          
The following BLAST results are available for this feature:
BLAST of FC872091 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
AP1S2_DICDI1.922e-5972.34AP-1 complex subunit sigma-2 OS=Dictyostelium disc... [more]
AP1S2_MOUSE6.197e-5063.01AP-1 complex subunit sigma-2 OS=Mus musculus GN=Ap... [more]
AP1S2_BOVIN6.197e-5063.01AP-1 complex subunit sigma-2 OS=Bos taurus GN=AP1S... [more]
AP1S2_HUMAN1.803e-4959.74AP-1 complex subunit sigma-2 OS=Homo sapiens GN=AP... [more]
AP1S1_SCHPO1.994e-4856.88AP-1 complex subunit sigma-1 OS=Schizosaccharomyce... [more]
AP1S1_MOUSE3.401e-4858.06AP-1 complex subunit sigma-1A OS=Mus musculus GN=A... [more]
AP1S1_HUMAN3.401e-4858.06AP-1 complex subunit sigma-1A OS=Homo sapiens GN=A... [more]
AP1S3_MOUSE5.801e-4858.50AP-1 complex subunit sigma-3 OS=Mus musculus GN=Ap... [more]
AP1S1_BOVIN1.292e-4757.79AP-1 complex subunit sigma-1A OS=Bos taurus GN=AP1... [more]
AP1S3_HUMAN8.376e-4759.31AP-1 complex subunit sigma-3 OS=Homo sapiens GN=AP... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2CD11ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB2CD11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872091 ID=FC872091; Name=FC872091; organism=Citrus clementina; type=EST; length=759bp
GGGGAGAATAATAATAATCTTTAAGAGGAGAAGACAATACAGACAGCGGA
AGTGGAGCAGATAAGAATTGCATAACATATTAAAGCTGACGGGTATTTCA
TCATCAAACACAAACAATGATTCACTTTGTGCTTCTTATTAGTCGACAAG
GAAAAGTAAGGTTGACAAAATGGTATTCTCCTTATACACAGAAGGAAAGA
AGTAAGGTTATCCGTGAGCTAAGTGGTGTGATTCTTACACGAGGACCTAA
GCTCTGTAATTTTGTGGAATGGAGAGGGTACAAGGTTGTCTATAAAAGAT
ATGCTAGTCTATACTTCTGCATGTGCATTGATCAGGAAGACAATGAGTTA
GAGATCCTTGAAATAATTCATCATTATGTTGAGATTCTTGACAGATACTT
TGGCAGTGTTTGTGAGTTGGACCTCATCTTCAACTTTCACAAGGCTTATT
ACATATTGGATGAGATCTTGATTGCTGGCGAACTTCAAGAGTCCAGCAAG
AAAACAGTCGCACGGCTAATAGCTGCACAGGATTCACTGGTGGAGACTGC
AAAAGAGCAAGCTAGTTCAATAAGTAATATAATCGCACAGGCCACAAAGT
AGGATGTACCAAGTATGTTCGTGTAATATATTGATTGAGTTTGAAGTGAT
TTCTGCATTGAATTTCCTCTTCCAGTTCCTTTTCAAGAATTTAATAACAT
GTTAAGAATGTATTTTTAAGAAAAAAAATAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAA
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