FC872092

Overview
NameFC872092
Unique NameFC872092
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length803
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9857 contig Ccv1_Contig9857:1..803. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC872092 vs. ExPASy Swiss-Prot
Match: RR20_ARATH (30S ribosomal protein S20, chloroplastic OS=Arabidopsis thaliana GN=RPS20 PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.513e-28
Identity = 72/143 (50.35%), Postives = 86/143 (60.14%), Query Frame = 1 
Query:  193 FSNKLSHNV-FSTGSLTMSPIQRPMRHSVVCEXXXXXXXXXXXXXXXXXXXXX-IYNKSRKSEVKTRMKKVLEALDGLRKKPDAQPEEVLPVEKLIAEAYSVIDKAVKVGTLHRNTGXXXXXXXXXXXXXVEIHHGWYTPTPA 615
            FS  +S  V FSTG+L    +Q+PMR  +VCE                      +YNKS+KSE +TRMKKVLEAL+GL+KK DAQ +E++ VEKLI EAYS IDKAVKV  LH+NTG             VEIHHGWY P  A
Sbjct:   51 FSQSVSQCVAFSTGNLW---VQKPMRQLIVCEAAAPTKKADSAAKRARQAEKRRVYNKSKKSEARTRMKKVLEALEGLKKKTDAQADEIVTVEKLIGEAYSAIDKAVKVKALHKNTGARRKSRLARRKKAVEIHHGWYVPDAA 190
The following BLAST results are available for this feature:
BLAST of FC872092 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RR20_ARATH2.513e-2850.3530S ribosomal protein S20, chloroplastic OS=Arabid... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAB2CE01ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB2CE01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872092 ID=FC872092; Name=FC872092; organism=Citrus clementina; type=EST; length=803bp
GGGGGCTCTATATCTTCATCACCCGTCCGACCCCCACTGTGGCCGAGTGG
ATAAACAAAAACAAAGAGAGAGATGGCACTTCACTGCTTATCATCATCGT
CTTGTTTAACGATTCAATCAAAATTCAAGACCCTCTCACTAAACAACAAC
TCTTCTTCTCACTCCAGCTTCGCCACTTTCAAATCTCTCTGTTTCTCCAA
TAAGCTCTCCCACAATGTCTTCTCCACAGGCTCCCTCACAATGAGCCCAA
TCCAGAGGCCAATGCGTCATTCAGTTGTTTGCGAGGCAGCTACTAAGAAG
AAAGCTGATTCAGCTGCAAAGAGAGCTCGTCAAGCTGAGAAAAGGCGCAT
CTATAACAAATCTAGGAAATCTGAAGTCAAAACCCGCATGAAGAAGGTTT
TGGAAGCACTGGATGGGCTCAGGAAGAAACCTGATGCACAACCTGAGGAA
GTTCTTCCAGTTGAGAAGCTGATTGCAGAGGCGTATTCAGTTATCGACAA
AGCAGTGAAAGTGGGAACGTTGCACAGGAACACTGGTGCTCGCAGAAAGT
CCCGGCTTGCTCGGAGAAAGAAGGCTGTGGAGATTCACCATGGCTGGTAT
ACCCCTACTCCTGCAGAAACGGTCCAATGAAAAGGGAGGAGCATGTGGGA
AAATAAGTTGTTCAGTTTCTTAATGTAGAGGTTGTGAACTGTCACATTTT
GTTATTATATACTGTGTCTCCTTCATTTTTCTGCCTCTTTTGTTAAAACT
TGTACATTTGAATGTGCCTTTTGACCTATCAAAGTTGGCATTGGCTAGTT
AGG
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