FC872099

Overview
NameFC872099
Unique NameFC872099
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15214 contig Ccv1_Contig15214:151..856. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872099 vs. ExPASy Swiss-Prot
Match: NACA1_ARATH (Nascent polypeptide-associated complex subunit alpha-like protein 1 OS=Arabidopsis thaliana GN=At3g12390 PE=1 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.399e-53
Identity = 114/136 (83.82%), Postives = 121/136 (88.97%), Query Frame = 1
Query:  139 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQLQTQAAEQFKVPPPNTGNVASKPESS--AMVQDDEKVDETGVEPKDIELVMTQAGVPRSRAVKALKAADGDIVSAIMELT 540
            AMLKLGMKPI GVSRVTVKKSKNILFVISKPDVFKSP SDTY++FGEAKIEDLSSQ+Q+QAAEQFK   P+  NV SK ESS  A+VQDDE+VDE GVEPKDIELVMTQAGV R  AVKALKAADGDIVSAIMELT
Sbjct:   69 AMLKLGMKPITGVSRVTVKKSKNILFVISKPDVFKSPASDTYVIFGEAKIEDLSSQIQSQAAEQFKA--PDLSNVISKGESSSAAVVQDDEEVDEEGVEPKDIELVMTQAGVSRPNAVKALKAADGDIVSAIMELT 202          
BLAST of FC872099 vs. ExPASy Swiss-Prot
Match: NACA_PINTA (Nascent polypeptide-associated complex subunit alpha-like protein OS=Pinus taeda PE=2 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 2.387e-53
Identity = 111/135 (82.22%), Postives = 120/135 (88.89%), Query Frame = 1
Query:  139 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQLQTQAAEQFKVPPPNTGNVASKPESSAMVQDDE-KVDETGVEPKDIELVMTQAGVPRSRAVKALKAADGDIVSAIMELT 540
            AMLKLGMKP+ GVSRVT+KKSKNILFVIS PDVFKSPTSDTYI FGEAKIEDLSSQLQTQAAEQFK   PN  +V  KPESS   Q+DE +VD+TGVEPKDIELVMTQAGV R++AVKALKAADGDIVSAIM+LT
Sbjct:   72 AMLKLGMKPVSGVSRVTIKKSKNILFVISNPDVFKSPTSDTYIAFGEAKIEDLSSQLQTQAAEQFKA--PNLSHVTMKPESSTAAQEDEDEVDDTGVEPKDIELVMTQAGVSRTKAVKALKAADGDIVSAIMDLT 204          
BLAST of FC872099 vs. ExPASy Swiss-Prot
Match: NACA3_ARATH (Nascent polypeptide-associated complex subunit alpha-like protein 3 OS=Arabidopsis thaliana GN=At5g13850 PE=1 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.448e-50
Identity = 112/141 (79.43%), Postives = 120/141 (85.11%), Query Frame = 1
Query:  139 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQLQTQAAEQFKVPPPNTGNVASKPESS-----AMVQ--DDEKVDETGVEPKDIELVMTQAGVPRSRAVKALKAADGDIVSAIMELT 540
            AMLKLGMKPI GVSRVTVKKSKNILFVISKPDVFKSP SDTY++FGEAKIEDLSSQLQ+QAAEQFK   PN  NV S+ E+S     A VQ  DDE+VDE GVEPKDIELVMTQAGV + RAVKALK A+GDIVSAIMELT
Sbjct:   65 AMLKLGMKPITGVSRVTVKKSKNILFVISKPDVFKSPASDTYVIFGEAKIEDLSSQLQSQAAEQFKA--PNLSNVISQGETSSAATAAAVQDDDDEEVDEEGVEPKDIELVMTQAGVSKPRAVKALKLANGDIVSAIMELT 203          
BLAST of FC872099 vs. ExPASy Swiss-Prot
Match: NACA2_ARATH (Nascent polypeptide-associated complex subunit alpha-like protein 2 OS=Arabidopsis thaliana GN=At3g49470 PE=2 SV=2)

HSP 1 Score: 184.496 bits (467), Expect = 4.820e-46
Identity = 95/140 (67.86%), Postives = 118/140 (84.29%), Query Frame = 1
Query:  139 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQLQTQAAEQFKVPPPNTGNVASKPESSA------MVQDDEKVDETGVEPKDIELVMTQAGVPRSRAVKALKAADGDIVSAIMELT 540
            AMLKLGMKP+ GVSRVT+K++KN+LF ISKPDVFKSP S+TY++FGEAKIEDLSSQLQTQAA+QF++  P  G  + + E+S       + +D+E++DETGVE +DI+LVMTQAGV RS+AVKALK+ DGDIVSAIMELT
Sbjct:   79 AMLKLGMKPVTGVSRVTIKRTKNVLFFISKPDVFKSPHSETYVIFGEAKIEDLSSQLQTQAAQQFRM--PEIGATSQRAEASTATVEAQVEEDEEEIDETGVEARDIDLVMTQAGVSRSKAVKALKSHDGDIVSAIMELT 216          
BLAST of FC872099 vs. ExPASy Swiss-Prot
Match: NACA4_ARATH (Nascent polypeptide-associated complex subunit alpha-like protein 4 OS=Arabidopsis thaliana GN=At4g10480 PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.025e-44
Identity = 96/140 (68.57%), Postives = 115/140 (82.14%), Query Frame = 1
Query:  139 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQLQTQAAEQFKVPP-----PNT-GNVASKPESSAMVQDDEKVDETGVEPKDIELVMTQAGVPRSRAVKALKAADGDIVSAIMELT 540
            AMLKLGMKP+  VSRVT+K+SKN+LFVISKPDVFKSP S+TY++FGEAKI+D+SSQLQ QAA++FK+P      PNT G+ A+        +DDE VDETGVE KDI+LVMTQAGV R +AVKALK ++GDIVSAIMELT
Sbjct:   74 AMLKLGMKPVTDVSRVTIKRSKNVLFVISKPDVFKSPNSETYVIFGEAKIDDMSSQLQAQAAQRFKMPDVASMIPNTDGSEAATVAQEE--EDDEDVDETGVEAKDIDLVMTQAGVSRPKAVKALKESNGDIVSAIMELT 211          
BLAST of FC872099 vs. ExPASy Swiss-Prot
Match: NACA5_ARATH (Nascent polypeptide-associated complex subunit alpha-like protein 5 OS=Arabidopsis thaliana GN=At1g33040 PE=2 SV=2)

HSP 1 Score: 174.866 bits (442), Expect = 3.819e-43
Identity = 89/139 (64.03%), Postives = 116/139 (83.45%), Query Frame = 1
Query:  139 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQLQTQAAEQFKVPP-----PNTGNVASKPESSAMVQDDEKVDETGVEPKDIELVMTQAGVPRSRAVKALKAADGDIVSAIMELT 540
            A+LKLGMKP+  VSRVT+K++KN+LFVISKPDV+KSP ++TY++FGEAK++DLSSQLQTQAA++FK+P      PN G+ A+     A  +D++ VD+TGVE +DI+LVMTQAGV +++AV ALKA DGDIVSAIMELT
Sbjct:   71 AVLKLGMKPVSDVSRVTIKRAKNVLFVISKPDVYKSPNAETYVIFGEAKVDDLSSQLQTQAAQRFKMPDVTSMLPNAGSEATM-APLAEEEDEDDVDDTGVEARDIDLVMTQAGVSKAKAVSALKANDGDIVSAIMELT 208          
BLAST of FC872099 vs. ExPASy Swiss-Prot
Match: NACA_ORENI (Nascent polypeptide-associated complex subunit alpha OS=Oreochromis niloticus GN=naca PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.026e-40
Identity = 86/136 (63.24%), Postives = 108/136 (79.41%), Query Frame = 1
Query:  139 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQLQTQAAEQFKVPPPNTGNVASKPESSAMVQ--DDEKVDETGVEPKDIELVMTQAGVPRSRAVKALKAADGDIVSAIMELT 540
            AM KLG++ + GV+RVT++KSKNILFVI+KPDV+KSP SDTYIVFGEAKIEDLS Q Q  AAE+FKVP     NV    ++  + +  ++E+VDETGVE KDIELVM+QA V R++AV+ALK  + DIV+AIMELT
Sbjct:   79 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQLAAAEKFKVPGETVSNVQENTQTPTVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRALKNNNNDIVNAIMELT 214          
BLAST of FC872099 vs. ExPASy Swiss-Prot
Match: NACA_DANRE (Nascent polypeptide-associated complex subunit alpha OS=Danio rerio GN=naca PE=1 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.707e-39
Identity = 84/136 (61.76%), Postives = 107/136 (78.68%), Query Frame = 1
Query:  139 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQLQTQAAEQFKVPPPNTGNVASKPESSAMVQ--DDEKVDETGVEPKDIELVMTQAGVPRSRAVKALKAADGDIVSAIMELT 540
            AM KLG++ + GV+RVT++KSKNILFVI+KPDV+KSP SDTYIVFGEAKIEDLS Q Q  AAE+FKV      N+    ++  + +  ++E+VDETGVE KDIELVM+QA V R++AV+ALK  + DIV+AIMELT
Sbjct:   79 AMSKLGLRQVAGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQLAAAEKFKVQGEAVSNIQENTQTPTVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRALKNNNNDIVNAIMELT 214          
BLAST of FC872099 vs. ExPASy Swiss-Prot
Match: NACAD_MOUSE (NAC-alpha domain-containing protein 1 OS=Mus musculus GN=Nacad PE=1 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.707e-39
Identity = 84/141 (59.57%), Postives = 106/141 (75.18%), Query Frame = 1
Query:  139 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQLQTQAAEQFKVP-------PPNTGNVASKPESSAMVQDDEKVDETGVEPKDIELVMTQAGVPRSRAVKALKAADGDIVSAIMELT 540
            AM KLG++ I GV+R+T++KSKNILFVI+KPDVFKSP SDTY+VFGEAKIEDLS Q+   AAE+FKVP       P  +     +PE     ++DE+V+E G+EP+DIELVM QA V R++AV+ALK    DIV+AIMELT
Sbjct: 1363 AMSKLGLRQIQGVTRITIQKSKNILFVIAKPDVFKSPASDTYVVFGEAKIEDLSQQVHKAAAEKFKVPSEPSALVPELSPGPRVRPECEEQEEEDEEVEEAGLEPRDIELVMAQANVTRAKAVRALKDNHSDIVNAIMELT 1503          
BLAST of FC872099 vs. ExPASy Swiss-Prot
Match: NACA_XENTR (Nascent polypeptide-associated complex subunit alpha OS=Xenopus tropicalis GN=naca PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 7.453e-39
Identity = 84/136 (61.76%), Postives = 106/136 (77.94%), Query Frame = 1
Query:  139 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQLQTQAAEQFKVPPPNTGNVASKPESSAMVQ--DDEKVDETGVEPKDIELVMTQAGVPRSRAVKALKAADGDIVSAIMELT 540
            AM KLG++ + GV+RVT++KSKNILFVI+KPDV+KSP SDTYIVFGEAKIEDLS Q Q  AAE+FKV      N+    ++  + +  ++E+VDETGVE KDIELVM+QA V R++AV+ALK    DIV+AIMELT
Sbjct:   78 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQLAAAEKFKVQGEAVSNIQENTQTPTVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRALKNNSNDIVNAIMELT 213          
The following BLAST results are available for this feature:
BLAST of FC872099 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
NACA1_ARATH1.399e-5383.82Nascent polypeptide-associated complex subunit alp... [more]
NACA_PINTA2.387e-5382.22Nascent polypeptide-associated complex subunit alp... [more]
NACA3_ARATH1.448e-5079.43Nascent polypeptide-associated complex subunit alp... [more]
NACA2_ARATH4.820e-4667.86Nascent polypeptide-associated complex subunit alp... [more]
NACA4_ARATH2.025e-4468.57Nascent polypeptide-associated complex subunit alp... [more]
NACA5_ARATH3.819e-4364.03Nascent polypeptide-associated complex subunit alp... [more]
NACA_ORENI3.026e-4063.24Nascent polypeptide-associated complex subunit alp... [more]
NACA_DANRE5.707e-3961.76Nascent polypeptide-associated complex subunit alp... [more]
NACAD_MOUSE5.707e-3959.57NAC-alpha domain-containing protein 1 OS=Mus muscu... [more]
NACA_XENTR7.453e-3961.76Nascent polypeptide-associated complex subunit alp... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2CE10ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB2CE10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872099 ID=FC872099; Name=FC872099; organism=Citrus clementina; type=EST; length=706bp
GGGGTAGTCGAGGACGACGTTGATGAGGATGATGATGAGGAGGATGAGGA
TGATGACAAGGATGAAGACGATGTGGAAGGGAAAGGAGATGGAAGTGGTC
GCTCAAAACAGAGCAGGAGTGAAAAGAAGAGTCGGAAAGCAATGTTGAAA
CTTGGAATGAAGCCAATCCCTGGCGTCAGTCGAGTTACAGTTAAAAAGAG
CAAAAATATTTTGTTTGTTATCTCCAAACCAGATGTTTTCAAGAGTCCTA
CATCTGACACATACATTGTCTTTGGGGAAGCAAAGATCGAGGATCTGAGT
TCACAACTGCAAACTCAGGCTGCAGAGCAGTTCAAGGTCCCTCCTCCTAA
CACAGGTAATGTGGCATCAAAGCCTGAGTCATCGGCCATGGTTCAAGATG
ACGAAAAAGTAGATGAGACTGGTGTGGAGCCAAAGGACATTGAGTTGGTA
ATGACTCAAGCTGGGGTACCGAGGTCAAGGGCTGTGAAAGCACTCAAAGC
CGCAGATGGTGACATCGTTTCTGCCATTATGGAGCTAACAAATTGATGGT
CACTTTCTTAATTATGTTGCTCTGCTGAATGATCCCATAAGGAAATCTTT
TTTTTTTTTTTTCTCGCTGTTACCATTTACAATTGAAGTTGCAGATTTTT
GCTGGCTTTATAACTTTTCTCTCTGAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAA
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