FC872105

Overview
NameFC872105
Unique NameFC872105
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length764
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig331 contig Ccv1_Contig331:60..823. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872105 vs. ExPASy Swiss-Prot
Match: CHIB_MAIZE (Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 9.037e-65
Identity = 117/202 (57.92%), Postives = 142/202 (70.30%), Query Frame = 3
Query:    6 SVADLVTPEFFDGIKNQAPATCEGKGFYTRDAFISALSSYPEFG----RTDTKREVAAFFAHVTHETTDFCFVEEISKTNPYCTPTP-QYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWMRYVHSALNQGFGETIRKINGPAECGGQNRAQVQDRVRRYTDYCKRFGVDPGPNLEC 596
            +VA +VT  FF+GIKNQA + CEGK FYTR AF+SA+  YP F     +   KRE+AAFFAH THET  FC++ EI+K+N YC PT  Q+PCA G+ YYGRGP+Q++ N NY  AGRAIGFDGL  P  VARD V++FK ALW+WM  VH  + QGFG T R +    ECGG N AQ+  RV  Y  YC++ GVDPGPNL C
Sbjct:   68 NVASVVTSSFFNGIKNQAGSGCEGKNFYTRSAFLSAVKGYPGFAHGGSQVQGKREIAAFFAHATHETGHFCYISEINKSNAYCDPTKRQWPCAAGQKYYGRGPLQISWNYNYGPAGRAIGFDGLGDPGRVARDAVVAFKAALWFWMNSVHGVVPQGFGATTRAMQRALECGGNNPAQMNARVGYYRQYCRQLGVDPGPNLTC 269          
BLAST of FC872105 vs. ExPASy Swiss-Prot
Match: CHIA_MAIZE (Endochitinase A OS=Zea mays PE=1 SV=1)

HSP 1 Score: 244.202 bits (622), Expect = 5.857e-64
Identity = 118/202 (58.42%), Postives = 146/202 (72.28%), Query Frame = 3
Query:    6 SVADLVTPEFFDGIKNQAPATCEGKGFYTRDAFISALSSYPEFGRTDT----KREVAAFFAHVTHETTDFCFVEEISKTNPYCTPTP-QYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWMRYVHSALNQGFGETIRKINGPAECGGQNRAQVQDRVRRYTDYCKRFGVDPGPNLEC 596
            +VA++VT  FF+GIKNQA + CEGK FYTR AF+SA+++YP F    T    KRE+AAFFAHVTHET  FC++ EI+K+N YC  +  Q+PCA G+ YYGRGP+Q++ N NY  AGR IGF+GL  P  VA+D VI+FKTALW+WM  VH  + QGFG TIR ING  EC G N AQ+  RV  Y  YC++  VDPGPNL C
Sbjct:   79 NVANVVTDAFFNGIKNQAGSGCEGKNFYTRSAFLSAVNAYPGFAHGGTEVEGKREIAAFFAHVTHETGHFCYISEINKSNAYCDASNRQWPCAAGQKYYGRGPLQISWNYNYGPAGRDIGFNGLADPNRVAQDAVIAFKTALWFWMNNVHGVMPQGFGATIRAINGALECNGNNPAQMNARVGYYKQYCQQLRVDPGPNLIC 280          
BLAST of FC872105 vs. ExPASy Swiss-Prot
Match: CHI4_PHAVU (Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE=2 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 1.350e-60
Identity = 115/202 (56.93%), Postives = 142/202 (70.30%), Query Frame = 3
Query:   12 ADLVTPEFFDGIKNQAPATCEGKGFYTRDAFISALSSYPEFGRT----DTKREVAAFFAHVTHETTDFCFVEEIS-KTNPYCTPTP--QYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWMRYVHSALNQGFGETIRKINGPAECGGQNRAQVQDRVRRYTDYCKRFGVDPGPNLEC 596
            AD++T +F +GI +QA + C GK FYTRDAF+SAL+SY +FGR     D+KRE+AA FAH THET  FC++EEI   +  YC      QYPC++ K Y+GRGPIQL+ N NY  AG A  FDGL +PETV+ D V+SFKTALWYWM++V   +NQGFG TIR ING  EC G N   VQ RV  YT+YC++ GV  G NL C
Sbjct:   69 ADILTADFLNGIIDQADSGCAGKNFYTRDAFLSALNSYTDFGRVGSEDDSKREIAAAFAHFTHETGHFCYIEEIDGASKDYCDEESIAQYPCSSSKGYHGRGPIQLSWNFNYGPAGSANNFDGLGAPETVSNDVVVSFKTALWYWMQHVRPVINQGFGATIRAINGALECDGANPTTVQARVNYYTEYCRQLGVATGDNLTC 270          
BLAST of FC872105 vs. ExPASy Swiss-Prot
Match: CHI6_ORYSJ (Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht6 PE=2 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 1.764e-60
Identity = 115/205 (56.10%), Postives = 139/205 (67.80%), Query Frame = 3
Query:    6 SVADLVTPEFFDGIKNQAPATCEGKGFYTRDAFISALSSYPEFGRT----DTKREVAAFFAHVTHETTDFCFVEEIS-KTNPYCTPTP-QYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWMRYVHSAL--NQGFGETIRKINGPAECGGQNRAQVQDRVRRYTDYCKRFGVDPGPNLEC 596
            SVA +VTPEFF  +  QA   C  KGFYTRDAF++A   YP FGRT    D+KRE+AAFFAH  HET  FC++EEI   +  YC  T  Q+PC  GK YYGRGP+Q++ N NY  AG++IGFDGL  P+ VAR  V++F+TALWYW   VH A    QGFG TIR ING  EC G+N   V +RV  Y  +C++FGVDPG NL C
Sbjct:   67 SVASIVTPEFFAALVAQADDGCAAKGFYTRDAFLTAAGGYPSFGRTGSVDDSKREIAAFFAHANHETIKFCYIEEIDGPSKNYCDETSTQWPCMAGKGYYGRGPLQISWNFNYGPAGQSIGFDGLGDPDAVARSPVLAFQTALWYWTNNVHDAFVSGQGFGATIRAINGALECDGKNPTAVSNRVAYYQQFCQQFGVDPGSNLTC 271          
BLAST of FC872105 vs. ExPASy Swiss-Prot
Match: CHI5_ORYSJ (Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht5 PE=2 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 1.764e-60
Identity = 115/203 (56.65%), Postives = 138/203 (67.98%), Query Frame = 3
Query:    6 SVADLVTPEFFDGIKNQAPATCEGKGFYTRDAFISALSSYPEFGRT----DTKREVAAFFAHVTHETTDFCFVEEISKTN-PYCTPT-PQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWMRYVHSALNQGFGETIRKINGPAECGGQNRAQVQDRVRRYTDYCKRFGVDPGPNLEC 596
            SV  +VT  FF+GIKNQAP  C GK FYTR +F++A  SY  F R     D+KRE+AAFFAHVTHET   C++ EI+  +  YC     Q+PC  GK YYGRGP+Q++ N NY  AG+ IGFDGL  P+ VA+D  ISFKTALW+WM  VH  + QGFG TIR ING  EC G+N   V  RV  Y DYC++FGVDPG NL C
Sbjct:   86 SVESVVTEAFFNGIKNQAPNGCAGKNFYTRQSFLNAAHSYSGFARDRTNDDSKREIAAFFAHVTHETGHMCYINEINGASMDYCDKNNKQWPCQPGKKYYGRGPLQISWNYNYGPAGQNIGFDGLRDPDRVAQDPTISFKTALWFWMNNVHQVMLQGFGATIRAINGALECNGKNPGAVNARVNYYKDYCRQFGVDPGGNLYC 288          
BLAST of FC872105 vs. ExPASy Swiss-Prot
Match: CHI4_ORYSJ (Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht4 PE=2 SV=2)

HSP 1 Score: 232.646 bits (592), Expect = 1.764e-60
Identity = 114/203 (56.16%), Postives = 138/203 (67.98%), Query Frame = 3
Query:    6 SVADLVTPEFFDGIKNQAPATCEGKGFYTRDAFISALSSYPEFGRT----DTKREVAAFFAHVTHETTDFCFVEEISKTN-PYCTPT-PQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWMRYVHSALNQGFGETIRKINGPAECGGQNRAQVQDRVRRYTDYCKRFGVDPGPNLEC 596
            SV  +VT  FF+GIKNQAP  C GK FYTR +F++A  SY  F       D+KRE+AAFFAHVTHET   C++ EI+  N  YC  +  Q+PC  GK YYGRGP+Q++ N NY  AG+ IGFDGL  P+ VA+D  ISFKTALW+WM  VH  ++QGFG TIR ING  EC G+N   V  RV  Y DYC++FGV PG NL C
Sbjct:   83 SVESVVTEAFFNGIKNQAPNGCAGKSFYTRQSFLNAARSYSGFANDRTNDDSKREIAAFFAHVTHETGHMCYINEINGANMDYCDKSNKQWPCQPGKKYYGRGPLQISWNFNYGPAGKNIGFDGLRDPDKVAQDPTISFKTALWFWMNNVHQVMSQGFGATIRAINGALECNGKNPGAVNARVNYYKDYCRQFGVSPGGNLYC 285          
BLAST of FC872105 vs. ExPASy Swiss-Prot
Match: CHIT_DIOJA (Acidic endochitinase OS=Dioscorea japonica PE=1 SV=2)

HSP 1 Score: 230.335 bits (586), Expect = 8.753e-60
Identity = 114/206 (55.34%), Postives = 140/206 (67.96%), Query Frame = 3
Query:    6 SVADLVTPEFFDGIKNQAPATCEGKGFYTRDAFISALSSYPEFGRT----DTKREVAAFFAHVTHETTDFCFVEEIS-KTNPYCTPTPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWMR----YVHSALNQGFGETIRKINGPAECGGQNRAQVQDRVRRYTDYCKRFGVDPGPNLEC 596
            +V+D+VT EF+DGI +QA A C GK FYTR  F+ A+S+YP FG      D KRE+AA+FAHVTHET   C++EE     N YC  + QYPC   K Y+GRGP+QL+ N NYIDAG+ + FDGLN P+ V RD +ISFKT+LW+W+R    YV    NQGFG TIR ING  EC G N AQ+  RV  Y +YC + GV PG NL C
Sbjct:   45 TVSDIVTQEFWDGIASQAAANCPGKSFYTRSNFLEAVSAYPGFGTKCTDEDRKREIAAYFAHVTHETGHLCYIEERDGHANNYCQESQQYPCNPNKEYFGRGPMQLSWNYNYIDAGKELHFDGLNDPDIVGRDPIISFKTSLWFWIRKGVQYVILDPNQGFGATIRIINGGQECDGHNTAQMMARVGYYQEYCAQLGVSPGNNLPC 250          
BLAST of FC872105 vs. ExPASy Swiss-Prot
Match: CHIP_BETVU (Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 PE=1 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 4.344e-59
Identity = 115/205 (56.10%), Postives = 139/205 (67.80%), Query Frame = 3
Query:    6 SVADLVTPEFFDGIKNQAPATCEGKGFYTRDAFISALSSYPEFGRT----DTKREVAAFFAHVTHETTDFCFVEEISKT--NPYCTP--TPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWMRYVHSALNQGFGETIRKINGPAECGGQNRAQVQDRVRRYTDYCKRFGVDPGPNLEC 596
            SV+D+V+  FFDGI  QA A+C GK FYTR AF+SA+   P+FG      D KRE+AAFFAH++HETT+ C +EE      + YC      QYPCA GK YYGRGP+QL+ N NY  AG+AIGFDGL +PE VA D   SFK A+W+WM  VHS +NQGFG T + ING  EC GQN+ Q  DR++ Y  YC  FGV PG NL C
Sbjct:   86 SVSDIVSQAFFDGIIGQAAASCPGKNFYTRAAFLSAVD--PKFGNEGSSDDNKREIAAFFAHISHETTNLCHIEERDGDVGDAYCDQDKAAQYPCAAGKKYYGRGPLQLSWNYNYALAGQAIGFDGLGNPEKVATDVNTSFKAAMWFWMTNVHSVMNQGFGATTKAINGALECNGQNQDQANDRIQFYKKYCADFGVAPGDNLTC 288          
BLAST of FC872105 vs. ExPASy Swiss-Prot
Match: CHI4_BRANA (Basic endochitinase CHB4 OS=Brassica napus PE=1 SV=2)

HSP 1 Score: 215.312 bits (547), Expect = 2.914e-55
Identity = 104/199 (52.26%), Postives = 132/199 (66.33%), Query Frame = 3
Query:    6 SVADLVTPEFFDGIKNQAPATCEGKGFYTRDAFISALSSYPEFGRTDTKREVAAFFAHVTHETTDFCFVEEIS-KTNPYCTPTP-QYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWMRYVHSALNQGFGETIRKINGPAECGGQNRAQVQDRVRRYTDYCKRFGVDPGPNLEC 596
            SV  +VT  FF+GI NQA   C GK FYTRD+FI+A +++P F  + T+RE+A  FAH THET  FC++EEI+  +  YC     QYPCA GK Y+GRGPIQL+ N NY   G+++  + L  PE V+ +  ++F+T LW+WM  V   LNQGFG TIR ING  EC G N   V  R+R Y DYC + GVDPGPNL C
Sbjct:   71 SVGSIVTQAFFNGIINQAGGGCAGKNFYTRDSFINAANTFPNFANSVTRREIATMFAHFTHETGHFCYIEEINGASRDYCDENNRQYPCAPGKGYFGRGPIQLSWNYNYGACGQSLNLNLLGQPELVSSNPTVAFRTGLWFWMNSVRPVLNQGFGATIRAING-MECNGGNSGAVNARIRYYRDYCGQLGVDPGPNLSC 268          
BLAST of FC872105 vs. ExPASy Swiss-Prot
Match: CHI2_TOBAC (Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.959e-43
Identity = 98/235 (41.70%), Postives = 133/235 (56.60%), Query Frame = 3
Query:    9 VADLVTPEFFDG-IKNQAPATCEGKGFYTRDAFISALSSYPEFGR----TDTKREVAAFFAHVTHETTD-------------FCFVEEISKTNPYCTPTPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWYWM---------------RYVHSALNQ------GFGETIRKINGPAECGGQNRAQVQDRVRRYTDYCKRFGVDPGPNLEC 596
            +  +++   FD  +K++    C+GKGFY+ +AFI+A  S+P FG     T  KRE+AAFFA  +HETT              +C++ E      YCTP+ Q+PCA G+ Y+GRGPIQ++ N NY   GRAIG D LN+P+ VA D VISFK+ALW+WM               R+  S+ ++      GFG     ING  ECG    ++VQDR+  Y  YC   GV PG NL+C
Sbjct:   75 LGSIISSSMFDQMLKHRNDNACQGKGFYSYNAFINAARSFPGFGTSGDTTARKREIAAFFAQTSHETTGGWATAPDGPYAWGYCWLREQGSPGDYCTPSGQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKSALWFWMTPQSPKPSCHDVIIGRWQPSSADRAANRLPGFGVITNIINGGLECGRGTDSRVQDRIGFYRRYCSILGVSPGDNLDC 309          
The following BLAST results are available for this feature:
BLAST of FC872105 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHIB_MAIZE9.037e-6557.92Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1[more]
CHIA_MAIZE5.857e-6458.42Endochitinase A OS=Zea mays PE=1 SV=1[more]
CHI4_PHAVU1.350e-6056.93Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE... [more]
CHI6_ORYSJ1.764e-6056.10Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI5_ORYSJ1.764e-6056.65Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI4_ORYSJ1.764e-6056.16Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIT_DIOJA8.753e-6055.34Acidic endochitinase OS=Dioscorea japonica PE=1 SV... [more]
CHIP_BETVU4.344e-5956.10Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 P... [more]
CHI4_BRANA2.914e-5552.26Basic endochitinase CHB4 OS=Brassica napus PE=1 SV... [more]
CHI2_TOBAC1.959e-4341.70Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAB2CF04ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB2CF04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872105 ID=FC872105; Name=FC872105; organism=Citrus clementina; type=EST; length=764bp
GGGACTCCGTAGCCGATCTTGTGACTCCGGAATTTTTTGACGGCATTAAG
AATCAGGCTCCAGCAACTTGTGAAGGGAAGGGGTTCTATACAAGAGATGC
ATTTATTAGTGCTCTCAGTTCATATCCTGAATTCGGTAGAACTGATACTA
AGCGTGAAGTTGCCGCATTTTTTGCCCATGTCACTCATGAAACAACAGAT
TTTTGCTTCGTAGAAGAGATTAGTAAGACAAATCCTTATTGTACACCGAC
TCCTCAATATCCATGTGCCAATGGTAAATTCTACTATGGCCGGGGACCGA
TTCAGCTCACCGGAAACGGAAACTACATAGATGCCGGAAGGGCCATCGGT
TTCGACGGTCTGAACTCTCCGGAAACGGTGGCCAGGGACCGTGTCATATC
TTTCAAGACTGCTTTGTGGTATTGGATGAGATACGTGCACTCAGCACTAA
ACCAAGGTTTTGGTGAAACAATTCGGAAAATTAATGGTCCTGCTGAATGC
GGCGGCCAAAACCGTGCACAAGTTCAGGATCGCGTTAGGCGTTACACTGA
TTATTGCAAAAGATTTGGTGTTGATCCTGGACCAAATCTCGAGTGCTGAT
TAGATATTTGGTATGAAAATGTTACACTATGTGTATTATATTATATCACA
GTAAGCCAGAGTTATTCCAAACAACTTTCTTTGTTTGGTAACTCTGATGG
AATAATTTTTGTGTACCTGATCATAAAATAAAGAGAAAAAAAAAAAAAAA
AAAAAAAAAAAAAA
back to top