FC872141

Overview
NameFC872141
Unique NameFC872141
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length517
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15024 contig Ccv1_Contig15024:307..823. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872141 vs. ExPASy Swiss-Prot
Match: RL72_ARATH (60S ribosomal protein L7-2 OS=Arabidopsis thaliana GN=RPL7B PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 3.328e-22
Identity = 48/63 (76.19%), Postives = 50/63 (79.37%), Query Frame = 1
Query:   10 CMEDLIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXXRNHYVEGGDAGNREDYINELIRRMN 198
            C EDLIHEILTVGPHFKEANNFLWPF            RNHYVEGGDAGNRE++INELIRRMN
Sbjct:  180 CTEDLIHEILTVGPHFKEANNFLWPFQLKAPLGGLKKKRNHYVEGGDAGNRENFINELIRRMN 242          
BLAST of FC872141 vs. ExPASy Swiss-Prot
Match: RL74_ARATH (60S ribosomal protein L7-4 OS=Arabidopsis thaliana GN=RPL7D PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 4.347e-22
Identity = 46/63 (73.02%), Postives = 51/63 (80.95%), Query Frame = 1
Query:   10 CMEDLIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXXRNHYVEGGDAGNREDYINELIRRMN 198
            C+EDLIHEI+TVGPHFKEANNFLWPF            RNHYVEGGDAGNRE++INEL+RRMN
Sbjct:  182 CVEDLIHEIMTVGPHFKEANNFLWPFQLKAPLGGMKKKRNHYVEGGDAGNRENFINELVRRMN 244          
BLAST of FC872141 vs. ExPASy Swiss-Prot
Match: RL73_ARATH (60S ribosomal protein L7-3 OS=Arabidopsis thaliana GN=RPL7C PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 4.347e-22
Identity = 46/63 (73.02%), Postives = 51/63 (80.95%), Query Frame = 1
Query:   10 CMEDLIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXXRNHYVEGGDAGNREDYINELIRRMN 198
            C+EDLIHEI+TVGPHFKEANNFLWPF            RNHYVEGGDAGNRE++INEL+RRMN
Sbjct:  180 CVEDLIHEIMTVGPHFKEANNFLWPFQLKAPLGGLKKKRNHYVEGGDAGNRENFINELVRRMN 242          
BLAST of FC872141 vs. ExPASy Swiss-Prot
Match: RL7_RAT (60S ribosomal protein L7 OS=Rattus norvegicus GN=Rpl7 PE=1 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 3.808e-18
Identity = 43/63 (68.25%), Postives = 44/63 (69.84%), Query Frame = 1
Query:   10 CMEDLIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXXRNHYVEGGDAGNREDYINELIRRMN 198
            CMEDLIHEI TVG  FKEANNFLWPF              H+VEGGDAGNRED IN LIRRMN
Sbjct:  198 CMEDLIHEIYTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQINRLIRRMN 260          
BLAST of FC872141 vs. ExPASy Swiss-Prot
Match: RL7_PONAB (60S ribosomal protein L7 OS=Pongo abelii GN=RPL7 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.808e-18
Identity = 43/63 (68.25%), Postives = 44/63 (69.84%), Query Frame = 1
Query:   10 CMEDLIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXXRNHYVEGGDAGNREDYINELIRRMN 198
            CMEDLIHEI TVG  FKEANNFLWPF              H+VEGGDAGNRED IN LIRRMN
Sbjct:  185 CMEDLIHEIYTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQINRLIRRMN 247          
BLAST of FC872141 vs. ExPASy Swiss-Prot
Match: RL7_MOUSE (60S ribosomal protein L7 OS=Mus musculus GN=Rpl7 PE=2 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 3.808e-18
Identity = 43/63 (68.25%), Postives = 44/63 (69.84%), Query Frame = 1
Query:   10 CMEDLIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXXRNHYVEGGDAGNREDYINELIRRMN 198
            CMEDLIHEI TVG  FKEANNFLWPF              H+VEGGDAGNRED IN LIRRMN
Sbjct:  208 CMEDLIHEIYTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQINRLIRRMN 270          
BLAST of FC872141 vs. ExPASy Swiss-Prot
Match: RL7_MACFA (60S ribosomal protein L7 OS=Macaca fascicularis GN=RPL7 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.808e-18
Identity = 43/63 (68.25%), Postives = 44/63 (69.84%), Query Frame = 1
Query:   10 CMEDLIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXXRNHYVEGGDAGNREDYINELIRRMN 198
            CMEDLIHEI TVG  FKEANNFLWPF              H+VEGGDAGNRED IN LIRRMN
Sbjct:  185 CMEDLIHEICTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQINRLIRRMN 247          
BLAST of FC872141 vs. ExPASy Swiss-Prot
Match: RL7_HUMAN (60S ribosomal protein L7 OS=Homo sapiens GN=RPL7 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.808e-18
Identity = 43/63 (68.25%), Postives = 44/63 (69.84%), Query Frame = 1
Query:   10 CMEDLIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXXRNHYVEGGDAGNREDYINELIRRMN 198
            CMEDLIHEI TVG  FKEANNFLWPF              H+VEGGDAGNRED IN LIRRMN
Sbjct:  186 CMEDLIHEIYTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQINRLIRRMN 248          
BLAST of FC872141 vs. ExPASy Swiss-Prot
Match: RL7_BOVIN (60S ribosomal protein L7 OS=Bos taurus GN=RPL7 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.808e-18
Identity = 43/63 (68.25%), Postives = 44/63 (69.84%), Query Frame = 1
Query:   10 CMEDLIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXXRNHYVEGGDAGNREDYINELIRRMN 198
            CMEDLIHEI TVG  FKEANNFLWPF              H+VEGGDAGNRED IN LIRRMN
Sbjct:  186 CMEDLIHEIYTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQINRLIRRMN 248          
BLAST of FC872141 vs. ExPASy Swiss-Prot
Match: RL7_CAEEL (60S ribosomal protein L7 OS=Caenorhabditis elegans GN=rpl-7 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.210e-17
Identity = 39/62 (62.90%), Postives = 43/62 (69.35%), Query Frame = 1
Query:   10 CMEDLIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXXRNHYVEGGDAGNREDYINELIRRM 195
            C+EDL HEI TVGPHFKEA NFLWPF             NH+VEGGD GNRED IN L+R+M
Sbjct:  182 CLEDLAHEIATVGPHFKEATNFLWPFKLNNPTGGWTKKTNHFVEGGDFGNREDQINNLLRKM 243          
The following BLAST results are available for this feature:
BLAST of FC872141 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
RL72_ARATH3.328e-2276.1960S ribosomal protein L7-2 OS=Arabidopsis thaliana... [more]
RL74_ARATH4.347e-2273.0260S ribosomal protein L7-4 OS=Arabidopsis thaliana... [more]
RL73_ARATH4.347e-2273.0260S ribosomal protein L7-3 OS=Arabidopsis thaliana... [more]
RL7_RAT3.808e-1868.2560S ribosomal protein L7 OS=Rattus norvegicus GN=R... [more]
RL7_PONAB3.808e-1868.2560S ribosomal protein L7 OS=Pongo abelii GN=RPL7 P... [more]
RL7_MOUSE3.808e-1868.2560S ribosomal protein L7 OS=Mus musculus GN=Rpl7 P... [more]
RL7_MACFA3.808e-1868.2560S ribosomal protein L7 OS=Macaca fascicularis GN... [more]
RL7_HUMAN3.808e-1868.2560S ribosomal protein L7 OS=Homo sapiens GN=RPL7 P... [more]
RL7_BOVIN3.808e-1868.2560S ribosomal protein L7 OS=Bos taurus GN=RPL7 PE=... [more]
RL7_CAEEL4.210e-1762.9060S ribosomal protein L7 OS=Caenorhabditis elegans... [more]

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Properties
Property NameValue
Genbank descriptionC05701B03SK AbsCOv1 Citrus clementina cDNA clone C05701B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872141 ID=FC872141; Name=FC872141; organism=Citrus clementina; type=EST; length=517bp
CGGCCGGGCTGCATGGAAGATCTCATCCATGAGATTTTGACTGTTGGTCC
TCACTTCAAGGAGGCAAACAACTTCCTATGGCCCTTCAAGCTCAAGGCAC
CATTGGGTGGCCTGAAGAAGAAGAGGAACCACTATGTTGAAGGCGGTGAT
GCAGGAAACCGTGAAGATTACATCAATGAGCTCATCAGAAGGATGAACTA
GGCTTCTGCAGAATATCCTACCCCTTTTGAAGAAGTTTTGATGTGATCAA
TATCTTAAATTTTGGCTTTTAGTGTTTCCTATTATTCCCAGCCTTTTCCC
TGGAAGTTAAGTAGAAACTTTCTTACTTTTTATAACAGTGACAGTGTTGT
TATTTTGGCTTCAGACTGGATTATCATTCCAAATTTTATTTTTTGTTTTC
ATGTGTTTTAGTTTCAGTTATGAAAGTGGCGGATCTGTTTTGAAAAAAAA
AAAAAAAAAAAAAAAAAAANTTTTGGGGGCCCCCCGGCCCAATTAATTTT
TAATTTGGAAAAATTTT
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