FC872145

Overview
NameFC872145
Unique NameFC872145
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length732
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9869 contig Ccv1_Contig9869:1..732. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872145 vs. ExPASy Swiss-Prot
Match: DHB4_HUMAN (Peroxisomal multifunctional enzyme type 2 OS=Homo sapiens GN=HSD17B4 PE=1 SV=3)

HSP 1 Score: 139.428 bits (350), Expect = 1.887e-32
Identity = 83/206 (40.29%), Postives = 119/206 (57.77%), Query Frame = 1
Query:  121 LSQKLPEKTFTYTERDAAIYALGVGACGRDAVDADELKYVYHENGQQFIQVLPTFSALFSFELEPSGAI-DLPGLQHDPRLLLHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMTAFLRGAGGFSNSSQPFSYSKYQTIPVSV-VKIPKSQPFAVFEDYTQPSQALVYRLSGDYNPLHSDP 732
            + QKLP  ++ YTE +A +YALGVGA  +D  D   LK++Y   G      LPTF  +   +    G + ++PGL  +   +LHG+QY+ELYKP P +  ++ EA +A + DKG   ++ ++  SY+ +  EL+C N+ + FL G+GGF          K  +  V V V IP   P AV  D T  +QA +YRLSGD+NPLH DP
Sbjct:  328 IGQKLPPFSYAYTELEAIMYALGVGASIKDPKD---LKFIYE--GSSDFSCLPTFGVIIGQKSMMGGGLAEIPGLSINFAKVLHGEQYLELYKPLPRAGKLKCEAVVADVLDKGSGVVIIMDVYSYSEK--ELICHNQFSLFLVGSGGFG--------GKRTSDKVKVAVAIPNRPPDAVLTDTTSLNQAALYRLSGDWNPLHIDP 518          
BLAST of FC872145 vs. ExPASy Swiss-Prot
Match: DHB4_MOUSE (Peroxisomal multifunctional enzyme type 2 OS=Mus musculus GN=Hsd17b4 PE=1 SV=3)

HSP 1 Score: 134.806 bits (338), Expect = 4.647e-31
Identity = 78/205 (38.05%), Postives = 115/205 (56.10%), Query Frame = 1
Query:  121 LSQKLPEKTFTYTERDAAIYALGVGACGRDAVDADELKYVYHENGQQFIQVLPTFSALFSFELEPSGAI-DLPGLQHDPRLLLHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMTAFLRGAGGFSNSSQPFSYSKYQTIPVSVVKIPKSQPFAVFEDYTQPSQALVYRLSGDYNPLHSDP 732
            +  KLP  + +YTE  + +YALGVGA  ++  D   LK+VY   G      LPTF  + + +   +G + ++PGL  +    LHG+QY+ELYKP P S  ++ EA IA + DKG   ++ ++  SY+ +  EL+C N+ + F+ G+GGF                 + V +P   P AV  D T  +QA +YRLSGD+NPLH DP
Sbjct:  327 VGHKLPSFSSSYTELQSIMYALGVGASVKNPKD---LKFVYE--GSADFSCLPTFGVIVAQKSMMNGGLAEVPGLSFNFAKALHGEQYLELYKPLPRSGELKCEAVIADILDKGSGVVIVMDVYSYSGK--ELICYNQFSVFVVGSGGFGGKRTSEKLK-------AAVAVPNRPPDAVLRDATSLNQAALYRLSGDWNPLHIDP 517          
BLAST of FC872145 vs. ExPASy Swiss-Prot
Match: DHB4_RAT (Peroxisomal multifunctional enzyme type 2 OS=Rattus norvegicus GN=Hsd17b4 PE=1 SV=3)

HSP 1 Score: 133.65 bits (335), Expect = 1.035e-30
Identity = 79/206 (38.35%), Postives = 115/206 (55.83%), Query Frame = 1
Query:  118 LLSQKLPEKTFTYTERDAAIYALGVGACGRDAVDADELKYVYHENGQQFIQVLPTFSALFSFELEPSGAI-DLPGLQHDPRLLLHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMTAFLRGAGGFSNSSQPFSYSKYQTIPVSVVKIPKSQPFAVFEDYTQPSQALVYRLSGDYNPLHSDP 732
            ++  KLP  + +YTE    +YALGVGA  ++  D   LK+VY   G      LPTF  + + +   SG + ++PGL  +   +LHG+QY+ELYKP P S  ++ EA IA + DKG   ++ ++  SY+ +  EL+C N+ + F+ G+GGF                 + V +P   P AV  D T  +QA +YRLSGD NPLH DP
Sbjct:  326 VVGHKLPSFSSSYTELQCIMYALGVGASVKNPKD---LKFVYE--GSADFSCLPTFGVIVAQKSLMSGGLAEVPGLSINFAKVLHGEQYLELYKPLPRSGELKCEAVIADILDKGSGIVIVMDVYSYSGK--ELICYNQFSVFVVGSGGFGGKRTSEKLK-------AAVAVPSRPPDAVLRDTTSLNQAALYRLSGDSNPLHIDP 517          
BLAST of FC872145 vs. ExPASy Swiss-Prot
Match: FOX2_NEUCR (Peroxisomal hydratase-dehydrogenase-epimerase OS=Neurospora crassa GN=fox-2 PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.352e-30
Identity = 78/196 (39.80%), Postives = 109/196 (55.61%), Query Frame = 1
Query:  148 FTYTERDAAIYALGVGACGRDAVDADELKYVYHENGQQFIQVLPTFSALFSFELEPSGAIDLPGLQHDPRLLLHGQQYMELYK-PFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMTAFLRGAGGFSNSSQPFSYSKYQTIPVSVVKIPKSQPFAVFEDYTQPSQALVYRLSGDYNPLHSDP 732
            +T+TERD  +Y LG+GA   D      +KY++   G +  +V+PTF  +  F  E   + D       P +LLHG+QY+E+ K P P+S  + ++  +  + DKG AAI++    ++NAE+GE L  N MT FLRG GGF    +P      +    +  K P   P AV E  T   QA +YRLSGDYNPLH DP
Sbjct:  628 YTFTERDVCLYNLGIGAKRTD------IKYIFE--GNEDFEVVPTFGVIPPFNTEMPFSFDDIVPNFSPMMLLHGEQYLEVRKYPIPTSGRLVSKGKLLEVVDKGSAAIVKQGITTFNAETGEELFYNEMTVFLRGCGGFGGQKKPAD----RGASTAANKPPARSPDAVVEVQTTEEQAAIYRLSGDYNPLHVDP 811          
BLAST of FC872145 vs. ExPASy Swiss-Prot
Match: MFEB_DICDI (Probable 3-alpha,7-alpha,12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase OS=Dictyostelium discoideum GN=mfeB PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.726e-22
Identity = 66/213 (30.99%), Postives = 109/213 (51.17%), Query Frame = 1
Query:  103 INPELLLSQKLPEKTFTYTERDAAIYALGVGACGRDAVDADELKYVYHENGQQFIQVLPTFSALFSFELEPSGAID-LPGLQHDPRLLLHGQQYMELYKPFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMTAFLRGAGGFSNSSQPFSYSKYQTIPVSVVKIPKSQ-PFAVFEDYTQPSQALVYRLS-GDYNPLHSDP 732
            ++ + +++ K+    +  T +D A+YA+ +G CG+       LK+VY   G      LPT   +F  ++      + + G++ DP +LLHG+Q +E+    P       E+ I  L+DKGK A+L ++  +    SG+ +  N  + F+RG GGF     P             ++IPK + P A+ +  T   QA++YRL+ GD NPLH DP
Sbjct:    3 VDVKKVINHKIKPIEYNLTRKDVALYAISLG-CGKK-----HLKFVYE--GSDNFSALPTLGVIFPGQMIVDVISEGIDGIEFDPMMLLHGEQELEILNEIPVEGVFVTESKITNLYDKGKGALLILQCITSEKSSGKPIFKNIFSFFIRGIGGFGGDRGPNE---------KPIQIPKDRAPDAISKQATSEDQAVIYRLAGGDLNPLHIDP 198          
BLAST of FC872145 vs. ExPASy Swiss-Prot
Match: FOX2_YEAST (Peroxisomal hydratase-dehydrogenase-epimerase OS=Saccharomyces cerevisiae GN=FOX2 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.512e-18
Identity = 70/206 (33.98%), Postives = 108/206 (52.43%), Query Frame = 1
Query:  124 SQKLPEKTFTYTERDAAIYALGVGACGRDAVDADELKYVYHENGQQFIQVLPTFSALFSFELEPSGAIDLPGLQHDPRLLLHGQQYMELYKP-FPSSASIRNEACIAGLHDK-GKAAILEIETKSYNAESGELLCMNRMTAFLRGAGGFSNSSQPFSYSKYQTIPVSVVKIPKSQ-PFAVFEDYTQPSQALVYRLSGDYNPLHSDP 732
            S++L +  F YT +D  +Y LG+G   +      ELKY Y EN   F QVLPTF+ +   +   + A+D      +  +LLHG+QY +L  P  PS+ +++  A    + DK GKAA++    ++Y+ ++ +L+  N  + F+RGA       +     K     V   ++P  + P    E  T   QA +YRLSGD+NPLH DP
Sbjct:  616 SKELDDGLFKYTTKDCILYNLGLGCTSK------ELKYTY-ENDPDF-QVLPTFAVIPFMQATATLAMDNLVDNFNYAMLLHGEQYFKLCTPTMPSNGTLKTLAKPLQVLDKNGKAALVVGGFETYDIKTKKLIAYNEGSFFIRGA--HVPPEKEVRDGKRAKFAVQNFEVPHGKVPDFEAEISTNKDQAALYRLSGDFNPLHIDP 811          
BLAST of FC872145 vs. ExPASy Swiss-Prot
Match: FOX2_CANTR (Peroxisomal hydratase-dehydrogenase-epimerase OS=Candida tropicalis PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.317e-14
Identity = 61/200 (30.50%), Postives = 94/200 (47.00%), Query Frame = 1
Query:  139 EKTFTYTERDAAIYALGVGACGRDAVDADELKYVYHENGQQFIQVLPTFSALFSFELEPSGAIDLPGLQH-DPRLLLHGQQYMELYK-PFPSSASIRNEACIAGLHDKGKAAILEIETKSYNAESGELLCMNRMTAFLRGAGGFSNSSQPFSYSKYQTIPVSVVKIPKSQPFAVFEDYTQPSQALVYRLSGDYNPLHSDP 732
            +  + + +RD  +Y + +GA  +      +LKYVY EN   F QV+PTF  L +F    S       L++ +P LLLHG+ Y++++  P P+   I+          KG   ++   +KS + +SGEL+  N  T F+R     +       Y+       +    PK  P    +       A +YRLSGD NPLH DP
Sbjct:  630 DPVWRFDDRDVILYNIALGATTK------QLKYVY-ENDSDF-QVIPTFGHLITFNSGKSQNSFAKLLRNFNPMLLLHGEHYLKVHSWPPPTEGEIKTTFEPIATTPKGTNVVIVHGSKSVDNKSGELIYSNEATYFIRNCQADNKV-----YADRPAFATNQFLAPKRAPDYQVDVPVSEDLAALYRLSGDRNPLHIDP 816          
The following BLAST results are available for this feature:
BLAST of FC872145 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
DHB4_HUMAN1.887e-3240.29Peroxisomal multifunctional enzyme type 2 OS=Homo ... [more]
DHB4_MOUSE4.647e-3138.05Peroxisomal multifunctional enzyme type 2 OS=Mus m... [more]
DHB4_RAT1.035e-3038.35Peroxisomal multifunctional enzyme type 2 OS=Rattu... [more]
FOX2_NEUCR1.352e-3039.80Peroxisomal hydratase-dehydrogenase-epimerase OS=N... [more]
MFEB_DICDI6.726e-2230.99Probable 3-alpha,7-alpha,12-alpha-trihydroxy-5-bet... [more]
FOX2_YEAST4.512e-1833.98Peroxisomal hydratase-dehydrogenase-epimerase OS=S... [more]
FOX2_CANTR2.317e-1430.50Peroxisomal hydratase-dehydrogenase-epimerase OS=C... [more]
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Properties
Property NameValue
Genbank descriptionC05701B07SK AbsCOv1 Citrus clementina cDNA clone C05701B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872145 ID=FC872145; Name=FC872145; organism=Citrus clementina; type=EST; length=732bp
ATTCGGCCGGGTTAGTGAATTCACTTTTGAAAACGCTTTTGAGCAGAAAT
TGAAAAGCTACTTTCAATCTTAAGAGGGGCTTCCATGGCGAAAAGTTCAG
GTATCAATCCAGAGCTCCTCCTCTCTCAAAAACTCCCCGAGAAGACATTC
ACTTACACTGAAAGAGATGCTGCGATCTATGCCTTGGGTGTTGGAGCGTG
TGGACGGGATGCTGTGGATGCTGATGAGCTCAAATATGTGTATCATGAAA
ATGGGCAGCAGTTCATCCAGGTCTTGCCCACATTTTCTGCTTTGTTTTCA
TTTGAATTGGAGCCAAGTGGTGCCATAGATCTTCCAGGACTGCAACATGA
TCCACGACTTTTGCTGCATGGACAACAATACATGGAACTGTATAAGCCAT
TTCCTTCTAGCGCTTCTATACGAAATGAAGCATGTATTGCCGGATTGCAT
GATAAGGGTAAAGCTGCTATCCTTGAGATTGAAACCAAAAGTTACAATGC
AGAATCTGGTGAACTGTTATGCATGAATCGGATGACTGCCTTTCTGCGGG
GTGCTGGCGGCTTTTCAAATTCATCTCAACCATTTTCCTACTCAAAATAT
CAAACTATCCCTGTTTCAGTTGTGAAAATCCCTAAAAGTCAACCTTTTGC
AGTATTTGAGGATTATACCCAACCATCTCAGGCATTGGTGTATAGGCTAT
CTGGTGATTATAATCCTCTTCATTCAGATCCT
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