FC872146

Overview
NameFC872146
Unique NameFC872146
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length420
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872146 vs. ExPASy Swiss-Prot
Match: GSTU6_ORYSJ (Probable glutathione S-transferase GSTU6 OS=Oryza sativa subsp. japonica GN=GSTU6 PE=2 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 4.473e-24
Identity = 53/108 (49.07%), Postives = 73/108 (67.59%), Query Frame = 1
Query:   37 VKVLGAGPTPFGMGAKIPLKTKSGEYDFLEENLGPKSELLLKSNPVHKKIPVLIHKDNPVGKSPIIAKNGDEVGPSSG---PPILPSDPYDRAVARFGAPYVDKNLSP 351
            +K+LG   +P+ +  ++ L  KS  Y+++EENLG KS+LLL SNPVHK +PVL+H   PV +S +I +  DEV P      P ++PSDPY+RAVARF A YVD  + P
Sbjct:    7 LKLLGVWSSPYAIRVRVVLNLKSLPYEYVEENLGDKSDLLLASNPVHKSVPVLLHAGRPVNESQVIVQYIDEVWPGGAGGRPSVMPSDPYERAVARFWAAYVDDKVRP 114          
BLAST of FC872146 vs. ExPASy Swiss-Prot
Match: GSTX6_SOYBN (Probable glutathione S-transferase OS=Glycine max GN=HSP26-A PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.460e-23
Identity = 56/128 (43.75%), Postives = 79/128 (61.72%), Query Frame = 1
Query:   37 VKVLGAGPTPFGMGAKIPLKTKSGEYDFLEENLGPKSELLLKSNPVHKKIPVLIHKDNPVGKSPIIAKNGDEVGPSSGPPILPSDPYDRAVARFGAPYVDKNLSPPLKSFGRANGAKPKEPAIDQLIE 420
            VK+LG   +PF    +I LK K  EY FLEENLG KS+LLLK NPVHKK+PV +H + P+ +S +I +  DE   ++  PILPSDPY RA+ARF + ++D  +   +         K +E  +++  E
Sbjct:    8 VKLLGIVGSPFVCRVQIALKLKGVEYKFLEENLGNKSDLLLKYNPVHKKVPVFVHNEQPIAESLVIVEYIDETWKNN--PILPSDPYQRALARFWSKFIDDKIVGAVSKSVFTVDEKEREKNVEETYE 133          
BLAST of FC872146 vs. ExPASy Swiss-Prot
Match: GSTXC_TOBAC (Probable glutathione S-transferase parC OS=Nicotiana tabacum GN=PARC PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.328e-22
Identity = 61/136 (44.85%), Postives = 79/136 (58.09%), Query Frame = 1
Query:   22 MAKTPVKVLGAGPTPFGMGAKIPLKTKSGEYDFLEENLGPKSELLLKSNPVHKKIPVLIHKDNPVGKSPIIAKNGDEVGPSSGPPILPSDPYDRAVARFGAPYVDKNLSPPLKSFGR---ANGAKPKEPAIDQLIE 420
            MA   V +L   P+ FGM  +I L  K  +Y++ +E+L  KS LLL+ NP+HKKIPVLIH   P+ +S I  +  +EV     P +LPSDPYDRA ARF A Y+DK     L  FGR   A   + +E A    IE
Sbjct:    1 MANEEVILLDFWPSMFGMRLRIALAEKEIKYEYKQEDLRNKSPLLLQMNPIHKKIPVLIHNGKPICESIIAVEYIEEVWKDKAPSLLPSDPYDRAQARFWADYIDKK----LYDFGRKLWATKGEEQEAAKKDFIE 132          
BLAST of FC872146 vs. ExPASy Swiss-Prot
Match: GSTX4_TOBAC (Probable glutathione S-transferase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.328e-22
Identity = 54/108 (50.00%), Postives = 69/108 (63.89%), Query Frame = 1
Query:   22 MAKTPVKVLGAGPTPFGMGAKIPLKTKSGEYDFLEENLGPKSELLLKSNPVHKKIPVLIHKDNPVGKSPIIAKNGDEVGPSSGPPILPSDPYDRAVARFGAPYVDKNL 345
            MA   V +L   P+ FGM  +I L  K  +Y++ EE+L  KS LLL+ NP+HKKIPVLIH   P+ +S I  +  +EV     P +LPSDPYDRA ARF A Y+DK L
Sbjct:    1 MANEEVILLDFWPSMFGMRLRIALAEKEIKYEYKEEDLRNKSPLLLQMNPIHKKIPVLIHNGKPICESIIAVEYIEEVWKDKAPNLLPSDPYDRAQARFWADYIDKKL 108          
BLAST of FC872146 vs. ExPASy Swiss-Prot
Match: GSTX1_SOLTU (Probable glutathione S-transferase OS=Solanum tuberosum GN=PRP1 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 7.896e-21
Identity = 60/128 (46.88%), Postives = 77/128 (60.16%), Query Frame = 1
Query:   37 VKVLGAGPTPFGMGAKIPLKTKSGEYDFLEENLGPKSELLLKSNPVHKKIPVLIHKDNPVGKSPIIAKNGDEVGPSSGPPILPSDPYDRAVARFGAPYVDKNLSPPLKSF--GRANGAKPKEPAIDQL 414
            VK+LG   +PF    +  LK K  +Y+F+EE+L  KS LLL+SNP+HKKIPVLIH    + +S +I +  DE     GP ILP DPYDRA+ARF A YV+   +   KSF        K KE A + L
Sbjct:    4 VKLLGLRYSPFSHRVEWALKIKGVKYEFIEEDLQNKSPLLLQSNPIHKKIPVLIHNGKCICESMVILEYIDEA--FEGPSILPKDPYDRALARFWAKYVEDKGAAVWKSFFSKGEEQEKAKEEAYEML 129          
BLAST of FC872146 vs. ExPASy Swiss-Prot
Match: GSTX2_TOBAC (Probable glutathione S-transferase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.297e-20
Identity = 53/119 (44.54%), Postives = 75/119 (63.03%), Query Frame = 1
Query:   37 VKVLGAGPTPFGMGAKIPLKTKSGEYDFLEENLGPKSELLLKSNPVHKKIPVLIHKDNPVGKSPIIAKNGDEVGPSSGPPILPSDPYDRAVARFGAPYVDKNLSPPLKSFGRANGAKPK 393
            VK+LG   +PF    +  LK K  +Y+++EE+   KS LLL+SNPV+KK+PVLIH   P+ +S II +  DE     GP ILP DPYDRA+ARF A ++D  ++  + +F R    + K
Sbjct:    4 VKLLGFWYSPFSHRVEWALKIKGVKYEYIEEDRDNKSSLLLQSNPVYKKVPVLIHNGKPIVESMIILEYIDET--FEGPSILPKDPYDRALARFWAKFLDDKVAAVVNTFFRKGEEQEK 120          
BLAST of FC872146 vs. ExPASy Swiss-Prot
Match: GSTX1_TOBAC (Probable glutathione S-transferase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.297e-20
Identity = 52/120 (43.33%), Postives = 75/120 (62.50%), Query Frame = 1
Query:   37 VKVLGAGPTPFGMGAKIPLKTKSGEYDFLEENLGPKSELLLKSNPVHKKIPVLIHKDNPVGKSPIIAKNGDEVGPSSGPPILPSDPYDRAVARFGAPYVDKNLSPPLKSFGRANGAKPKE 396
            VK+LG   +PF    +  LK K  +Y+++EE+   KS LLL+SNP+HKK+PVLIH    + +S +I +  DE     GP ILP DPYDRA+ARF A ++D  +   +K+F R    + K+
Sbjct:    4 VKLLGFWYSPFSRRVEWALKIKGVKYEYIEEDRDNKSSLLLQSNPIHKKVPVLIHNGKRIVESMVILEYIDET--FEGPSILPKDPYDRALARFWAKFLDDKVPAVVKTFLRKGEEQEKD 121          
BLAST of FC872146 vs. ExPASy Swiss-Prot
Match: GSTX3_TOBAC (Probable glutathione S-transferase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.489e-19
Identity = 51/119 (42.86%), Postives = 74/119 (62.18%), Query Frame = 1
Query:   37 VKVLGAGPTPFGMGAKIPLKTKSGEYDFLEENLGPKSELLLKSNPVHKKIPVLIHKDNPVGKSPIIAKNGDEVGPSSGPPILPSDPYDRAVARFGAPYVDKNLSPPLKSFGRANGAKPK 393
            VK+LG   +PF    +  LK K  +Y+++EE+   KS LLL+SNPVHKK+PVLIH   P+ +S +I +  DE     GP ILP DPYDRA+ARF + ++   ++  + +F R    + K
Sbjct:    4 VKLLGFWYSPFTHRVEWALKLKGVKYEYIEEDRDNKSSLLLQSNPVHKKVPVLIHNGKPIVESMVILEYIDET--FEGPSILPKDPYDRALARFWSKFLGDKVAAVVNTFFRKGEEQEK 120          
BLAST of FC872146 vs. ExPASy Swiss-Prot
Match: GSTX3_SOYBN (Glutathione S-transferase 3 OS=Glycine max GN=GST3 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.540e-19
Identity = 51/120 (42.50%), Postives = 72/120 (60.00%), Query Frame = 1
Query:   37 VKVLGAGPTPFGMGAKIPLKTKSGEYDFLEENLGPKSELLLKSNPVHKKIPVLIHKDNPVGKSPIIAKNGDEVGPSSGPPILPSDPYDRAVARFGAPYVDKNLSPPLKSFGRANGAKPKE 396
            V +L    + +GM A+I L  K   Y++ EENL  +S LLL+ NP+HKKIPVLIH   P+ +S II +  DEV  +   P++PSDPY R+ ARF   Y+DK +    K    + G + +E
Sbjct:    5 VVLLDTWASMYGMRARIALAEKGVRYEYKEENLMNRSPLLLQMNPIHKKIPVLIHNGKPICESAIIVQYIDEVW-NDKSPLMPSDPYKRSQARFWVDYIDKKIYDTWKKMWLSKGEEHEE 123          
BLAST of FC872146 vs. ExPASy Swiss-Prot
Match: GSTXA_TOBAC (Probable glutathione S-transferase parA OS=Nicotiana tabacum GN=PARA PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.150e-18
Identity = 51/108 (47.22%), Postives = 66/108 (61.11%), Query Frame = 1
Query:   22 MAKTPVKVLGAGPTPFGMGAKIPLKTKSGEYDFLEENLGPKSELLLKSNPVHKKIPVLIHKDNPVGKSPIIAKNGDEVGPSSGPPILPSDPYDRAVARFGAPYVDKNL 345
            M    V +L   P+ FGM  +I L  K  +Y+  EENL  KS LLL+ NPVHKKIP+LIH    + +S  I +  DEV      P+LPSDPY+R+ ARF A Y+DK +
Sbjct:    1 MESNNVVLLDFWPSSFGMRLRIALALKGIKYEAKEENLSDKSPLLLEMNPVHKKIPILIHNSKAICESLNILEYIDEVWHDK-CPLLPSDPYERSQARFWADYIDKKI 107          
The following BLAST results are available for this feature:
BLAST of FC872146 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
GSTU6_ORYSJ4.473e-2449.07Probable glutathione S-transferase GSTU6 OS=Oryza ... [more]
GSTX6_SOYBN6.460e-2343.75Probable glutathione S-transferase OS=Glycine max ... [more]
GSTXC_TOBAC9.328e-2244.85Probable glutathione S-transferase parC OS=Nicotia... [more]
GSTX4_TOBAC9.328e-2250.00Probable glutathione S-transferase OS=Nicotiana ta... [more]
GSTX1_SOLTU7.896e-2146.88Probable glutathione S-transferase OS=Solanum tube... [more]
GSTX2_TOBAC2.297e-2044.54Probable glutathione S-transferase OS=Nicotiana ta... [more]
GSTX1_TOBAC2.297e-2043.33Probable glutathione S-transferase OS=Nicotiana ta... [more]
GSTX3_TOBAC1.489e-1942.86Probable glutathione S-transferase OS=Nicotiana ta... [more]
GSTX3_SOYBN2.540e-1942.50Glutathione S-transferase 3 OS=Glycine max GN=GST3... [more]
GSTXA_TOBAC2.150e-1847.22Probable glutathione S-transferase parA OS=Nicotia... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05701B08SK AbsCOv1 Citrus clementina cDNA clone C05701B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872146 ID=FC872146; Name=FC872146; organism=Citrus clementina; type=EST; length=420bp
GAGAAAAAAAAAAAAAAAAAAATGGCAAAAACCCCCGTGAAGGTTTTGGG
GGCGGGCCCAACCCCTTTTGGGATGGGGGCAAAAATCCCCCTTAAAACCA
AGTCTGGGGAGTATGATTTTCTGGAGGAAAATTTGGGACCCAAAAGCGAG
CTTCTGCTTAAATCAAACCCTGTTCACAAAAAAATCCCAGTTCTGATTCA
CAAGGATAACCCGGTTGGCAAATCCCCCATCATTGCCAAGAACGGGGATG
AGGTTGGGCCCTCTTCAGGCCCCCCTATTCTTCCTTCGGACCCTTATGAC
CGGGCCGTTGCCCGTTTCGGGGCCCCTTATGTTGATAAAAATTTGTCCCC
CCCCTTGAAAAGCTTTGGTAGGGCAAATGGAGCGAAACCTAAGGAACCTG
CAATTGACCAATTGATTGAA
back to top