FC872147

Overview
NameFC872147
Unique NameFC872147
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length658
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig318 contig Ccv1_Contig318:117..774. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: FDH_SOLTU (Formate dehydrogenase, mitochondrial OS=Solanum tuberosum GN=FDH1 PE=1 SV=2)

HSP 1 Score: 303.523 bits (776), Expect = 6.186e-82
Identity = 141/161 (87.58%), Postives = 152/161 (94.41%), Query Frame = 1
Query:    1 LYHDRVKMDPQLEKETGAEFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAPQYR 483
            LYHDR+KMD +LE + GA+FEEDLD ML KCDIVV+NTPLTEKT+GMFDK+RIAK+KKGVLIVNNARGAIMDTQAVVDAC+SGHIAGYSGDVW PQPAPKDHPWRYMPNQAMTPH+SGTTIDAQLRYAAG KDMLDRYFKGEDFP +NYIVK GELAPQYR
Sbjct:  221 LYHDRLKMDSELENQIGAKFEEDLDKMLSKCDIVVINTPLTEKTKGMFDKERIAKLKKGVLIVNNARGAIMDTQAVVDACNSGHIAGYSGDVWYPQPAPKDHPWRYMPNQAMTPHISGTTIDAQLRYAAGTKDMLDRYFKGEDFPAENYIVKDGELAPQYR 381          
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: FDH1_ORYSJ (Formate dehydrogenase 1, mitochondrial OS=Oryza sativa subsp. japonica GN=Os06g0486800 PE=1 SV=2)

HSP 1 Score: 300.442 bits (768), Expect = 5.236e-81
Identity = 137/161 (85.09%), Postives = 152/161 (94.41%), Query Frame = 1
Query:    1 LYHDRVKMDPQLEKETGAEFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAPQYR 483
            LYHDR+K+DP+LEKE GA++EEDLD MLPKCD++V+NTPLTEKTRGMF+K+RIAKMKKGV+IVNNARGAIMDTQAV DACSSG +AGY GDVW PQPAPKDHPWRYMPN AMTPH+SGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVK G+LA QY+
Sbjct:  216 LYHDRLKIDPELEKEIGAKYEEDLDAMLPKCDVIVINTPLTEKTRGMFNKERIAKMKKGVIIVNNARGAIMDTQAVADACSSGQVAGYGGDVWFPQPAPKDHPWRYMPNHAMTPHISGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKEGQLASQYQ 376          
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: FDH_HORVU (Formate dehydrogenase, mitochondrial OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 299.671 bits (766), Expect = 8.932e-81
Identity = 137/161 (85.09%), Postives = 153/161 (95.03%), Query Frame = 1
Query:    1 LYHDRVKMDPQLEKETGAEFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAPQYR 483
            LYHDR++++P+LEKE GA+FEEDLD MLPKCD+VV+NTPLTEKTRGMF+K++IAKMKKGV+IVNNARGAIMDTQAV DACSSGHIAGY GDVW PQPAPKDHPWRYMPN AMTPH+SGTTIDAQLRYAAGVKDMLDRYFKGE+FPV+NYIVK GELA QY+
Sbjct:  217 LYHDRLQINPELEKEIGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKEKIAKMKKGVIIVNNARGAIMDTQAVADACSSGHIAGYGGDVWFPQPAPKDHPWRYMPNHAMTPHISGTTIDAQLRYAAGVKDMLDRYFKGEEFPVENYIVKEGELASQYK 377          
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: FDH2_ORYSJ (Formate dehydrogenase 2, mitochondrial OS=Oryza sativa subsp. japonica GN=Os06g0486900 PE=2 SV=1)

HSP 1 Score: 296.975 bits (759), Expect = 5.790e-80
Identity = 136/161 (84.47%), Postives = 149/161 (92.55%), Query Frame = 1
Query:    1 LYHDRVKMDPQLEKETGAEFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAPQYR 483
            +YHDRVK+DP+LEKE GA++EEDLD MLPKCD+VV+N PLTEKTRGMF+K+RIAKMKKGV IVNNARGAIMDTQAV DAC+SGH+AGY GDVW PQPAPKDHPWRYMPN AMTPH SGTTID QLRYAAGVKDMLDRYFKGEDFP QNYIVKAG+LA QY+
Sbjct:  218 MYHDRVKIDPELEKEIGAKYEEDLDAMLPKCDVVVINMPLTEKTRGMFNKERIAKMKKGVTIVNNARGAIMDTQAVADACASGHVAGYGGDVWFPQPAPKDHPWRYMPNHAMTPHCSGTTIDGQLRYAAGVKDMLDRYFKGEDFPAQNYIVKAGQLASQYQ 378          
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: FDH_ARATH (Formate dehydrogenase, mitochondrial OS=Arabidopsis thaliana GN=FDH1 PE=1 SV=1)

HSP 1 Score: 286.574 bits (732), Expect = 7.825e-77
Identity = 132/161 (81.99%), Postives = 147/161 (91.30%), Query Frame = 1
Query:    1 LYHDRVKMDPQLEKETGAEFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAPQYR 483
            LYHDR++M P+LEKETGA+F EDL+ MLPKCD++V+N PLTEKTRGMF+K+ I K+KKGVLIVNNARGAIM+ QAVVDA  SGHI GYSGDVW+PQPAPKDHPWRYMPNQAMTPH SGTTIDAQLRYAAG KDML+RYFKGEDFP +NYIVK GELAPQYR
Sbjct:  224 LYHDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSGTTIDAQLRYAAGTKDMLERYFKGEDFPTENYIVKDGELAPQYR 384          
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: FDH_NEUCR (Formate dehydrogenase OS=Neurospora crassa GN=fdh PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 3.796e-39
Identity = 80/163 (49.08%), Postives = 109/163 (66.87%), Query Frame = 1
Query:    1 LYHDRVKMDPQLEKETGAEFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPN-----QAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE-DFPVQNYIVKAGELA 471
            LY+D   +  + E E G     DL+ ML +CD+V +N PL EKT+G+F+K+ I+KMKKG  +VN ARGAI+  + V +A  SGH+ GY GDVW PQPAP+DHP RY  N      AM PH+SGT++DAQ RYAAG K +++ Y  G+ D+  ++ IV  G+ A
Sbjct:  193 LYYDYQPLSAEKEAEIGCRRVADLEEMLAQCDVVTINCPLHEKTQGLFNKELISKMKKGSWLVNTARGAIVVKEDVAEALKSGHLRGYGGDVWFPQPAPQDHPLRYAKNPFGGGNAMVPHMSGTSLDAQKRYAAGTKAIIESYLSGKHDYRPEDLIVYGGDYA 355          
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: FDH_EMENI (Probable formate dehydrogenase OS=Emericella nidulans GN=aciA PE=2 SV=2)

HSP 1 Score: 159.073 bits (401), Expect = 1.884e-38
Identity = 84/180 (46.67%), Postives = 112/180 (62.22%), Query Frame = 1
Query:    1 LYHDRVKMDPQLEKETGAEFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMK-----------------KGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPN-----QAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE-DFPVQNYIVKAGELA 471
            LY+D   + P++EKE GA   + L+ M+ +CD+V +N PL EKTRG+F+K+ I+KMK                 KG  +VN ARGAI+  + V +A  SGH+ GY GDVW PQPAPK+HP RY  +      A  PH+SGT+IDAQ+RYA G K +LD YF G  D+  Q+ IV  G+ A
Sbjct:  188 LYYDYQPLRPEVEKEIGARRVDSLEEMVSQCDVVTINCPLHEKTRGLFNKELISKMKPGKSALLYLIIPMLMYHKGSWLVNTARGAIVVKEDVAEALKSGHLRGYGGDVWFPQPAPKEHPLRYAEHPWGGGNATVPHMSGTSIDAQIRYANGTKAILDSYFSGRFDYQPQDLIVHGGDYA 367          
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: FDH_PSESR (Formate dehydrogenase OS=Pseudomonas sp. (strain 101) PE=1 SV=3)

HSP 1 Score: 155.221 bits (391), Expect = 2.721e-37
Identity = 73/156 (46.79%), Postives = 98/156 (62.82%), Query Frame = 1
Query:    4 YHDRVKMDPQLEKETGAEFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELA 471
            Y DR ++   +EKE    +    + M P CD+V +N PL  +T  M + + +   K+G  IVN ARG + D  AV  A  SG +AGY+GDVW PQPAPKDHPWR MP   MTPH+SGTT+ AQ RYAAG +++L+ +F+G     +  IV+ G LA
Sbjct:  220 YTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISGTTLTAQARYAAGTREILECFFEGRPIRDEYLIVQGGALA 375          
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: FDH1_YEAST (Formate dehydrogenase 1 OS=Saccharomyces cerevisiae GN=FDH1 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.066e-33
Identity = 72/142 (50.70%), Postives = 97/142 (68.31%), Query Frame = 1
Query:   64 EDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQ-----AMTPHVSGTTIDAQLRYAAGVKDMLDRYF-KGEDFPVQNYIVKAGELA 471
            E L+ M+ + D+V +N PL + +RG+F+K  I+ MK G  +VN ARGAI   + V +A  SG +AGY GDVW+ QPAPKDHPWR M N+     AMT H+SGT++DAQ RYA GVK++L+ YF K  D+  Q+ IV+ G  A
Sbjct:  227 EKLEDMVAQSDVVTINCPLHKDSRGLFNKKLISHMKDGAYLVNTARGAICVAEDVAEAVKSGKLAGYGGDVWDKQPAPKDHPWRTMDNKDHVGNAMTVHISGTSLDAQKRYAQGVKNILNSYFSKKFDYRPQDIIVQNGSYA 368          
BLAST of FC872147 vs. ExPASy Swiss-Prot
Match: FDH2_YEAST (Formate dehydrogenase 2 OS=Saccharomyces cerevisiae GN=FDH2 PE=2 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 2.635e-32
Identity = 71/142 (50.00%), Postives = 96/142 (67.61%), Query Frame = 1
Query:   64 EDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQ-----AMTPHVSGTTIDAQLRYAAGVKDMLDRYF-KGEDFPVQNYIVKAGELA 471
            E L+ M+ + D+V +N PL + +RG+F+K  I+ MK G  +VN ARGAI   + V +A  SG +AGY GDVW+ QPAPKDHPWR M N+     AMT H+SGT++ AQ RYA GVK++L+ YF K  D+  Q+ IV+ G  A
Sbjct:  227 EKLEDMVAQSDVVTINCPLHKDSRGLFNKKLISHMKDGAYLVNTARGAICVAEDVAEAVKSGKLAGYGGDVWDKQPAPKDHPWRTMDNKDHVGNAMTVHISGTSLHAQKRYAQGVKNILNSYFSKKFDYRPQDIIVQNGSYA 368          
The following BLAST results are available for this feature:
BLAST of FC872147 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121
Match NameE-valueIdentityDescription
FDH_SOLTU6.186e-8287.58Formate dehydrogenase, mitochondrial OS=Solanum tu... [more]
FDH1_ORYSJ5.236e-8185.09Formate dehydrogenase 1, mitochondrial OS=Oryza sa... [more]
FDH_HORVU8.932e-8185.09Formate dehydrogenase, mitochondrial OS=Hordeum vu... [more]
FDH2_ORYSJ5.790e-8084.47Formate dehydrogenase 2, mitochondrial OS=Oryza sa... [more]
FDH_ARATH7.825e-7781.99Formate dehydrogenase, mitochondrial OS=Arabidopsi... [more]
FDH_NEUCR3.796e-3949.08Formate dehydrogenase OS=Neurospora crassa GN=fdh ... [more]
FDH_EMENI1.884e-3846.67Probable formate dehydrogenase OS=Emericella nidul... [more]
FDH_PSESR2.721e-3746.79Formate dehydrogenase OS=Pseudomonas sp. (strain 1... [more]
FDH1_YEAST4.066e-3350.70Formate dehydrogenase 1 OS=Saccharomyces cerevisia... [more]
FDH2_YEAST2.635e-3250.00Formate dehydrogenase 2 OS=Saccharomyces cerevisia... [more]

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Properties
Property NameValue
Genbank descriptionC05701B10SK AbsCOv1 Citrus clementina cDNA clone C05701B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872147 ID=FC872147; Name=FC872147; organism=Citrus clementina; type=EST; length=658bp
CTTTATCATGACCGGGTGAAGATGGATCCTCAATTGGAGAAAGAGACTGG
AGCAGAATTTGAGGAGGATCTAGATACTATGCTTCCCAAATGTGACATAG
TTGTTGTCAACACCCCTCTAACAGAAAAGACGAGAGGGATGTTTGACAAA
GATAGGATTGCAAAGATGAAGAAGGGCGTCTTGATTGTCAACAATGCTCG
AGGAGCAATCATGGACACACAAGCTGTTGTTGACGCTTGCTCTAGTGGAC
ACATTGCAGGTTATAGTGGTGATGTTTGGAATCCACAACCAGCTCCAAAG
GACCATCCCTGGCGTTACATGCCAAATCAGGCAATGACCCCTCATGTTTC
TGGGACCACTATTGATGCACAGCTACGCTATGCTGCGGGAGTCAAGGATA
TGCTTGACAGATACTTCAAGGGAGAAGATTTTCCTGTTCAAAATTACATA
GTGAAGGCGGGGGAGCTGGCACCTCAATATCGATAATTTCACGTGTGAAG
AGACTGATCGTTTGAGTTTATTCTCTGTTGAACAGGACCTTCTGGAATAA
TGTTCCTATGTTTGTACCTTCTGGCTTCTGGAATAATGTTCCTATGTTTG
TAAACTCTACATTTAACAATGGAATAATAAACACCTGGCATGAGTAACTT
CATTTTAT
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