FC872148

Overview
NameFC872148
Unique NameFC872148
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length456
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC872148 vs. ExPASy Swiss-Prot
Match: Y1341_ORYSJ (B3 domain-containing protein Os01g0234100 OS=Oryza sativa subsp. japonica GN=Os01g0234100 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 8.579e-12
Identity = 35/118 (29.66%), Postives = 61/118 (51.69%), Query Frame = 3 
Query:   18 IPEAIKACNLSTS-RADYEIWDKTLKGFELLGMNVGFLRAPLNRLMNLAFESEESEVSKRLREVSAEQARAXXXXXXXXXXXXXXXXTMGRLDSEVESLKVKAEKHELKFQEEANAPW 368
            I E I+AC   TS + D+ IW KTL+ F+LLGMNV FL   ++ ++ L  +  +     +  E+  E++RA                 + ++D+E+E ++     H++  ++ A APW
Sbjct:  378 IAEGIRACGAGTSSQEDFLIWKKTLQSFDLLGMNVAFLLKRVDDILGLPEQPRDPSECSKYNELKLERSRAGEKVKALESMMLTVKDVLKKIDAEMEEMESSVRNHDIALRKIATAPW 495
The following BLAST results are available for this feature:
BLAST of FC872148 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y1341_ORYSJ8.579e-1229.66B3 domain-containing protein Os01g0234100 OS=Oryza... [more]
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Properties
Property NameValue
Genbank descriptionC05701B11SK AbsCOv1 Citrus clementina cDNA clone C05701B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872148 ID=FC872148; Name=FC872148; organism=Citrus clementina; type=EST; length=456bp
CACTTCTATTGTCAACTATCCCAGAGGCCATTAAAGCTTGCAACCTTTCC
ACCTCTCGAGCTGATTATGAGATTTGGGACAAAACTTTGAAGGGATTTGA
GCTGTTGGGAATGAATGTTGGATTCTTACGTGCTCCATTAAACAGGTTGA
TGAATCTTGCTTTCGAATCAGAGGAGTCGGAGGTATCAAAAAGGCTTAGA
GAAGTGAGTGCAGAGCAAGCTCGTGCAGAAGAGGAGATGAGAAGTCTTGA
ATTGAAACTCTTGAGATTGAAAGAGACAATGGGAAGGCTTGACTCCGAGG
TAGAGTCACTGAAGGTAAAAGCTGAGAAGCATGAGCTTAAGTTTCAGGAG
GAGGCTAATGCTCCTTGGTGACTGGATACTTTGTGTTTAACAATGACTGT
TGTTTGTTAGGATAAGGAAATATTTCTCATAATATATTATTGCTGTTGTT
GTTTCT
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