FC872152

Overview
NameFC872152
Unique NameFC872152
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length414
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9909 contig Ccv1_Contig9909:1043..1456. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK_BRARP (S-adenosylmethionine synthetase OS=Brassica rapa subsp. pekinensis GN=SAMS PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 2.237e-39
Identity = 74/79 (93.67%), Postives = 76/79 (96.20%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 239
            PLS FVD+YGTG IPDKEILKIV ESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKW+KPQA
Sbjct:  315 PLSVFVDTYGTGLIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWDKPQA 393          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK5_BRAJU (S-adenosylmethionine synthetase 5 OS=Brassica juncea GN=MSAMS5 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 2.237e-39
Identity = 74/79 (93.67%), Postives = 76/79 (96.20%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 239
            PLS FVD+YGTG IPDKEILKIV ESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKW+KPQA
Sbjct:  315 PLSVFVDTYGTGLIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWDKPQA 393          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK3_BRAJU (S-adenosylmethionine synthetase 3 OS=Brassica juncea GN=MSAMS3 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 2.237e-39
Identity = 74/79 (93.67%), Postives = 76/79 (96.20%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 239
            PLS FVD+YGTG IPDKEILKIV ESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKW+KPQA
Sbjct:  315 PLSVFVDTYGTGLIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWDKPQA 393          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK1_SOLTU (S-adenosylmethionine synthetase 1 OS=Solanum tuberosum GN=METK1 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 2.921e-39
Identity = 73/78 (93.59%), Postives = 76/78 (97.44%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQ 236
            PLS FVD+YGTGKIPDKEILKIV E+FDFRPGMM+INLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQ
Sbjct:  315 PLSVFVDTYGTGKIPDKEILKIVKENFDFRPGMMSINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQ 392          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK1_BRAJU (S-adenosylmethionine synthetase 1 OS=Brassica juncea GN=SAMS1 PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 6.508e-39
Identity = 73/79 (92.41%), Postives = 75/79 (94.94%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 239
            P S FVD+YGTG IPDKEILKIV ESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKW+KPQA
Sbjct:  315 PFSVFVDTYGTGLIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWDKPQA 393          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK2_ELAUM (S-adenosylmethionine synthetase 2 OS=Elaeagnus umbellata GN=SAMS2 PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 8.499e-39
Identity = 72/79 (91.14%), Postives = 76/79 (96.20%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 239
            PLS FVDSYGTGKIPDKEILKIV E+FDFRPGM+TINLDLKRGGN RFLKTAAYGHFGRDDPDFTWE+VKPLKWEKPQ+
Sbjct:  315 PLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMITINLDLKRGGNDRFLKTAAYGHFGRDDPDFTWEIVKPLKWEKPQS 393          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK_MEDTR (S-adenosylmethionine synthetase OS=Medicago truncatula GN=METK PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 1.450e-38
Identity = 72/79 (91.14%), Postives = 76/79 (96.20%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 239
            PLS FVDSYGTGKIPD+EIL+IV E+FDFRPGM+TINLDLKRGGN RFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA
Sbjct:  316 PLSVFVDSYGTGKIPDREILQIVKENFDFRPGMITINLDLKRGGNSRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 394          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK1_ARATH (S-adenosylmethionine synthetase 1 OS=Arabidopsis thaliana GN=SAM1 PE=1 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 1.893e-38
Identity = 73/79 (92.41%), Postives = 75/79 (94.94%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 239
            PLS FVD+Y TG IPDKEILKIV ESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKW+KPQA
Sbjct:  315 PLSVFVDTYETGLIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWDKPQA 393          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK2_ARATH (S-adenosylmethionine synthetase 2 OS=Arabidopsis thaliana GN=SAM2 PE=1 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 2.473e-38
Identity = 72/79 (91.14%), Postives = 75/79 (94.94%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 239
            PLS FVD+YGTG IPDKEILKIV E+FDFRPGMMTINLDLKRGGNGRF KTAAYGHFGRDDPDFTWEVVKPLKW+KPQA
Sbjct:  315 PLSVFVDTYGTGLIPDKEILKIVKETFDFRPGMMTINLDLKRGGNGRFQKTAAYGHFGRDDPDFTWEVVKPLKWDKPQA 393          
BLAST of FC872152 vs. ExPASy Swiss-Prot
Match: METK1_POPTR (S-adenosylmethionine synthetase 1 OS=Populus trichocarpa GN=METK1 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 4.218e-38
Identity = 74/79 (93.67%), Postives = 76/79 (96.20%), Query Frame = 3
Query:    3 PLSFFVDSYGTGKIPDKEILKIVNESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 239
            PLS FVD+YGTGKIPDKEILKIV E+FDFRPGMMTINLDLKRGGN RFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA
Sbjct:  315 PLSVFVDTYGTGKIPDKEILKIVKENFDFRPGMMTINLDLKRGGN-RFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 392          
The following BLAST results are available for this feature:
BLAST of FC872152 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 233
Match NameE-valueIdentityDescription
METK_BRARP2.237e-3993.67S-adenosylmethionine synthetase OS=Brassica rapa s... [more]
METK5_BRAJU2.237e-3993.67S-adenosylmethionine synthetase 5 OS=Brassica junc... [more]
METK3_BRAJU2.237e-3993.67S-adenosylmethionine synthetase 3 OS=Brassica junc... [more]
METK1_SOLTU2.921e-3993.59S-adenosylmethionine synthetase 1 OS=Solanum tuber... [more]
METK1_BRAJU6.508e-3992.41S-adenosylmethionine synthetase 1 OS=Brassica junc... [more]
METK2_ELAUM8.499e-3991.14S-adenosylmethionine synthetase 2 OS=Elaeagnus umb... [more]
METK_MEDTR1.450e-3891.14S-adenosylmethionine synthetase OS=Medicago trunca... [more]
METK1_ARATH1.893e-3892.41S-adenosylmethionine synthetase 1 OS=Arabidopsis t... [more]
METK2_ARATH2.473e-3891.14S-adenosylmethionine synthetase 2 OS=Arabidopsis t... [more]
METK1_POPTR4.218e-3893.67S-adenosylmethionine synthetase 1 OS=Populus trich... [more]

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Properties
Property NameValue
Genbank descriptionC05701C03SK AbsCOv1 Citrus clementina cDNA clone C05701C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872152 ID=FC872152; Name=FC872152; organism=Citrus clementina; type=EST; length=414bp
AGCCATTGTCCTTCTTTGTGGACTCATATGGAACCGGCAAGATTCCTGAC
AAGGAGATCCTCAAAATTGTTAACGAAAGCTTTGATTTCAGGCCAGGAAT
GATGACCATCAATTTGGATCTCAAAAGGGGCGGTAATGGCAGGTTCTTGA
AGACTGCTGCCTATGGACACTTTGGCAGGGATGACCCAGACTTCACTTGG
GAAGTTGTGAAGCCCCTCAAGTGGGAAAAGCCTCAAGCTTAAATTTGAGT
TGAAAAGTGAAAACTATCCCTGCTGTTCAAGTTTGCTTCTATTGGTAGTG
GATGAATAATTTGAATATTATCTTGCTGCTGCTTTGTAATACTAAGCAAA
TCTCCTGTGTTCAGAACTCATACATGTTCCCCATCCGAAAAAAAAAAAAA
AAAAAAAAAAAAAA
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