FC872154
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC872154 vs. ExPASy Swiss-Prot
Match: TMEDA_RABIT (Transmembrane emp24 domain-containing protein 10 OS=Oryctolagus cuniculus GN=TMED10 PE=1 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 8.920e-20 Identity = 51/153 (33.33%), Postives = 89/153 (58.17%), Query Frame = 1 Query: 7 GARIHKLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLREREEEMQELNRVTNSRMAWFSGFSLFICIAVAGMQLWHLKTFFEKKKLI 465 G R H +++T + G+ + + G+FAFT + + CF + + D + GV+AK++ +AK + +E+EL++L D SI + Y+++REEEM++ N TN+R+ +FS FS+F I +A Q+++L+ FF+ KKLI Sbjct: 69 GLRTH---LKITDSAGHILYSKEDASKGKFAFTTEDYDMFEVCFESKGTGRIPDQLVILDMKHGVEAKNYEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKREEEMRDTNESTNTRVLYFSIFSMFCLIGLATWQVFYLRRFFKAKKLI 218
BLAST of FC872154 vs. ExPASy Swiss-Prot
Match: TMEDA_RAT (Transmembrane emp24 domain-containing protein 10 OS=Rattus norvegicus GN=Tmed10 PE=1 SV=2) HSP 1 Score: 95.9005 bits (237), Expect = 1.165e-19 Identity = 51/153 (33.33%), Postives = 89/153 (58.17%), Query Frame = 1 Query: 7 GARIHKLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLREREEEMQELNRVTNSRMAWFSGFSLFICIAVAGMQLWHLKTFFEKKKLI 465 G R H +++T + G+ + + G+FAFT + + CF + + D + GV+AK++ +AK + +E+EL++L D SI + Y+++REEEM++ N TN+R+ +FS FS+F I +A Q+++L+ FF+ KKLI Sbjct: 69 GLRTH---LKITDSAGHILYAKEDATKGKFAFTTEDYDMFEVCFESKGTGRIPDQLVILDMKHGVEAKNYEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKREEEMRDTNESTNTRVLYFSIFSMFCLIGLATWQVFYLRRFFKAKKLI 218
BLAST of FC872154 vs. ExPASy Swiss-Prot
Match: TMEDA_MOUSE (Transmembrane emp24 domain-containing protein 10 OS=Mus musculus GN=Tmed10 PE=2 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 1.165e-19 Identity = 51/153 (33.33%), Postives = 89/153 (58.17%), Query Frame = 1 Query: 7 GARIHKLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLREREEEMQELNRVTNSRMAWFSGFSLFICIAVAGMQLWHLKTFFEKKKLI 465 G R H +++T + G+ + + G+FAFT + + CF + + D + GV+AK++ +AK + +E+EL++L D SI + Y+++REEEM++ N TN+R+ +FS FS+F I +A Q+++L+ FF+ KKLI Sbjct: 69 GLRTH---LKITDSAGHILYAKEDATKGKFAFTTEDYDMFEVCFESKGTGRIPDQLVILDMKHGVEAKNYEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKREEEMRDTNESTNTRVLYFSIFSMFCLIGLATWQVFYLRRFFKAKKLI 218
BLAST of FC872154 vs. ExPASy Swiss-Prot
Match: TMEDA_BOVIN (Transmembrane emp24 domain-containing protein 10 OS=Bos taurus GN=TMED10 PE=2 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 1.165e-19 Identity = 51/153 (33.33%), Postives = 89/153 (58.17%), Query Frame = 1 Query: 7 GARIHKLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLREREEEMQELNRVTNSRMAWFSGFSLFICIAVAGMQLWHLKTFFEKKKLI 465 G R H +++T + G+ + + G+FAFT + + CF + + D + GV+AK++ +AK + +E+EL++L D SI + Y+++REEEM++ N TN+R+ +FS FS+F I +A Q+++L+ FF+ KKLI Sbjct: 69 GLRTH---LKITDSAGHILYSKEDATKGKFAFTTEDYDMFEVCFESKGTGRIPDQLVILDMKHGVEAKNYEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKREEEMRDTNESTNTRVLYFSIFSMFCLIGLATWQVFYLRRFFKAKKLI 218
BLAST of FC872154 vs. ExPASy Swiss-Prot
Match: TMEDA_HUMAN (Transmembrane emp24 domain-containing protein 10 OS=Homo sapiens GN=TMED10 PE=1 SV=2) HSP 1 Score: 95.5153 bits (236), Expect = 1.521e-19 Identity = 51/153 (33.33%), Postives = 89/153 (58.17%), Query Frame = 1 Query: 7 GARIHKLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLREREEEMQELNRVTNSRMAWFSGFSLFICIAVAGMQLWHLKTFFEKKKLI 465 G R H +++T + G+ + + G+FAFT + + CF + + D + GV+AK++ +AK + +E+EL++L D SI + Y+++REEEM++ N TN+R+ +FS FS+F I +A Q+++L+ FF+ KKLI Sbjct: 69 GLRSH---LKITDSAGHILYSKEDATKGKFAFTTEDYDMFEVCFESKGTGRIPDQLVILDMKHGVEAKNYEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKREEEMRDTNESTNTRVLYFSIFSMFCLIGLATWQVFYLRRFFKAKKLI 218
BLAST of FC872154 vs. ExPASy Swiss-Prot
Match: TMEDA_PONAB (Transmembrane emp24 domain-containing protein 10 OS=Pongo abelii GN=TMED10 PE=2 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 2.595e-19 Identity = 51/153 (33.33%), Postives = 88/153 (57.52%), Query Frame = 1 Query: 7 GARIHKLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLREREEEMQELNRVTNSRMAWFSGFSLFICIAVAGMQLWHLKTFFEKKKLI 465 G R H +++T + G+ + + G+FAFT + + CF + + D + GV+AK++ +AK + +E+EL++L D SI + Y+ +REEEM++ N TN+R+ +FS FS+F I +A Q+++L+ FF+ KKLI Sbjct: 69 GLRSH---LKITDSAGHILYSKEDATKGKFAFTTEDYDMFEVCFESKGTGRIPDQLVILDMKHGVEAKNYEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMEKREEEMRDTNESTNTRVLYFSIFSMFCLIGLATWQVFYLRRFFKAKKLI 218
BLAST of FC872154 vs. ExPASy Swiss-Prot
Match: TMEDA_TAKRU (Transmembrane emp24 domain-containing protein 10 OS=Takifugu rubripes GN=tmed10 PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 3.389e-19 Identity = 47/144 (32.64%), Postives = 86/144 (59.72%), Query Frame = 1 Query: 34 RVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLREREEEMQELNRVTNSRMAWFSGFSLFICIAVAGMQLWHLKTFFEKKKLI 465 ++T + ++ + + G+FAFT + + CF + ++ D + GV+AK++ +AK + +E+EL++L D SI + Y+++REEEM++ N TN+R+ +FS FS+F I +A Q+++L+ FF+ KKLI Sbjct: 69 KITDSSSHTLYSKEDATKGKFAFTTEDYDMFEVCFESKCTGRVPDQLVNLDMKHGVEAKNYEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKREEEMRDTNESTNTRVLYFSIFSMFCLIGLATWQVFYLRRFFKAKKLI 212
BLAST of FC872154 vs. ExPASy Swiss-Prot
Match: TMEDA_MESAU (Transmembrane protein Tmp21 OS=Mesocricetus auratus GN=TMED10 PE=2 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 5.782e-19 Identity = 50/153 (32.68%), Postives = 88/153 (57.52%), Query Frame = 1 Query: 7 GARIHKLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLREREEEMQELNRVTNSRMAWFSGFSLFICIAVAGMQLWHLKTFFEKKKLI 465 G R H +++T + G+ + + G+FAFT + + CF + + D + GV+AK++ +AK + +E+EL++L D SI + Y+++REEEM++ N TN+R+ +FS FS+ I +A Q+++L+ FF+ KKLI Sbjct: 69 GLRTH---LKITDSAGHILYAKEDATKGKFAFTTEDYDMFEVCFESKGTGRIPDQLVILDMKHGVEAKNYEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKREEEMRDTNESTNTRVLYFSIFSMLCLIGLATWQVFYLRRFFKAKKLI 218
BLAST of FC872154 vs. ExPASy Swiss-Prot
Match: ERV25_NEUCR (Endoplasmic reticulum vesicle protein 25 OS=Neurospora crassa GN=erv-25 PE=3 SV=2) HSP 1 Score: 81.2629 bits (199), Expect = 2.969e-15 Identity = 45/153 (29.41%), Postives = 80/153 (52.29%), Query Frame = 1 Query: 25 LTVRVTSAYGNSYHYADRVDSGQ-FAFTAAEAGDYMACFW-----AVDHSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLREREEEMQELNRVTNSRMAWFSGFSLFICIAVAGMQLWHLKTFFEKKKLI 465 + + ++ ++GN Y A + Q FT+ + CF +P+ V +D D G AKDWS + + +E +L+++ + V + EM YLR RE+++++ N TN+R+ WF + F+ IA+ G Q+ +L+ +F K LI Sbjct: 65 VNMHISDSHGNEYGKAKDIAGEQRIVFTSHHDAAFDVCFENYLTAKYVENPRRHVELDID--IGADAKDWSAIQATEKLKPLETDLRRIEELVGEVVNEMDYLRAREQKLRDTNESTNNRVKWFGMATTFLLIALWGWQIMYLRAYFRSKHLI 215
BLAST of FC872154 vs. ExPASy Swiss-Prot
Match: TMED9_MOUSE (Transmembrane emp24 domain-containing protein 9 OS=Mus musculus GN=Tmed9 PE=2 SV=2) HSP 1 Score: 78.5666 bits (192), Expect = 1.925e-14 Identity = 42/134 (31.34%), Postives = 70/134 (52.24%), Query Frame = 1 Query: 88 GQFAFTAAEAGDYMACFWAVDHSPQTTVT--------IDFDWRTGVQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLREREEEMQELNRVTNSRMAWFSGFSLFICIAVAGMQLWHLKTFFEKKKLI 465 G+F FT+ G++ C HS T + + D + G A D++ +A K + ++L +++L + V I +E Y R REE ++ + TN R+ W+S I +A+ Q+ HLK+FFE KKL+ Sbjct: 106 GRFTFTSHTPGEHQICL----HSNSTKFSLFAGGMLRVHLDIQVGEHANDYAEIAAKDKLSELQLRVRQLVEQVEQIQKEQNYQRWREERFRQTSESTNQRVLWWSILQTLILVAIGVWQMRHLKSFFEAKKLV 235 The following BLAST results are available for this feature:
BLAST of FC872154 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 24
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Sequences
The
following sequences are available for this feature:
EST sequence >FC872154 ID=FC872154; Name=FC872154; organism=Citrus clementina; type=EST; length=515bpback to top |