FC872154

Overview
NameFC872154
Unique NameFC872154
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length515
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3954 contig Ccv1_Contig3954:196..710. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872154 vs. ExPASy Swiss-Prot
Match: TMEDA_RABIT (Transmembrane emp24 domain-containing protein 10 OS=Oryctolagus cuniculus GN=TMED10 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 8.920e-20
Identity = 51/153 (33.33%), Postives = 89/153 (58.17%), Query Frame = 1
Query:    7 GARIHKLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLREREEEMQELNRVTNSRMAWFSGFSLFICIAVAGMQLWHLKTFFEKKKLI 465
            G R H   +++T + G+  +  +    G+FAFT  +   +  CF +          +  D + GV+AK++  +AK   +  +E+EL++L D   SI  +  Y+++REEEM++ N  TN+R+ +FS FS+F  I +A  Q+++L+ FF+ KKLI
Sbjct:   69 GLRTH---LKITDSAGHILYSKEDASKGKFAFTTEDYDMFEVCFESKGTGRIPDQLVILDMKHGVEAKNYEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKREEEMRDTNESTNTRVLYFSIFSMFCLIGLATWQVFYLRRFFKAKKLI 218          
BLAST of FC872154 vs. ExPASy Swiss-Prot
Match: TMEDA_RAT (Transmembrane emp24 domain-containing protein 10 OS=Rattus norvegicus GN=Tmed10 PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 1.165e-19
Identity = 51/153 (33.33%), Postives = 89/153 (58.17%), Query Frame = 1
Query:    7 GARIHKLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLREREEEMQELNRVTNSRMAWFSGFSLFICIAVAGMQLWHLKTFFEKKKLI 465
            G R H   +++T + G+  +  +    G+FAFT  +   +  CF +          +  D + GV+AK++  +AK   +  +E+EL++L D   SI  +  Y+++REEEM++ N  TN+R+ +FS FS+F  I +A  Q+++L+ FF+ KKLI
Sbjct:   69 GLRTH---LKITDSAGHILYAKEDATKGKFAFTTEDYDMFEVCFESKGTGRIPDQLVILDMKHGVEAKNYEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKREEEMRDTNESTNTRVLYFSIFSMFCLIGLATWQVFYLRRFFKAKKLI 218          
BLAST of FC872154 vs. ExPASy Swiss-Prot
Match: TMEDA_MOUSE (Transmembrane emp24 domain-containing protein 10 OS=Mus musculus GN=Tmed10 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.165e-19
Identity = 51/153 (33.33%), Postives = 89/153 (58.17%), Query Frame = 1
Query:    7 GARIHKLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLREREEEMQELNRVTNSRMAWFSGFSLFICIAVAGMQLWHLKTFFEKKKLI 465
            G R H   +++T + G+  +  +    G+FAFT  +   +  CF +          +  D + GV+AK++  +AK   +  +E+EL++L D   SI  +  Y+++REEEM++ N  TN+R+ +FS FS+F  I +A  Q+++L+ FF+ KKLI
Sbjct:   69 GLRTH---LKITDSAGHILYAKEDATKGKFAFTTEDYDMFEVCFESKGTGRIPDQLVILDMKHGVEAKNYEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKREEEMRDTNESTNTRVLYFSIFSMFCLIGLATWQVFYLRRFFKAKKLI 218          
BLAST of FC872154 vs. ExPASy Swiss-Prot
Match: TMEDA_BOVIN (Transmembrane emp24 domain-containing protein 10 OS=Bos taurus GN=TMED10 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.165e-19
Identity = 51/153 (33.33%), Postives = 89/153 (58.17%), Query Frame = 1
Query:    7 GARIHKLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLREREEEMQELNRVTNSRMAWFSGFSLFICIAVAGMQLWHLKTFFEKKKLI 465
            G R H   +++T + G+  +  +    G+FAFT  +   +  CF +          +  D + GV+AK++  +AK   +  +E+EL++L D   SI  +  Y+++REEEM++ N  TN+R+ +FS FS+F  I +A  Q+++L+ FF+ KKLI
Sbjct:   69 GLRTH---LKITDSAGHILYSKEDATKGKFAFTTEDYDMFEVCFESKGTGRIPDQLVILDMKHGVEAKNYEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKREEEMRDTNESTNTRVLYFSIFSMFCLIGLATWQVFYLRRFFKAKKLI 218          
BLAST of FC872154 vs. ExPASy Swiss-Prot
Match: TMEDA_HUMAN (Transmembrane emp24 domain-containing protein 10 OS=Homo sapiens GN=TMED10 PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 1.521e-19
Identity = 51/153 (33.33%), Postives = 89/153 (58.17%), Query Frame = 1
Query:    7 GARIHKLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLREREEEMQELNRVTNSRMAWFSGFSLFICIAVAGMQLWHLKTFFEKKKLI 465
            G R H   +++T + G+  +  +    G+FAFT  +   +  CF +          +  D + GV+AK++  +AK   +  +E+EL++L D   SI  +  Y+++REEEM++ N  TN+R+ +FS FS+F  I +A  Q+++L+ FF+ KKLI
Sbjct:   69 GLRSH---LKITDSAGHILYSKEDATKGKFAFTTEDYDMFEVCFESKGTGRIPDQLVILDMKHGVEAKNYEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKREEEMRDTNESTNTRVLYFSIFSMFCLIGLATWQVFYLRRFFKAKKLI 218          
BLAST of FC872154 vs. ExPASy Swiss-Prot
Match: TMEDA_PONAB (Transmembrane emp24 domain-containing protein 10 OS=Pongo abelii GN=TMED10 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.595e-19
Identity = 51/153 (33.33%), Postives = 88/153 (57.52%), Query Frame = 1
Query:    7 GARIHKLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLREREEEMQELNRVTNSRMAWFSGFSLFICIAVAGMQLWHLKTFFEKKKLI 465
            G R H   +++T + G+  +  +    G+FAFT  +   +  CF +          +  D + GV+AK++  +AK   +  +E+EL++L D   SI  +  Y+ +REEEM++ N  TN+R+ +FS FS+F  I +A  Q+++L+ FF+ KKLI
Sbjct:   69 GLRSH---LKITDSAGHILYSKEDATKGKFAFTTEDYDMFEVCFESKGTGRIPDQLVILDMKHGVEAKNYEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMEKREEEMRDTNESTNTRVLYFSIFSMFCLIGLATWQVFYLRRFFKAKKLI 218          
BLAST of FC872154 vs. ExPASy Swiss-Prot
Match: TMEDA_TAKRU (Transmembrane emp24 domain-containing protein 10 OS=Takifugu rubripes GN=tmed10 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.389e-19
Identity = 47/144 (32.64%), Postives = 86/144 (59.72%), Query Frame = 1
Query:   34 RVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLREREEEMQELNRVTNSRMAWFSGFSLFICIAVAGMQLWHLKTFFEKKKLI 465
            ++T +  ++ +  +    G+FAFT  +   +  CF +          ++ D + GV+AK++  +AK   +  +E+EL++L D   SI  +  Y+++REEEM++ N  TN+R+ +FS FS+F  I +A  Q+++L+ FF+ KKLI
Sbjct:   69 KITDSSSHTLYSKEDATKGKFAFTTEDYDMFEVCFESKCTGRVPDQLVNLDMKHGVEAKNYEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKREEEMRDTNESTNTRVLYFSIFSMFCLIGLATWQVFYLRRFFKAKKLI 212          
BLAST of FC872154 vs. ExPASy Swiss-Prot
Match: TMEDA_MESAU (Transmembrane protein Tmp21 OS=Mesocricetus auratus GN=TMED10 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 5.782e-19
Identity = 50/153 (32.68%), Postives = 88/153 (57.52%), Query Frame = 1
Query:    7 GARIHKLTVRVTSAYGNSYHYADRVDSGQFAFTAAEAGDYMACFWAVDHSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLREREEEMQELNRVTNSRMAWFSGFSLFICIAVAGMQLWHLKTFFEKKKLI 465
            G R H   +++T + G+  +  +    G+FAFT  +   +  CF +          +  D + GV+AK++  +AK   +  +E+EL++L D   SI  +  Y+++REEEM++ N  TN+R+ +FS FS+   I +A  Q+++L+ FF+ KKLI
Sbjct:   69 GLRTH---LKITDSAGHILYAKEDATKGKFAFTTEDYDMFEVCFESKGTGRIPDQLVILDMKHGVEAKNYEEIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKREEEMRDTNESTNTRVLYFSIFSMLCLIGLATWQVFYLRRFFKAKKLI 218          
BLAST of FC872154 vs. ExPASy Swiss-Prot
Match: ERV25_NEUCR (Endoplasmic reticulum vesicle protein 25 OS=Neurospora crassa GN=erv-25 PE=3 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 2.969e-15
Identity = 45/153 (29.41%), Postives = 80/153 (52.29%), Query Frame = 1
Query:   25 LTVRVTSAYGNSYHYADRVDSGQ-FAFTAAEAGDYMACFW-----AVDHSPQTTVTIDFDWRTGVQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLREREEEMQELNRVTNSRMAWFSGFSLFICIAVAGMQLWHLKTFFEKKKLI 465
            + + ++ ++GN Y  A  +   Q   FT+     +  CF          +P+  V +D D   G  AKDWS +     +  +E +L+++ + V  +  EM YLR RE+++++ N  TN+R+ WF   + F+ IA+ G Q+ +L+ +F  K LI
Sbjct:   65 VNMHISDSHGNEYGKAKDIAGEQRIVFTSHHDAAFDVCFENYLTAKYVENPRRHVELDID--IGADAKDWSAIQATEKLKPLETDLRRIEELVGEVVNEMDYLRAREQKLRDTNESTNNRVKWFGMATTFLLIALWGWQIMYLRAYFRSKHLI 215          
BLAST of FC872154 vs. ExPASy Swiss-Prot
Match: TMED9_MOUSE (Transmembrane emp24 domain-containing protein 9 OS=Mus musculus GN=Tmed9 PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 1.925e-14
Identity = 42/134 (31.34%), Postives = 70/134 (52.24%), Query Frame = 1
Query:   88 GQFAFTAAEAGDYMACFWAVDHSPQTTVT--------IDFDWRTGVQAKDWSNVAKKGSVDVMELELKKLYDTVSSIHQEMFYLREREEEMQELNRVTNSRMAWFSGFSLFICIAVAGMQLWHLKTFFEKKKLI 465
            G+F FT+   G++  C     HS  T  +        +  D + G  A D++ +A K  +  ++L +++L + V  I +E  Y R REE  ++ +  TN R+ W+S     I +A+   Q+ HLK+FFE KKL+
Sbjct:  106 GRFTFTSHTPGEHQICL----HSNSTKFSLFAGGMLRVHLDIQVGEHANDYAEIAAKDKLSELQLRVRQLVEQVEQIQKEQNYQRWREERFRQTSESTNQRVLWWSILQTLILVAIGVWQMRHLKSFFEAKKLV 235          
The following BLAST results are available for this feature:
BLAST of FC872154 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
TMEDA_RABIT8.920e-2033.33Transmembrane emp24 domain-containing protein 10 O... [more]
TMEDA_RAT1.165e-1933.33Transmembrane emp24 domain-containing protein 10 O... [more]
TMEDA_MOUSE1.165e-1933.33Transmembrane emp24 domain-containing protein 10 O... [more]
TMEDA_BOVIN1.165e-1933.33Transmembrane emp24 domain-containing protein 10 O... [more]
TMEDA_HUMAN1.521e-1933.33Transmembrane emp24 domain-containing protein 10 O... [more]
TMEDA_PONAB2.595e-1933.33Transmembrane emp24 domain-containing protein 10 O... [more]
TMEDA_TAKRU3.389e-1932.64Transmembrane emp24 domain-containing protein 10 O... [more]
TMEDA_MESAU5.782e-1932.68Transmembrane protein Tmp21 OS=Mesocricetus auratu... [more]
ERV25_NEUCR2.969e-1529.41Endoplasmic reticulum vesicle protein 25 OS=Neuros... [more]
TMED9_MOUSE1.925e-1431.34Transmembrane emp24 domain-containing protein 9 OS... [more]

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Properties
Property NameValue
Genbank descriptionC05701C05SK AbsCOv1 Citrus clementina cDNA clone C05701C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872154 ID=FC872154; Name=FC872154; organism=Citrus clementina; type=EST; length=515bp
CGGCCGGGTGCCCGAATCCATAAACTCACCGTCAGGGTGACGTCGGCTTA
CGGTAATAGTTATCATTACGCGGACCGAGTTGACTCGGGCCAGTTTGCGT
TTACGGCTGCCGAGGCTGGCGATTACATGGCTTGTTTTTGGGCCGTTGAT
CATAGCCCGCAAACAACGGTGACGATTGATTTTGATTGGAGGACTGGTGT
GCAAGCTAAGGACTGGTCTAACGTTGCAAAGAAAGGTTCTGTTGACGTCA
TGGAATTAGAGCTGAAGAAGTTGTATGATACTGTTAGTTCTATTCACCAG
GAGATGTTTTATCTCCGTGAAAGAGAAGAAGAAATGCAGGAGCTGAACCG
TGTTACTAACTCCAGAATGGCCTGGTTTAGTGGGTTTTCGCTGTTTATAT
GCATTGCTGTTGCTGGCATGCAACTATGGCACTTGAAAACATTCTTTGAG
AAAAAGAAGCTTATATAAGAGAAGCGTCAATTAAATTAAGCAATTTTCTA
TTTGGTGCTCTTGTA
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