FC872155

Overview
NameFC872155
Unique NameFC872155
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length616
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC872155_ssr498 microsatellite FC872155_ssr498:498..512. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9870 contig Ccv1_Contig9870:1..616. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872155 vs. ExPASy Swiss-Prot
Match: RL24_PRUAV (60S ribosomal protein L24 OS=Prunus avium GN=RPL24 PE=2 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 2.380e-61
Identity = 119/140 (85.00%), Postives = 123/140 (87.86%), Query Frame = 1
Query:   31 MVLKTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIXXXXXXXXXXXXXVTSKSKTQ 450
            MVLKTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWT+MYRKQHKKDIA EAVKK+RR+TKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERI             VT   K+Q
Sbjct:    1 MVLKTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRTTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKDEKKAKKAEVTKSQKSQ 140          
BLAST of FC872155 vs. ExPASy Swiss-Prot
Match: RL24_HORVU (60S ribosomal protein L24 OS=Hordeum vulgare GN=RPL24 PE=2 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 3.217e-58
Identity = 113/140 (80.71%), Postives = 119/140 (85.00%), Query Frame = 1
Query:   31 MVLKTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIXXXXXXXXXXXXXVTSKSKTQ 450
            MVLKTELCRFSG KIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKP+KL WT+MYRKQHKKDI AEA KK+RR+TKKPYSRSIVGATLEVIQK+R EKPEVRDAAREAALREIKERI             VT   K+Q
Sbjct:    1 MVLKTELCRFSGQKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPAKLCWTAMYRKQHKKDIHAEAAKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKDEKKAKKAEVTKSQKSQ 140          
BLAST of FC872155 vs. ExPASy Swiss-Prot
Match: RL24_CICAR (60S ribosomal protein L24 OS=Cicer arietinum GN=RPL24 PE=2 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 4.202e-58
Identity = 112/138 (81.16%), Postives = 120/138 (86.96%), Query Frame = 1
Query:   31 MVLKTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIXXXXXXXXXXXXXVTSKSK 444
            MVLKTELCRFSGAKIYPG+GIRFIR DSQVFLF NSKCKRYFHNRLKPSKLTWT+M+RKQHKKD A EAVKK+RR+TKKPYSRSIVGATLEVIQK+RTEKPEVRDAAREAALREIKERI             V SK++
Sbjct:    1 MVLKTELCRFSGAKIYPGRGIRFIRGDSQVFLFVNSKCKRYFHNRLKPSKLTWTAMFRKQHKKDAAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREIKERIKKTKDEKKAKKAEVASKAQ 138          
BLAST of FC872155 vs. ExPASy Swiss-Prot
Match: RL242_ARATH (60S ribosomal protein L24-2 OS=Arabidopsis thaliana GN=RPL24B PE=2 SV=2)

HSP 1 Score: 218.009 bits (554), Expect = 3.011e-56
Identity = 106/119 (89.08%), Postives = 113/119 (94.96%), Query Frame = 1
Query:   31 MVLKTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERI 387
            MVLKTELCRFSG KIYPG+GIRFIRSDSQVFLF NSKCKRYFHN+LKPSKL WT+MYRKQHKKD A EAVK++RR+TKKPYSRSIVGATLEVIQK+R EKPEVRDAAREAALREIKERI
Sbjct:    1 MVLKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLAWTAMYRKQHKKDAAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERI 119          
BLAST of FC872155 vs. ExPASy Swiss-Prot
Match: RL241_ARATH (60S ribosomal protein L24-1 OS=Arabidopsis thaliana GN=RPL24A PE=1 SV=2)

HSP 1 Score: 217.624 bits (553), Expect = 3.933e-56
Identity = 106/119 (89.08%), Postives = 113/119 (94.96%), Query Frame = 1
Query:   31 MVLKTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERI 387
            MVLKTELCRFSG KIYPG+GIRFIRSDSQVFLF NSKCKRYFHN+LKPSKL WT+MYRKQHKKD A EAVK++RR+TKKPYSRSIVGATLEVIQK+R EKPEVRDAAREAALREIKERI
Sbjct:    1 MVLKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLCWTAMYRKQHKKDAAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERI 119          
BLAST of FC872155 vs. ExPASy Swiss-Prot
Match: RL24B_SCHPO (60S ribosomal protein L24-B OS=Schizosaccharomyces pombe GN=rpl24b PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 8.545e-27
Identity = 57/116 (49.14%), Postives = 82/116 (70.69%), Query Frame = 1
Query:   37 LKTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKER 384
            +K E+C FSG+K+YPG G  F+R D++VF F N K +  F  R  P +L+WT +YR+ HKK I+ E  KK+ R T K + R IVGA L+VI+++R ++PEVR AAR AAL++ K++
Sbjct:    1 MKVEVCSFSGSKVYPGAGRLFVRGDNKVFRFVNKKSESLFLQRKNPRRLSWTVLYRRMHKKGISEEHAKKRTRRTVK-HQRGIVGANLDVIKEKRNQRPEVRAAARAAALKQRKDK 115          
BLAST of FC872155 vs. ExPASy Swiss-Prot
Match: RL24A_SCHPO (60S ribosomal protein L24-A OS=Schizosaccharomyces pombe GN=rpl24a PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 8.545e-27
Identity = 57/116 (49.14%), Postives = 82/116 (70.69%), Query Frame = 1
Query:   37 LKTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKER 384
            +K E+C FSG+K+YPG G  F+R D++VF F N K +  F  R  P +L+WT +YR+ HKK I+ E  KK+ R T K + R IVGA L+VI+++R ++PEVR AAR AAL++ K++
Sbjct:    1 MKVEVCSFSGSKVYPGAGRLFVRGDNKVFRFVNKKSESLFLQRKNPRRLSWTVLYRRMHKKGISEEHAKKRTRRTVK-HQRGIVGANLDVIKEKRNQRPEVRAAARAAALKQRKDK 115          
BLAST of FC872155 vs. ExPASy Swiss-Prot
Match: RL24_DEBHA (60S ribosomal protein L24 OS=Debaryomyces hansenii GN=RPL24 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.241e-26
Identity = 57/115 (49.57%), Postives = 81/115 (70.43%), Query Frame = 1
Query:   37 LKTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKE 381
            +K EL  FSG KIYPG+G  F+R DS++F F +SK    FH R  P +++WT +YR+QHKK I+ E+ K++ R T K   R+IVGA+LE+I++RR++KP  R AAR+  L + KE
Sbjct:    1 MKVELDSFSGTKIYPGRGTLFVRGDSKIFRFQSSKSASLFHQRKNPRRISWTVLYRRQHKKGISEESAKRRTRKTVK-NQRAIVGASLELIKERRSQKPSDRKAARDVKLAKDKE 114          
BLAST of FC872155 vs. ExPASy Swiss-Prot
Match: RL24_DICDI (60S ribosomal protein L24 OS=Dictyostelium discoideum GN=rpl24 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.612e-25
Identity = 56/116 (48.28%), Postives = 80/116 (68.97%), Query Frame = 1
Query:   37 LKTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKER 384
            +KT LC +S  KIYP +G++F+R DS+VF F N+K +  F  ++ P  + W+ +YR+ +K      + KKK R TKK   R+IVGA+LEVIQ++R +KPEV+ AA E A REIKE+
Sbjct:    1 MKTSLCNYSEFKIYPARGMKFVRGDSKVFHFINTKVESLFFRKINPRDIRWSMVYRRIYKNTTTDVSAKKKARKTKK-VERNIVGASLEVIQQKRAQKPEVKQAAAEQAKREIKEK 115          
BLAST of FC872155 vs. ExPASy Swiss-Prot
Match: RL24_ASHGO (60S ribosomal protein L24 OS=Ashbya gossypii GN=RPL24 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.612e-25
Identity = 56/116 (48.28%), Postives = 78/116 (67.24%), Query Frame = 1
Query:   37 LKTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTSMYRKQHKKDIAAEAVKKKRRSTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKER 384
            +K E+  FSGAKIYPG+G  F+R DS+VF F +SK    FH R  P ++ WT +YR+ HKK I  E  KK+ R T K   R++VGA+LE+I++RR+ KPE+R A R+   +  KE+
Sbjct:    1 MKVEIDSFSGAKIYPGRGTLFVRGDSKVFRFHSSKSASLFHQRKNPRRIAWTVLYRRHHKKGITEEVAKKRSRKTVKA-QRAVVGASLELIKERRSLKPEIRKAKRDEKAKADKEK 115          
The following BLAST results are available for this feature:
BLAST of FC872155 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
RL24_PRUAV2.380e-6185.0060S ribosomal protein L24 OS=Prunus avium GN=RPL24... [more]
RL24_HORVU3.217e-5880.7160S ribosomal protein L24 OS=Hordeum vulgare GN=RP... [more]
RL24_CICAR4.202e-5881.1660S ribosomal protein L24 OS=Cicer arietinum GN=RP... [more]
RL242_ARATH3.011e-5689.0860S ribosomal protein L24-2 OS=Arabidopsis thalian... [more]
RL241_ARATH3.933e-5689.0860S ribosomal protein L24-1 OS=Arabidopsis thalian... [more]
RL24B_SCHPO8.545e-2749.1460S ribosomal protein L24-B OS=Schizosaccharomyces... [more]
RL24A_SCHPO8.545e-2749.1460S ribosomal protein L24-A OS=Schizosaccharomyces... [more]
RL24_DEBHA4.241e-2649.5760S ribosomal protein L24 OS=Debaryomyces hansenii... [more]
RL24_DICDI1.612e-2548.2860S ribosomal protein L24 OS=Dictyostelium discoid... [more]
RL24_ASHGO1.612e-2548.2860S ribosomal protein L24 OS=Ashbya gossypii GN=RP... [more]

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Properties
Property NameValue
Genbank descriptionC05701C06SK AbsCOv1 Citrus clementina cDNA clone C05701C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872155 ID=FC872155; Name=FC872155; organism=Citrus clementina; type=EST; length=616bp
GGGGGTGCCGCGCAATCGACATCAGAAGCCATGGTTCTCAAGACTGAACT
GTGCCGCTTTAGTGGTGCCAAGATTTATCCTGGCAAGGGTATCAGATTCA
TTCGCTCTGATTCCCAGGTTTTCCTCTTTGCCAATTCAAAATGCAAGAGG
TACTTCCACAACCGCTTGAAGCCATCAAAGCTTACATGGACTTCCATGTA
CAGGAAACAACACAAGAAGGATATTGCTGCTGAGGCTGTAAAGAAGAAGC
GCCGCTCCACAAAGAAGCCATATTCAAGGTCTATTGTCGGTGCAACCTTG
GAAGTCATACAGAAGAGGAGGACTGAAAAGCCTGAAGTTCGAGATGCTGC
TCGTGAGGCTGCACTTCGTGAAATTAAGGAGAGGATCAAGAAGACCAAAG
ATGAAAAGAGGGCCAAGAAAGCTGAGGTGACATCCAAGTCAAAGACTCAA
AGCAAGGGTAGCATGCCCAAGGGTGCCGCTCCGAAGGGCCCCAAGCTTGG
TGGTGGTGGTGGAAAACGGTGAAGTGCTTCATCTCTTCATTTCTTCCTGA
CTACTATCTTAAACAATTAATATATTTATTCCATATTTTGTGAATGGATT
GGTCAATACTTGAGGG
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