FC872158

Overview
NameFC872158
Unique NameFC872158
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC872158_ssr459 microsatellite FC872158_ssr459:459..473. BLAST: Citrus ESTs to Populus V2 proteins
Homology
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BLAST of FC872158 vs. ExPASy Swiss-Prot
Match: Y4967_ARATH (Uncharacterized oxidoreductase At4g09670 OS=Arabidopsis thaliana GN=At4g09670 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.006e-11
Identity = 32/55 (58.18%), Postives = 43/55 (78.18%), Query Frame = 2 
Query:    2 PGETCMVREFSRLVANIKN-GSKPEQKWPIISRKTQLIIDAVKTSIERGFEPIEI 163
            P E CMVREF+RLV  IKN G+KP+  WP ISRKTQL++DAVK S+++ ++ I +
Sbjct:  305 PQEACMVREFARLVGEIKNNGAKPDGYWPSISRKTQLVVDAVKESVDKNYQQISL 359
The following BLAST results are available for this feature:
BLAST of FC872158 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y4967_ARATH1.006e-1158.18Uncharacterized oxidoreductase At4g09670 OS=Arabid... [more]
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Properties
Property NameValue
Genbank descriptionC05701C09SK AbsCOv1 Citrus clementina cDNA clone C05701C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872158 ID=FC872158; Name=FC872158; organism=Citrus clementina; type=EST; length=703bp
GCCGGGGGAAACTTGCATGGTGAGAGAGTTTTCCCGCTTGGTTGCAAATA
TTAAAAATGGTTCGAAGCCAGAGCAGAAGTGGCCAATCATAAGTAGGAAG
ACACAGCTAATTATTGATGCTGTCAAGACATCTATTGAAAGAGGTTTCGA
GCCTATTGAGATTAAGTGGTAAATAAGGCTTCTACTATGCTGTATTGGGT
GTTTTCCTTAAAAATTTGAGTGTTGTTTACGCATTTGTAATAAGATTTCC
AGATTCTTCGGCAATGTTCAGCATATGTAAGGTTTGCAGCTTGTGATGCG
TTGTTTCTACTGTCTGTTTTGACGTGTAAGTAGTAGCCCCCAGTTTTCAT
CGCTTCAGACCCCATAAGTCGGGAACCCCCATTAAATAAATATCAATAGG
GTGGTGGTAAACTAATGTAGTCCTTTACTCCAATAAGCCAGTAGTCAAAA
AAAAAAAATGTGGTGTGGTGTGGGCTTACAGCTTGAATCGCCCCGACCCA
TTTGGGCTAACACTTGGAGCTGTGGTTTAGTGGTCTGGGCCTACAATGGG
TTTCAGGGTTTGACCACCCGTTTTCTGTTGGCCAATCCGATGCATCGAGC
AAGTTAAGCCCGCTTGTTTTTTTTTTTTACCCCCCACTAAAGCCAAAAGG
TATTGGATACTATAAGGGGTAAATTTTTTTTATATATTACCACTTTTTTC
CCT
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