FC872339

Overview
NameFC872339
Unique NameFC872339
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length415
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9922 contig Ccv1_Contig9922:1..415. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC872339 vs. ExPASy Swiss-Prot
Match: Y5994_ARATH (Uncharacterized protein At5g49945 OS=Arabidopsis thaliana GN=At5g49945 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.785e-12
Identity = 34/41 (82.93%), Postives = 39/41 (95.12%), Query Frame = 3 
Query:    6 KKMIEEADAKLSAEAIRKKEAKERARQMKKAVPKMKMTRGH 128
            KKM+EEA+AK+SAE IRKKEAKERARQ+KKAVPKMKM+R H
Sbjct:  440 KKMMEEAEAKMSAEVIRKKEAKERARQVKKAVPKMKMSRSH 480
The following BLAST results are available for this feature:
BLAST of FC872339 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y5994_ARATH1.785e-1282.93Uncharacterized protein At5g49945 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAB1AH12ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB1AH12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872339 ID=FC872339; Name=FC872339; organism=Citrus clementina; type=EST; length=415bp
GGGGGAAGAAGATGATTGAGGAGGCAGATGCAAAGCTATCTGCAGAGGCT
ATTCGCAAGAAGGAAGCGAAAGAGCGTGCTCGTCAGATGAAGAAAGCTGT
GCCGAAGATGAAGATGACCCGAGGTCACTAGTCAATTTCCTGCTCTGTCA
TGTGGCACTCTGGAATTTGCCTTCTAGTTTTATCTCTATTTTTTGTGTCA
TACTTGGCCTACCTAGCCTTTACATAGGTTCTTGGCCTTCTCATGTATCC
TCCTGGCAAATGTACTTTTGTCAAATTGTATTAGCTAGTCTCCAGCATTA
CCACATCTCTGTGGTTTTTGAAGTGCACCCAAGTTTAGTCCTTTAGAAAC
CTTTATAAAGCTTATCATGGACACCTGTTTTACATAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAA
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