FC872369

Overview
NameFC872369
Unique NameFC872369
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872369 vs. ExPASy Swiss-Prot
Match: HDAC6_HUMAN (Histone deacetylase 6 OS=Homo sapiens GN=HDAC6 PE=1 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 2.503e-18
Identity = 44/110 (40.00%), Postives = 60/110 (54.55%), Query Frame = 3
Query:  129 VEPLTSCDHLATSLSSDLAHIPTPDTPCNRCQNPSENWLCLCCKEVLCSRFVNKHMLQHFRETNHSVALSYSDLSVWCFTCDAYLNAEVILQLRPVYETAYILKFGEAPP 458
            V PL  C HL        A +     PC  C    ENW+CL C +V C R++N HMLQH   + H + LSY DLS WC+ C AY++ + +L ++ +   A+  KFGE  P
Sbjct: 1107 VTPLPWCPHLVAVCPIPAAGLDVTQ-PCGDCGTIQENWVCLSCYQVYCGRYINGHMLQHHGNSGHPLVLSYIDLSAWCYYCQAYVHHQALLDVKNI---AHQNKFGEDMP 1212          
BLAST of FC872369 vs. ExPASy Swiss-Prot
Match: HDA6_CAEEL (Histone deacetylase 6 OS=Caenorhabditis elegans GN=hda-6 PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.622e-17
Identity = 50/136 (36.76%), Postives = 73/136 (53.68%), Query Frame = 3
Query:   51 ATSSSTLPENGPVEEDEMMFGAESGWVEPLTSCDHLATSLSSDLAHIPTPDTPCNRCQNPSENWLCLCCKEVLCSRFVNKHMLQHFRETNHSVALSYSDLSVWCFTCDAYLNAEVILQLRPVYETAYILKFGEAPP 458
            ++SSST P +      E+M    +  V PL +C HL        A I    T C+ CQ  +E W CL C +  C RFVN+H + H   ++H +ALS +DLSVWC+ CD+Y++   ++  +     A+  KFGE  P
Sbjct:  827 SSSSSTRPSHNL----EIMDSGPAHAVVPLATCPHLKEVKPLPPAKI-NARTACSECQIGAEVWTCLTCYKYNCGRFVNEHAMMHHLSSSHPMALSMADLSVWCYPCDSYVHNPALIGAK---SAAHESKFGETMP 954          
BLAST of FC872369 vs. ExPASy Swiss-Prot
Match: HDAC6_MOUSE (Histone deacetylase 6 OS=Mus musculus GN=Hdac6 PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 4.720e-17
Identity = 44/110 (40.00%), Postives = 58/110 (52.73%), Query Frame = 3
Query:  129 VEPLTSCDHLATSLSSDLAHIPTPDTPCNRCQNPSENWLCLCCKEVLCSRFVNKHMLQHFRETNHSVALSYSDLSVWCFTCDAYLNAEVILQLRPVYETAYILKFGEAPP 458
            V PL+ C HL        A +     PC  C    ENW+CL C +V CSR+VN HM+ H   + H + LS  DLS WC+ C AY++ +    L+ V   A+  KFGE  P
Sbjct: 1041 VTPLSWCPHLMAVCPIPAAGLDVSQ-PCKTCGTVQENWVCLTCYQVYCSRYVNAHMVCHHEASEHPLVLSCVDLSTWCYVCQAYVHQD---DLQDVKNAAHQNKFGEDMP 1146          
BLAST of FC872369 vs. ExPASy Swiss-Prot
Match: UBP44_HUMAN (Ubiquitin carboxyl-terminal hydrolase 44 OS=Homo sapiens GN=USP44 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.621e-11
Identity = 27/83 (32.53%), Postives = 46/83 (55.42%), Query Frame = 3
Query:  138 LTSCDHLAT-SLSSDLAHIPTPDTPCNRCQNPSENWLCLCCKEVLCSRFVNKHMLQHFRETNHSVALSYSDLSVWCFTCDAYL 383
            + +C H+    L+ D + +      C  C      W CL C  V C R++ +H L+HF+E++H VAL  +++ V+C+ CD Y+
Sbjct:    4 MDTCKHVGQLQLAQDHSSLNPQKWHCVDCNTTESIWACLSCSHVACGRYIEEHALKHFQESSHPVALEVNEMYVFCYLCDDYV 86          
The following BLAST results are available for this feature:
BLAST of FC872369 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
HDAC6_HUMAN2.503e-1840.00Histone deacetylase 6 OS=Homo sapiens GN=HDAC6 PE=... [more]
HDA6_CAEEL1.622e-1736.76Histone deacetylase 6 OS=Caenorhabditis elegans GN... [more]
HDAC6_MOUSE4.720e-1740.00Histone deacetylase 6 OS=Mus musculus GN=Hdac6 PE=... [more]
UBP44_HUMAN8.621e-1132.53Ubiquitin carboxyl-terminal hydrolase 44 OS=Homo s... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAB1BA02ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB1BA02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872369 ID=FC872369; Name=FC872369; organism=Citrus clementina; type=EST; length=714bp
GGGGGCCTTGCCAAATCCTCAAACTTGAAAATCTCGGTCGACTCGTTATG
GCGACCTCTTCCTCAACACTGCCGGAAAACGGACCCGTAGAGGAGGATGA
GATGATGTTCGGAGCGGAATCGGGTTGGGTAGAACCTCTGACCTCTTGTG
ATCACCTCGCTACTTCCTTGTCGTCTGATCTCGCTCACATACCAACTCCC
GATACACCTTGCAACAGGTGCCAAAACCCGAGTGAAAACTGGCTATGTTT
GTGTTGCAAGGAAGTGCTTTGCAGCCGTTTTGTGAACAAGCACATGCTTC
AGCATTTCCGGGAAACAAACCATTCTGTGGCATTAAGCTATAGTGACCTG
TCGGTTTGGTGTTTCACCTGCGATGCATATTTAAATGCTGAAGTGATTCT
GCAACTGCGACCCGTTTATGAGACTGCTTACATTCTGAAATTTGGTGAGG
CCCCTCCTTTTCATATAGGAGAGCATCCAAAGGTTGAAGATCAGTAGACT
GAGGGTACATGTTTAGACAGTTACATGATATCTTTGATTACAGGTTTTTG
TTCTTCTCTAATCTTTGATGATGTAAGTTAGTTTGGGGATGATTTTGGTT
TTAGTTAAATGTGGTGATTTCGGTATTGGATCTCCTAATTGTAATGCAAA
ATGAGAACTGAGAAGCATTTCATTGTTACTTGATTTGATTTTCAATGACG
GTTTATGTGTGAAG
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