FC872369
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC872369 vs. ExPASy Swiss-Prot
Match: HDAC6_HUMAN (Histone deacetylase 6 OS=Homo sapiens GN=HDAC6 PE=1 SV=2) HSP 1 Score: 92.4337 bits (228), Expect = 2.503e-18 Identity = 44/110 (40.00%), Postives = 60/110 (54.55%), Query Frame = 3 Query: 129 VEPLTSCDHLATSLSSDLAHIPTPDTPCNRCQNPSENWLCLCCKEVLCSRFVNKHMLQHFRETNHSVALSYSDLSVWCFTCDAYLNAEVILQLRPVYETAYILKFGEAPP 458 V PL C HL A + PC C ENW+CL C +V C R++N HMLQH + H + LSY DLS WC+ C AY++ + +L ++ + A+ KFGE P Sbjct: 1107 VTPLPWCPHLVAVCPIPAAGLDVTQ-PCGDCGTIQENWVCLSCYQVYCGRYINGHMLQHHGNSGHPLVLSYIDLSAWCYYCQAYVHHQALLDVKNI---AHQNKFGEDMP 1212
BLAST of FC872369 vs. ExPASy Swiss-Prot
Match: HDA6_CAEEL (Histone deacetylase 6 OS=Caenorhabditis elegans GN=hda-6 PE=2 SV=2) HSP 1 Score: 89.7373 bits (221), Expect = 1.622e-17 Identity = 50/136 (36.76%), Postives = 73/136 (53.68%), Query Frame = 3 Query: 51 ATSSSTLPENGPVEEDEMMFGAESGWVEPLTSCDHLATSLSSDLAHIPTPDTPCNRCQNPSENWLCLCCKEVLCSRFVNKHMLQHFRETNHSVALSYSDLSVWCFTCDAYLNAEVILQLRPVYETAYILKFGEAPP 458 ++SSST P + E+M + V PL +C HL A I T C+ CQ +E W CL C + C RFVN+H + H ++H +ALS +DLSVWC+ CD+Y++ ++ + A+ KFGE P Sbjct: 827 SSSSSTRPSHNL----EIMDSGPAHAVVPLATCPHLKEVKPLPPAKI-NARTACSECQIGAEVWTCLTCYKYNCGRFVNEHAMMHHLSSSHPMALSMADLSVWCYPCDSYVHNPALIGAK---SAAHESKFGETMP 954
BLAST of FC872369 vs. ExPASy Swiss-Prot
Match: HDAC6_MOUSE (Histone deacetylase 6 OS=Mus musculus GN=Hdac6 PE=1 SV=2) HSP 1 Score: 88.1965 bits (217), Expect = 4.720e-17 Identity = 44/110 (40.00%), Postives = 58/110 (52.73%), Query Frame = 3 Query: 129 VEPLTSCDHLATSLSSDLAHIPTPDTPCNRCQNPSENWLCLCCKEVLCSRFVNKHMLQHFRETNHSVALSYSDLSVWCFTCDAYLNAEVILQLRPVYETAYILKFGEAPP 458 V PL+ C HL A + PC C ENW+CL C +V CSR+VN HM+ H + H + LS DLS WC+ C AY++ + L+ V A+ KFGE P Sbjct: 1041 VTPLSWCPHLMAVCPIPAAGLDVSQ-PCKTCGTVQENWVCLTCYQVYCSRYVNAHMVCHHEASEHPLVLSCVDLSTWCYVCQAYVHQD---DLQDVKNAAHQNKFGEDMP 1146
BLAST of FC872369 vs. ExPASy Swiss-Prot
Match: UBP44_HUMAN (Ubiquitin carboxyl-terminal hydrolase 44 OS=Homo sapiens GN=USP44 PE=2 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 8.621e-11 Identity = 27/83 (32.53%), Postives = 46/83 (55.42%), Query Frame = 3 Query: 138 LTSCDHLAT-SLSSDLAHIPTPDTPCNRCQNPSENWLCLCCKEVLCSRFVNKHMLQHFRETNHSVALSYSDLSVWCFTCDAYL 383 + +C H+ L+ D + + C C W CL C V C R++ +H L+HF+E++H VAL +++ V+C+ CD Y+ Sbjct: 4 MDTCKHVGQLQLAQDHSSLNPQKWHCVDCNTTESIWACLSCSHVACGRYIEEHALKHFQESSHPVALEVNEMYVFCYLCDDYV 86 The following BLAST results are available for this feature:
BLAST of FC872369 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 4
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC872369 ID=FC872369; Name=FC872369; organism=Citrus clementina; type=EST; length=714bpback to top |