FC872379

Overview
NameFC872379
Unique NameFC872379
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length910
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9934 contig Ccv1_Contig9934:1..910. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872379 vs. ExPASy Swiss-Prot
Match: IPT2_ARATH (tRNA isopentenyltransferase 2 OS=Arabidopsis thaliana GN=IPT2 PE=1 SV=2)

HSP 1 Score: 218.779 bits (556), Expect = 1.315e-87
Identity = 109/183 (59.56%), Postives = 136/183 (74.32%), Query Frame = 2
Query:  362 QNWGRVDNFRFNCCFICVDAANPVLDRYVEQRVDCMIDAGLLDEVYDIYNANADYTRGLRQAIGVREFEDFLSVYHSVDRDNKTSGPTNATLNSRNKDDKTLKDCMRAILKSSADDQLKVLLEEAIDRVKLNTRRLVRCQKRRLNHLQTLFGWDIHYVDSTESISCKSDEVWTAQVVGPAVKI 910
            +NWG ++  RF+ C IC+DA   VLDRYVEQRVD M+DAGLLDEVYDIY   ADYTRGLRQ+IGVREFEDFL ++         S      L S + DDK +K+ +R IL    DD+L+++LEEAIDRVKLNTRRL+R QKRR++ L+T+FGW+IHY+D+TE I  KS+E W AQVV PA +I
Sbjct:  214 ENWGCINASRFDYCLICMDAETAVLDRYVEQRVDAMVDAGLLDEVYDIYKPGADYTRGLRQSIGVREFEDFLKIH--------LSETCAGHLTSLSNDDKVMKENLRKILNFPKDDKLRIMLEEAIDRVKLNTRRLLRRQKRRVSRLETVFGWNIHYIDATEYILSKSEESWNAQVVKPASEI 388          

HSP 2 Score: 125.561 bits (314), Expect = 1.315e-87
Identity = 68/119 (57.14%), Postives = 80/119 (67.23%), Query Frame = 3
Query:    6 DSAVPLISEILSRDHIPFIVGGTNYYIQALVSPFLLNDSAEDMDESCFGSLSG-DEPVGPXXXXXXXXXXXXXXXXXXXXPVAANRIHPNNYRKINQYLSLYARTGVLPSKLYQGKAAE 359
            D  VPLI EI+SR+HIP +VGGT+YYIQA+VS FLL+D+AED +E C    S  D+ +                      PVAANRIHPNN+RKINQYLSL+A  GVLPSKLYQGK AE
Sbjct:   96 DFTVPLIEEIVSRNHIPVLVGGTHYYIQAVVSKFLLDDAAEDTEECCADVASVVDQDMVVESVFGRDDLSHGYELLKELDPVAANRIHPNNHRKINQYLSLHASRGVLPSKLYQGKTAE 214          
BLAST of FC872379 vs. ExPASy Swiss-Prot
Match: IPT5_ARATH (Adenylate isopentenyltransferase 5, chloroplastic OS=Arabidopsis thaliana GN=IPT5 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.872e-17
Identity = 55/175 (31.43%), Postives = 92/175 (52.57%), Query Frame = 2
Query:  389 RFNCCFICVDAANPVLDRYVEQRVDCMIDAGLLDEVYDIYN-ANADYTRGLRQAIGVREFEDFLSVYHSVDRDNKTSGPTNATLNSRNKDDKTLKDCMRAILKSSADDQLKVLLEEAIDRVKLNTRRLVRCQKRRLNHLQTLFGWDIHYVDSTESI---SCKSDEVWTAQVVGPA 901
            R+NCCF+ VD + PVL  +V +RVD M++ GL+DEV  I++ +++DY+ G+R+AIGV E ++FL                                  R+ +++   +  + LLE AI+++K NT  L   Q +++  L   + W++H VD+TE       ++DE W   V  P+
Sbjct:  149 RYNCCFLWVDVSRPVLHSFVSERVDKMVEMGLVDEVRRIFDPSSSDYSAGIRRAIGVPELDEFL----------------------------------RSEMRNYPAETTERLLETAIEKIKENTCLLACRQLQKIQRLYKQWKWNMHRVDATEVFLRRGEEADEAWDNSVAHPS 289          
BLAST of FC872379 vs. ExPASy Swiss-Prot
Match: IPT7_ARATH (Adenylate isopentenyltransferase 7, mitochondrial OS=Arabidopsis thaliana GN=IPT7 PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 3.531e-16
Identity = 54/177 (30.51%), Postives = 87/177 (49.15%), Query Frame = 2
Query:  392 FNCCFICVDAANPVLDRYVEQRVDCMIDAGLLDEVYDIYNANADYTRGLRQAIGVREFEDFLSVYHSVDRDNKTSGPTNATLNSRNKDDKTLKDCMRAILKSSADDQLKVLLEEAIDRVKLNTRRLVRCQKRRLNHLQTLFGWDIHYVDSTESISCKS----DEVWTAQVVGPAVKI 910
            ++CCFI VD + PVL+ +V +RVD M++AGLL+EV +++N  A+Y+ G+R+AIGV E  ++L     VDR  K+                                    +L+ A+  +K NT  L   Q +++  L   +   +H VD+TE    ++    DE W   V  P+ +I
Sbjct:  152 YDCCFIWVDVSLPVLNSFVSKRVDRMMEAGLLEEVREVFNPKANYSVGIRRAIGVPELHEYLRNESLVDRATKSK-----------------------------------MLDVAVKNIKKNTEILACRQLKKIQRLHKKWKMSMHRVDATEVFLKRNVEEQDEAWENLVARPSERI 293          
BLAST of FC872379 vs. ExPASy Swiss-Prot
Match: MOD5_HUMAN (tRNA isopentenyltransferase, mitochondrial OS=Homo sapiens GN=TRIT1 PE=1 SV=1)

HSP 1 Score: 53.5286 bits (127), Expect = 5.989e-15
Identity = 33/118 (27.97%), Postives = 57/118 (48.31%), Query Frame = 3
Query:   12 AVPLISEILSRDHIPFIVGGTNYYIQALVSPFLLNDSAEDMDESCFGSLSGDEPVGPXXXXXXXXXXXXXXXXXXXXPVAANRIHPNNYRKINQYLSLYARTGVLPSK-LYQGKAAEG 362
            A  LI +I +RD IP +VGGTNYYI++L+   L+N   ++M          ++ +                      P  A ++HP++ RK+ + L ++  TG+  S+ L++    EG
Sbjct:  102 ATALIEDIFARDKIPIVVGGTNYYIESLLWKVLVNTKPQEMGT--------EKVIDRKVELEKEDGLVLHKRLSQVDPEMAAKLHPHDKRKVARSLQVFEETGISHSEFLHRQHTEEG 211          

HSP 2 Score: 47.3654 bits (111), Expect = 5.989e-15
Identity = 25/70 (35.71%), Postives = 40/70 (57.14%), Query Frame = 2
Query:  395 NCCFICVDAANPVLDRYVEQRVDCMIDAGLLDEVYDIYNA---------NADYTRGLRQAIGVREFEDFL 577
            N C + + A   VLD  +++RVD M+ AGLL+E+ D +           + DY  G+ Q+IG +EF ++L
Sbjct:  223 NPCILWLHADQAVLDERLDKRVDDMLAAGLLEELRDFHRRYNQKNVSENSQDYQHGIFQSIGFKEFHEYL 292          
BLAST of FC872379 vs. ExPASy Swiss-Prot
Match: MOD5_MOUSE (tRNA isopentenyltransferase, mitochondrial OS=Mus musculus GN=Trit1 PE=2 SV=2)

HSP 1 Score: 53.1434 bits (126), Expect = 1.314e-14
Identity = 34/120 (28.33%), Postives = 57/120 (47.50%), Query Frame = 3
Query:    6 DSAVPLISEILSRDHIPFIVGGTNYYIQALVSPFLLNDSAEDMDESCFGSLSGDEPVGPXXXXXXXXXXXXXXXXXXXXPVAANRIHPNNYRKINQYLSLYARTGVLPSK-LYQGKAAEG 362
            + A  LI +I +RD IP +VGGTNYYI++L+   L+    ++M           + V                      P  A ++HP++ RK+ + L ++  TG+  S+ L++  A EG
Sbjct:  100 NKATALIEDIFARDKIPIVVGGTNYYIESLLWKVLITTKPQEMGTG--------KVVDRKVELEKEDGHELHKRLSQVDPEMAAKLHPHDKRKVARSLQVFEETGISHSEFLHRQHAEEG 211          

HSP 2 Score: 46.595 bits (109), Expect = 1.314e-14
Identity = 26/71 (36.62%), Postives = 43/71 (60.56%), Query Frame = 2
Query:  395 NCCFICVDAANPVLDRYVEQRVDCMIDAGLLDEV------YDIYNA---NADYTRGLRQAIGVREFEDFLS 580
            N C + + A   VLD  +++RVD M+ AGLL+E+      Y++ N    + DY  G+ Q+IG +EF ++L+
Sbjct:  223 NPCILWLHADQAVLDERLDKRVDDMLAAGLLEELRGFHRRYNLKNISENSQDYQHGIFQSIGFKEFHEYLT 293          
BLAST of FC872379 vs. ExPASy Swiss-Prot
Match: IPT3_ARATH (Adenylate isopentenyltransferase 3, chloroplastic OS=Arabidopsis thaliana GN=IPT3 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.317e-14
Identity = 49/177 (27.68%), Postives = 89/177 (50.28%), Query Frame = 2
Query:  389 RFNCCFICVDAANPVLDRYVEQRVDCMIDAGLLDEVYDIYN-ANADYTRGLRQAIGVREFEDFLSVYHSVDRDNKTSGPTNATLNSRNKDDKTLKDCMRAILKSSADDQLKVLLEEAIDRVKLNTRRLVRCQKRRLNHLQTLFGWDIHYVDSTESISCKSDEV-----WTAQVVGPA 901
            R++CCF+ VD A PVL  +V +RVD M+++G+++EV + ++ +N+DY+RG+++AIG  EF+ F                       RN+    ++D              + LL + ++ +K NT  L   Q+ ++  L+ +  W I  VD+T   + +  ++     W   V GP+
Sbjct:  157 RYDCCFLWVDVALPVLHGFVSERVDKMVESGMVEEVREFFDFSNSDYSRGIKKAIGFPEFDRFF----------------------RNEQFLNVED-------------REELLSKVLEEIKRNTFELACRQREKIERLRKVKKWSIQRVDATPVFTKRRSKMDANVAWERLVAGPS 298          
BLAST of FC872379 vs. ExPASy Swiss-Prot
Match: IPT8_ARATH (Adenylate isopentenyltransferase 8, chloroplastic OS=Arabidopsis thaliana GN=IPT8 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.638e-14
Identity = 53/178 (29.78%), Postives = 87/178 (48.88%), Query Frame = 2
Query:  389 RFNCCFICVDAANPVLDRYVEQRVDCMIDAGLLDEV---YD-IYNANADYTRGLRQAIGVREFEDFLSVYHSVDRDNKTSGPTNATLNSRNKDDKTLKDCMRAILKSSADDQLKVLLEEAIDRVKLNTRRLVRCQKRRLNHLQTLFGWDIHYVDSTESISCKSDEVWTAQVVGPAVKI 910
            R+ CCF+ VD +  VL  Y+ +RVD M+++G+ +E+   YD  Y+ +A    G+ + IG+ EF+ + S+Y   +R  K                            S  D   K   +EA+  +K NT RL + Q  R+  L++  GWDI  +D+T S    S E+W   V+  ++K+
Sbjct:  172 RYECCFLWVDVSVSVLFEYLSKRVDQMMESGMFEELAGFYDPRYSGSAIRAHGIHKTIGIPEFDRYFSLY-PPERKQK---------------------------MSEWDQARKGAYDEAVQEIKENTWRLAKKQIERIMKLKS-SGWDIQRLDATPSFGRSSREIWDNTVLDESIKV 320          
BLAST of FC872379 vs. ExPASy Swiss-Prot
Match: IPT_HUMLU (Adenylate isopentenyltransferase OS=Humulus lupulus PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.142e-13
Identity = 57/189 (30.16%), Postives = 91/189 (48.15%), Query Frame = 2
Query:  389 RFNCCFICVDAANPVLDRYVEQRVDCMIDAGLLDEVYDIYNANAD------YTR-GLRQAIGVREFEDFLSVYHSVDRDNKTSGPTNATLNSRNKDDKTLKDCMRAILKSSADDQLKVLLEEAIDRVKLNTRRLVRCQKRRLNHLQTLFGWDIHYVDSTESISC--------KSDEVWTAQVVGPAVKI 910
            R++CCF+ VD +  VL  Y+ +RVD M++ G+ DE+ + Y+   +       TR GLR+AIGV EF+ +   +   D + +  G                +D +R           +   EEA+  +K NT  L + Q  ++  L+   GWD+  +D+TES           K  E+W  QV+ P+VKI
Sbjct:  162 RYDCCFLWVDVSVKVLTDYLAKRVDDMLELGMFDELAEFYSPEDEDHDEDSATRTGLRKAIGVPEFDRYFEKFRPGDVEGEDPG----------------RDRVR-----------RGAFEEAVRAIKENTCHLAKRQIGKILRLKGA-GWDLRRLDATESFRAAMTSDSGEKCTEIWEKQVLEPSVKI 322          
BLAST of FC872379 vs. ExPASy Swiss-Prot
Match: IPT1_ARATH (Adenylate isopentenyltransferase 1, chloroplastic OS=Arabidopsis thaliana GN=IPT1 PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 3.654e-13
Identity = 57/189 (30.16%), Postives = 89/189 (47.09%), Query Frame = 2
Query:  383 NFRFNCCFICVDAANPVLDRYVEQRVDCMIDAGLLDEV---YDIYNANADYTRGLRQAIGVREFEDFLSVYHSVDRDNKTSGPTNATLNSRNKDDKTLK-DCMRAILKSSADDQLKVLLEEAIDRVKLNTRRLVRCQKRRLNHLQTLFGWDIHYVDSTESISC---------KSDEVWTAQVVGPAVKI 910
            + R+ CCFI VD +  VL  Y+ +RVD M+D+G+ +E+   YD   +  +   G+R+AIGV EF+ +   Y                      + K +K D +R           K   ++A+D +K NT  L + Q +++  L+   GW+I  VD+T S            K  E W  QV+ P+VKI
Sbjct:  193 DLRYECCFIWVDVSETVLYEYLLRRVDEMMDSGMFEELSRFYDPVKSGLETRFGIRKAIGVPEFDGYFKEY--------------------PPEKKMIKWDALR-----------KAAYDKAVDDIKRNTWTLAKRQVKKIEMLKDA-GWEIERVDATASFKAVMMKSSSEKKWRENWEEQVLEPSVKI 349          
BLAST of FC872379 vs. ExPASy Swiss-Prot
Match: MOD5_SCHPO (tRNA isopentenyltransferase OS=Schizosaccharomyces pombe GN=SPAC343.15 PE=2 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 9.079e-12
Identity = 34/107 (31.78%), Postives = 49/107 (45.79%), Query Frame = 3
Query:   21 LISEILSRDHIPFIVGGTNYYIQALVSPFLLNDSAEDMDESCFGSLSGDEPVGPXXXXXXXXXXXXXXXXXXXXPVAANRIHPNNYRKINQYLSLYARTGVLPSKLY 341
            +I EI S+  IP +VGGT+YY+Q+L    L  D+     +      S  +P  P                    PV A + HP + RKI + L +Y  TG  PS++Y
Sbjct:   84 VIDEIHSQGKIPIVVGGTHYYLQSL----LFEDTTLSAIDKLTNDSSPSKPPHPDSHILDDDPSAMLSYLKKIDPVMAEQWHPRDTRKIRRSLEIYFHTGRPPSEIY 186          

HSP 2 Score: 35.039 bits (79), Expect = 9.079e-12
Identity = 21/65 (32.31%), Postives = 35/65 (53.85%), Query Frame = 2
Query:  389 RFNCCFICVDAANPVLDRYVEQRVDCMIDAGLLDEVYDIYNA------NADYTRGLRQAIGVREF 565
            R+        A + VL   +++RVD M+  GL+DE+  + +       + D+TRG+ Q IG +EF
Sbjct:  199 RYKSLIFWAFADSLVLMPRLDKRVDKMLSHGLVDEIKSMKSLAESEKFSPDFTRGIWQCIGFKEF 263          
The following BLAST results are available for this feature:
BLAST of FC872379 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
IPT2_ARATH1.315e-8759.56tRNA isopentenyltransferase 2 OS=Arabidopsis thali... [more]
IPT5_ARATH1.872e-1731.43Adenylate isopentenyltransferase 5, chloroplastic ... [more]
IPT7_ARATH3.531e-1630.51Adenylate isopentenyltransferase 7, mitochondrial ... [more]
MOD5_HUMAN5.989e-1527.97tRNA isopentenyltransferase, mitochondrial OS=Homo... [more]
MOD5_MOUSE1.314e-1428.33tRNA isopentenyltransferase, mitochondrial OS=Mus ... [more]
IPT3_ARATH4.317e-1427.68Adenylate isopentenyltransferase 3, chloroplastic ... [more]
IPT8_ARATH5.638e-1429.78Adenylate isopentenyltransferase 8, chloroplastic ... [more]
IPT_HUMLU2.142e-1330.16Adenylate isopentenyltransferase OS=Humulus lupulu... [more]
IPT1_ARATH3.654e-1330.16Adenylate isopentenyltransferase 1, chloroplastic ... [more]
MOD5_SCHPO9.079e-1231.78tRNA isopentenyltransferase OS=Schizosaccharomyces... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAB1BB02ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB1BB02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872379 ID=FC872379; Name=FC872379; organism=Citrus clementina; type=EST; length=910bp
GGGGAGATTCTGCTGTTCCTCTTATCAGTGAGATATTATCACGTGATCAC
ATACCATTCATTGTTGGGGGTACAAACTACTATATTCAGGCTCTTGTGAG
TCCATTTCTTCTAAATGATTCAGCAGAAGATATGGATGAAAGCTGCTTTG
GCAGCCTTTCTGGGGATGAGCCGGTTGGTCCTGACTCTGACTTAGCAAGA
GACAGTTCTAGCTATAGTTATGACCTCCTCAAAGACCTTGACCCAGTTGC
AGCAAACAGAATTCATCCAAATAACTATAGAAAAATCAACCAATACCTTA
GCTTGTATGCACGCACTGGAGTTCTCCCTAGCAAACTTTATCAAGGAAAA
GCCGCTGAGGGCAGAACTGGGGCCGAGTAGACAATTTTAGATTCAATTGC
TGCTTTATATGTGTTGACGCCGCAAATCCTGTGCTGGACCGATATGTGGA
ACAAAGAGTTGACTGCATGATAGATGCTGGATTGCTTGATGAGGTGTATG
ACATTTACAATGCGAATGCTGATTATACCAGAGGTCTGCGGCAGGCCATA
GGTGTTCGGGAGTTTGAGGATTTTCTGAGCGTTTACCATTCTGTGGACAG
AGATAACAAGACAAGTGGACCTACTAATGCAACTCTGAATTCTAGAAACA
AGGATGACAAGACATTGAAAGACTGTATGAGAGCAATACTTAAGTCATCC
GCTGATGATCAACTAAAAGTACTTTTAGAAGAGGCCATTGATCGAGTAAA
ATTAAACACCAGAAGACTTGTTCGATGTCAAAAGAGGAGGCTCAATCATC
TTCAAACTTTGTTTGGATGGGACATTCATTATGTTGATTCAACAGAATCC
ATTTCATGCAAATCAGATGAAGTGTGGACTGCACAAGTGGTTGGACCTGC
TGTGAAAATT
back to top