FC872384

Overview
NameFC872384
Unique NameFC872384
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length904
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC872384_ssr831 microsatellite FC872384_ssr831:831..842. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC872384 vs. ExPASy Swiss-Prot
Match: BET12_ARATH (Bet1-like SNARE 1-2 OS=Arabidopsis thaliana GN=BET12 PE=2 SV=4)

HSP 1 Score: 101.679 bits (252), Expect = 5.395e-30
Identity = 49/76 (64.47%), Postives = 65/76 (85.53%), Query Frame = 2 
Query:  158 MSYRREHRASKGALFDEYDGLEEGGLKASSSYSSGIDEHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRM 385
            M++RRE+RAS+ +LFD  DGLEEG L+ASSSY+   DE DND+A++ L++R  FLKR+TGDIHEEVE+HNRLLD++
Sbjct:    1 MNFRRENRASRTSLFDGLDGLEEGRLRASSSYAH--DERDNDEALENLQDRVSFLKRVTGDIHEEVENHNRLLDKV 74

HSP 2 Score: 51.2174 bits (121), Expect = 5.395e-30
Identity = 24/48 (50.00%), Postives = 33/48 (68.75%), Query Frame = 3 
Query:  387 MDASRGIMSGTMDRFKMVFEKKSNQRICTLVGXXXXXXXXXXXXIRVL 530
            MD++RGIMSGT++RFK+VFEKKSN++ C L+             IR+L
Sbjct:   78 MDSARGIMSGTINRFKLVFEKKSNRKSCKLIAYFVLLFLIMYYLIRLL 125
[Close]
BLAST of FC872384 vs. ExPASy Swiss-Prot
Match: BET11_ARATH (Bet1-like SNARE 1-1 OS=Arabidopsis thaliana GN=BET11 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.199e-27
Identity = 43/76 (56.58%), Postives = 64/76 (84.21%), Query Frame = 2 
Query:  158 MSYRREHRASKGALFDEYDGLEEGGLKASSSYSSGIDEHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRM 385
            M+ RRE R  + +LFD   G+EEGG++A+SSYS  I+EH+N++A++GL++R + LKRL+GDI+EEV++HNR+LDRM
Sbjct:    1 MNPRREPRGGRSSLFD---GIEEGGIRAASSYSHEINEHENERALEGLQDRVILLKRLSGDINEEVDTHNRMLDRM 73

HSP 2 Score: 48.1358 bits (113), Expect = 5.199e-27
Identity = 22/31 (70.97%), Postives = 27/31 (87.10%), Query Frame = 3 
Query:  387 MDASRGIMSGTMDRFKMVFEKKSNQRICTLV 479
            MD+SRG +SGTMDRFK VFE KS++R+ TLV
Sbjct:   77 MDSSRGFLSGTMDRFKTVFETKSSRRMLTLV 107
The following BLAST results are available for this feature:
BLAST of FC872384 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
BET12_ARATH5.395e-3064.47Bet1-like SNARE 1-2 OS=Arabidopsis thaliana GN=BET... [more]
BET11_ARATH5.199e-2756.58Bet1-like SNARE 1-1 OS=Arabidopsis thaliana GN=BET... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAB1BB08ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB1BB08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872384 ID=FC872384; Name=FC872384; organism=Citrus clementina; type=EST; length=904bp
GGGGAACTTTCTTTTTTTTCGTTTTAAAATTTTTTCCTTCCACTCCGCTG
CATTTTCTCAGCATCCAAACAACTAATTGATCACTGATGCATCATCAACT
TGCGTGATCGTAGAAACAGAGACGAACGCGCGCAGGAGCTGCCGGTTATC
GTAAATCATGAGTTACAGAAGGGAGCACCGTGCCTCTAAAGGGGCTCTCT
TTGATGAGTATGACGGCCTTGAGGAAGGTGGTCTTAAGGCCTCATCCTCA
TATTCCAGTGGAATCGATGAGCATGACAATGACAAAGCAATCGACGGTCT
GAAAGAAAGAGCAGTTTTTCTGAAGAGATTAACAGGCGACATACACGAGG
AGGTAGAAAGTCATAATCGTTTGCTTGATCGAATGTATGGATGCATCAAG
GGGTATCATGTCAGGAACCATGGATCGCTTTAAGATGGTGTTCGAGAAGA
AATCTAACCAGAGAATATGTACTCTAGTGGGATCTTTTGTAGTTTCCTTC
TTCGTTCTCTACTATCTCATTAGGGTCCTCATGCGTGGTTGAAGTAGAAC
ATTAAATCTTGCCTGTGCAAGTCTGCAATTTGGGTATGGGAATTGGTTCA
TGTACAATTGTACAGCTTGTAATCTTCATCGCTAAATCCTTTTTTCCTTA
TCTTTTTGAAAATACGATTAAAAAAAAGCTCGGGGCTTAATGGAGAAAAT
TGGTTTATGAATATGCTAAACTGAATTGCCCATGAAAGAGGGCGGCCGTC
ATGCTTTCATTACAAGGGAATGTTAATAGACAGAGCTATCTAGGGACGTT
TAGGAGCATATGCCTCTCACATTCATTGATTTTATTTATTTATTTTTTTT
TGAAAAAAAAAATATAGAAATTTTATTGTCTCTCGAAAAAAAAAAAAAAA
AAAA
back to top