FC872390

Overview
NameFC872390
Unique NameFC872390
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length793
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9938 contig Ccv1_Contig9938:1..793. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872390 vs. ExPASy Swiss-Prot
Match: UBC21_ARATH (Probable ubiquitin carrier protein E2 21 OS=Arabidopsis thaliana GN=UBC21 PE=1 SV=1)

HSP 1 Score: 301.982 bits (772), Expect = 2.509e-81
Identity = 141/150 (94.00%), Postives = 147/150 (98.00%), Query Frame = 2
Query:   11 LFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMYTRLAAMPKKG 460
            LFKEYKEVQREK ADPDIQL+CDD+NIFKWTALIKGPS+TPYEGGVFQLAF+VPE YPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGD+RGF SMA+MYTRLAAMPKKG
Sbjct:    8 LFKEYKEVQREKVADPDIQLICDDTNIFKWTALIKGPSETPYEGGVFQLAFSVPEPYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGFNSMAQMYTRLAAMPKKG 157          
BLAST of FC872390 vs. ExPASy Swiss-Prot
Match: UBCX_DICDI (Ubiquitin-conjugating enzyme E2 pex4 OS=Dictyostelium discoideum GN=pex4 PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 3.307e-49
Identity = 88/143 (61.54%), Postives = 115/143 (80.42%), Query Frame = 2
Query:   11 LFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMYTRL 439
            L KEYK +Q E+  D  +    D+S++++W A+IKGP  TPYE G F+L  +VP  YPLQPP ++F+TKIFHPN+HFKTGEICLD+LK +WS  +TLQSVCR+IIAL++ PE DSPLNCD+GNL+R+GD++G  S+ARMYTRL
Sbjct:    5 LMKEYKVLQNEEFEDI-LLYPRDESDLYRWVAIIKGPPDTPYENGKFELDISVPTNYPLQPPTIKFVTKIFHPNIHFKTGEICLDLLKTSWSAIYTLQSVCRSIIALLSLPEADSPLNCDAGNLIRNGDVKGHDSLARMYTRL 146          
BLAST of FC872390 vs. ExPASy Swiss-Prot
Match: UBC16_SCHPO (Ubiquitin-conjugating enzyme E2 16 OS=Schizosaccharomyces pombe GN=ubc16 PE=2 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 2.153e-32
Identity = 69/148 (46.62%), Postives = 93/148 (62.84%), Query Frame = 2
Query:   11 LFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMYTRLAAMPK 454
            L KEY   Q    +   +     D ++F W A+I+GP++TPYEGG + L   V E YP+ PP V F TKI HPN+ +  GE+C+DILK  WSPAW+LQS C AII+L+++ +  SPLN D+  LLR+GD   + S+ R  T L A  K
Sbjct:    8 LHKEYASFQAGDISGLLLLKPVTDVDMFHWKAVIEGPTETPYEGGQWVLDIHVHEGYPISPPSVYFQTKIVHPNISWTNGEVCMDILKTHWSPAWSLQSACLAIISLLSNYDASSPLNVDAAKLLRTGDKTAYNSLVRCTTYLYAKGK 155          
BLAST of FC872390 vs. ExPASy Swiss-Prot
Match: UBCX_PICAN (Ubiquitin-conjugating enzyme E2-21 kDa OS=Pichia angusta GN=PEX4 PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.306e-29
Identity = 65/169 (38.46%), Postives = 97/169 (57.40%), Query Frame = 2
Query:   11 LFKEYKEVQREKSADPD-------IQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLT----------------------KIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMY 430
            L KEY+ V++E +           + L   +  +F+W+A+I+GP ++P+E  +++L   +P  YPL PP+++F+                       K+ HPNV+FKTGEICLDIL+  WSPAWTLQS   AI+ L+A+PEP SPLN D  NLL+  D   ++ +   Y
Sbjct:    8 LLKEYRAVKKELTEKRSPIHDTGIVDLHPLEDGLFRWSAVIRGPDQSPFEDALWKLEIDIPTNYPLDPPKIKFVVFGEEKIRQLQRKTSSGARKVCYKMPHPNVNFKTGEICLDILQQKWSPAWTLQSALVAIVVLLANPEPLSPLNIDMANLLKCDDTTAYKDLVHYY 176          
BLAST of FC872390 vs. ExPASy Swiss-Prot
Match: UBE2N_RAT (Ubiquitin-conjugating enzyme E2 N OS=Rattus norvegicus GN=Ube2n PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.710e-26
Identity = 64/142 (45.07%), Postives = 91/142 (64.08%), Query Frame = 2
Query:   26 KEVQREKSAD-PDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMYTRLAAM 448
            KE QR  +   P I+   D+SN   +  +I GP  +P+EGG F+L   +PE+YP+  P+VRF+TKI+HPNV  K G ICLDILK+ WSPA  +++V  +I AL++ P PD PL  D     +S + +  ++ AR +TRL AM
Sbjct:   10 KETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVD-KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKSNEAQAIET-ARAWTRLYAM 149          
BLAST of FC872390 vs. ExPASy Swiss-Prot
Match: UBC10_ARATH (Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis thaliana GN=UBC10 PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.710e-26
Identity = 60/146 (41.10%), Postives = 88/146 (60.27%), Query Frame = 2
Query:   11 LFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMYTRLAAM 448
            + KE K++Q++         V +D  +F W A I GPS++PY GGVF +    P  YP +PP+V F TK+FHPN++   G ICLDILK  WSPA T+  V  +I +L+  P PD PL  +  ++ ++ D   ++S AR +T+  AM
Sbjct:    6 ILKELKDLQKDPPTSCSAGPVAED--MFHWQATIMGPSESPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNIN-SNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKT-DKNKYESTARSWTQKYAM 147          
BLAST of FC872390 vs. ExPASy Swiss-Prot
Match: UBE2N_MACFA (Ubiquitin-conjugating enzyme E2 N OS=Macaca fascicularis GN=UBE2N PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 8.763e-26
Identity = 63/142 (44.37%), Postives = 92/142 (64.79%), Query Frame = 2
Query:   26 KEVQREKSAD-PDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMYTRLAAM 448
            KE QR  +   P I+   D+SN   +  +I GP  +P+EGG F+L   +PE+YP+  P+VRF+TKI+HPNV  K+G ICLDILK+ WSPA  +++V  +I AL++ P PD PL  D     ++ + +  ++ AR +TRL AM
Sbjct:   10 KETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVD-KSGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIET-ARAWTRLYAM 149          
BLAST of FC872390 vs. ExPASy Swiss-Prot
Match: UBC9_ARATH (SUMO-conjugating enzyme UBC9 OS=Arabidopsis thaliana GN=UBC9 PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 8.763e-26
Identity = 60/146 (41.10%), Postives = 87/146 (59.59%), Query Frame = 2
Query:   11 LFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMYTRLAAM 448
            + KE K++Q++         V +D  +F W A I GPS +PY GGVF +    P  YP +PP+V F TK+FHPN++   G ICLDILK  WSPA T+  V  +I +L+  P PD PL  +  ++ ++ D   ++S AR +T+  AM
Sbjct:    6 ILKELKDLQKDPPTSCSAGPVAED--MFHWQATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNIN-SNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKT-DKNKYESTARTWTQKYAM 147          
BLAST of FC872390 vs. ExPASy Swiss-Prot
Match: UBC28_ARATH (Ubiquitin carrier protein E2 28 OS=Arabidopsis thaliana GN=UBC28 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 8.763e-26
Identity = 61/146 (41.78%), Postives = 87/146 (59.59%), Query Frame = 2
Query:   11 LFKEYKEVQREKSADPDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMYTRLAAM 448
            + KE K++Q++         V +D  +F W A I GPS +PY GGVF +    P  YP +PP+V F TK+FHPNV+   G ICLDILK  WSPA T+  V  +I +L+  P PD PL  +  ++ ++ D   ++S AR +T+  AM
Sbjct:    6 ILKELKDLQKDPPTSCSAGPVAED--MFHWQATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNVN-SNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKT-DRAKYESTARSWTQKYAM 147          
BLAST of FC872390 vs. ExPASy Swiss-Prot
Match: UBE2N_PONAB (Ubiquitin-conjugating enzyme E2 N OS=Pongo abelii GN=UBE2N PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.495e-25
Identity = 63/142 (44.37%), Postives = 91/142 (64.08%), Query Frame = 2
Query:   26 KEVQREKSAD-PDIQLVCDDSNIFKWTALIKGPSKTPYEGGVFQLAFAVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDIRGFQSMARMYTRLAAM 448
            KE QR  +   P I+   D+SN   +  +I GP  +P+EGG F+L   +PE+YP+  P+VRF+TKI+HPNV  K G ICLDILK+ WSPA  +++V  +I AL++ P PD PL  D     ++ + +  ++ AR +TRL AM
Sbjct:   10 KETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVD-KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIET-ARAWTRLYAM 149          
The following BLAST results are available for this feature:
BLAST of FC872390 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 239
Match NameE-valueIdentityDescription
UBC21_ARATH2.509e-8194.00Probable ubiquitin carrier protein E2 21 OS=Arabid... [more]
UBCX_DICDI3.307e-4961.54Ubiquitin-conjugating enzyme E2 pex4 OS=Dictyostel... [more]
UBC16_SCHPO2.153e-3246.62Ubiquitin-conjugating enzyme E2 16 OS=Schizosaccha... [more]
UBCX_PICAN1.306e-2938.46Ubiquitin-conjugating enzyme E2-21 kDa OS=Pichia a... [more]
UBE2N_RAT6.710e-2645.07Ubiquitin-conjugating enzyme E2 N OS=Rattus norveg... [more]
UBC10_ARATH6.710e-2641.10Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis ... [more]
UBE2N_MACFA8.763e-2644.37Ubiquitin-conjugating enzyme E2 N OS=Macaca fascic... [more]
UBC9_ARATH8.763e-2641.10SUMO-conjugating enzyme UBC9 OS=Arabidopsis thalia... [more]
UBC28_ARATH8.763e-2641.78Ubiquitin carrier protein E2 28 OS=Arabidopsis tha... [more]
UBE2N_PONAB1.495e-2544.37Ubiquitin-conjugating enzyme E2 N OS=Pongo abelii ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1BC02ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB1BC02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872390 ID=FC872390; Name=FC872390; organism=Citrus clementina; type=EST; length=793bp
CGGGCGGGGGTTATTCAAGGAGTACAAAGAAGTGCAGCGAGAGAAATCAG
CTGACCCAGACATTCAATTAGTTTGTGATGATTCCAACATATTTAAATGG
ACTGCTCTTATTAAGGGACCATCAAAGACTCCTTATGAGGGTGGGGTATT
CCAGCTTGCTTTTGCTGTTCCTGAGCAATATCCTCTGCAACCTCCACAAG
TGCGGTTTTTAACAAAAATATTCCATCCAAATGTGCATTTTAAGACAGGA
GAGATATGCCTTGACATATTGAAGAACGCATGGAGCCCAGCTTGGACGCT
TCAGTCTGTTTGTAGGGCTATAATCGCTTTGATGGCACATCCAGAACCTG
ATAGTCCACTAAATTGTGATTCAGGCAACCTTTTACGCTCAGGTGATATA
AGAGGATTTCAATCCATGGCAAGGATGTACACTAGACTTGCGGCAATGCC
AAAGAAGGGGTGATTGACGAAGCCCTATTCAGTGTTATAAATTATGAGAG
CGTGATGTTATATAATTGTGACTGAACAACTATGGTTCTGTGGCTACATC
CAGAGATTTTTTCTTTTTTTTTAAAAAAGCTTTTTGAACTCTAATTTTCT
ATTTTCATTGCGTAAAATTGGAATGCAGAAATTGTCTTCAATATGGTCGA
CCGTGCCAAGCACTATAATGGGACTTCTGCTGGGTTATTGTGTAAAAATT
ATAACATTTGGTCCTGTACAATTCATCATGTGAAAATGAAACGTTAGGTT
ATTATTTAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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