FC872399

Overview
NameFC872399
Unique NameFC872399
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length855
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13262 contig Ccv1_Contig13262:653..1507. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872399 vs. ExPASy Swiss-Prot
Match: BH128_ARATH (Transcription factor bHLH128 OS=Arabidopsis thaliana GN=BHLH128 PE=1 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.935e-54
Identity = 119/189 (62.96%), Postives = 142/189 (75.13%), Query Frame = 2
Query:   65 KSQLSSTGQDSLSQISEESENGIDGVSSGSGRQNATHSYSTASFGM---DSWENGT-SIVFSAP-PSKRTKTLDGDIFNCLNALDSQFTMPQTSLEMATVDNLLNIPEDSVPCKIRAKRGCATHPRSIAERERRTRISRKLKKLQDLVPNMDKQTSYSDMLDLAVQHIKGLQNQVENLHKDLEHCTCGC 616
            KSQLS T  DSL++I+E +E     V  GSG     HS+S ASFG    DSW++G+ SI F+   PSKR+K +D  +F       SQ+++P  +  M  +DN + +PEDSVPCKIRAKRGCATHPRSIAERERRTRIS KLKKLQDLVPNMDKQTSYSDMLDLAVQHIKGLQ+Q++NL KD E+CTCGC
Sbjct:  185 KSQLSFTNHDSLARINEVNETP---VHDGSG-----HSFSAASFGAATTDSWDDGSGSIGFTVTRPSKRSKDMDSGLF-------SQYSLPSDT-SMNYMDNFMQLPEDSVPCKIRAKRGCATHPRSIAERERRTRISGKLKKLQDLVPNMDKQTSYSDMLDLAVQHIKGLQHQLQNLKKDQENCTCGC 357          
BLAST of FC872399 vs. ExPASy Swiss-Prot
Match: BH129_ARATH (Transcription factor bHLH129 OS=Arabidopsis thaliana GN=BHLH129 PE=2 SV=2)

HSP 1 Score: 172.555 bits (436), Expect = 2.577e-42
Identity = 101/178 (56.74%), Postives = 130/178 (73.03%), Query Frame = 2
Query:   68 SQLSSTGQDSLSQISEESENGIDGVS---SGSGRQNATHSYSTASFG---MDSWENGTS-IVFSAP-PSKRTKTLDGDIFNCLNALDSQFTMPQTSLEMATVDNLLNIPEDSVPCKIRAKRGCATHPRSIAERERRTRISRKLKKLQDLVPNMDKQTSYSDMLDLAVQHIKGLQNQVE 577
            S+L S  + S    S +  N +  +S   + +  +N   S S+ SFG    ++W+N +S I F+   P KR+K  + D F     L++Q++MPQT+LEMAT++NL+NIPEDSVPC+ RAKRG ATHPRSIAERERRTRIS KLKKLQ+LVPNMDKQTSY+DMLDLAV+HIKGLQ+QVE
Sbjct:  124 SRLKSELRFSSGSSSHQEHNSLPRISEVEAAAAARNGVAS-SSMSFGNNRTNNWDNSSSHISFTIDQPGKRSK--NSDFFT----LETQYSMPQTTLEMATMENLMNIPEDSVPCRARAKRGFATHPRSIAERERRTRISGKLKKLQELVPNMDKQTSYADMLDLAVEHIKGLQHQVE 294          
BLAST of FC872399 vs. ExPASy Swiss-Prot
Match: BH130_ARATH (Transcription factor bHLH130 OS=Arabidopsis thaliana GN=BHLH130 PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.263e-30
Identity = 73/152 (48.03%), Postives = 98/152 (64.47%), Query Frame = 2
Query:  191 SFGMDSWENGTSIVFSAPPSKRTKTLDGDIF---------NCLNALDSQFTMPQ---TSLEMATVDNLLNIPEDSVPCKIRAKRGCATHPRSIAERERRTRISRKLKKLQDLVPNMDKQTSYSDMLDLAVQHIKGLQNQVENLHKDLEHCTC 610
            +F    W + +S + +    KR    DG +F         N +  L    ++P+   T+ +M +VD  L + +DSVPCKIRAKRGCATHPRSIAER RRTRIS +++KLQ+LVPNMDKQT+ SDMLDLAV +IK LQ Q + L+ +  +C C
Sbjct:  201 NFPYSHWNDPSSFIDNLSSLKREAEDDGKLFLGAQNGESGNRMQLLSHHLSLPKSSSTASDMVSVDKYLQL-QDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTSDMLDLAVDYIKDLQRQYKILNDNRANCKC 351          
BLAST of FC872399 vs. ExPASy Swiss-Prot
Match: BH122_ARATH (Transcription factor bHLH122 OS=Arabidopsis thaliana GN=BHLH122 PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.059e-27
Identity = 71/156 (45.51%), Postives = 94/156 (60.26%), Query Frame = 2
Query:  143 SSGSGRQNATHSYSTASFGMDSWENGTSIVFSAPPSKRTKTLDGDIFNCLNALDSQFTMPQTSLEMATVDNLLNIPEDSVPCKIRAKRGCATHPRSIAERERRTRISRKLKKLQDLVPNMDKQTSYSDMLDLAVQHIKGLQNQVENLHKDLEHCTC 610
            + GS     T    T S G+D +                KT D D  +    L    ++P++   ++ ++ LL+   DS+PCKIRAKRGCATHPRSIAER RRT+IS +++KLQDLVPNMD QT+ +DMLDLAVQ+IK LQ QV+ L +    C C
Sbjct:  243 NEGSASSKLTALARTQSGGLDQY----------------KTKDEDSASRRPPLAHHMSLPKS---LSDIEQLLS---DSIPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDTQTNTADMLDLAVQYIKDLQEQVKALEESRARCRC 376          
BLAST of FC872399 vs. ExPASy Swiss-Prot
Match: BH080_ARATH (Transcription factor bHLH80 OS=Arabidopsis thaliana GN=BHLH80 PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.382e-26
Identity = 64/153 (41.83%), Postives = 100/153 (65.36%), Query Frame = 2
Query:  152 SGRQNATHSYSTASFGMDSWENGTSIVFSAPPSKRTKTLDGDIFNCLNALDSQFTMPQTSLEMATVDNLLNIPEDSVPCKIRAKRGCATHPRSIAERERRTRISRKLKKLQDLVPNMDKQTSYSDMLDLAVQHIKGLQNQVENLHKDLEHCTC 610
            SG  + T  Y + +FG+ +  +  S      P+KR++ ++    + L   + Q +   + +    +D +    EDSVPC++RAKRGCATHPRSIAER RRTRIS ++++LQ+LVPNMDKQT+ +DML+ AV+++K LQ+Q++ L +  + C C
Sbjct:  107 SGSGSGTDGYFS-NFGIPANYDYLSTNVDISPTKRSRDMETQFSSQLK--EEQMSGGISGMMDMNMDKIF---EDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRRLQELVPNMDKQTNTADMLEEAVEYVKALQSQIQELTEQQKRCKC 253          
BLAST of FC872399 vs. ExPASy Swiss-Prot
Match: BH081_ARATH (Transcription factor bHLH81 OS=Arabidopsis thaliana GN=BHLH81 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.863e-25
Identity = 60/129 (46.51%), Postives = 90/129 (69.77%), Query Frame = 2
Query:  239 APPSKRTKTLDG-----DIFNCLNALDSQFTMPQTSLEMATVDNLLNIPEDSVPCKIRAKRGCATHPRSIAERERRTRISRKLKKLQDLVPNMDKQTSYSDMLDLAVQHIKGLQNQVENLHKDLEHCTC 610
            +P SKR++ ++      +  + +    S   +P     M+ + N+ N+ EDSV  ++RAKRGCATHPRSIAER RRTRIS +++KLQ+LVPNMDKQT+ +DML+ AV+++K LQ Q++ L ++ + CTC
Sbjct:  129 SPGSKRSREMEALFSSPEFTSQMKGEQSSGQVPTGVSSMSDM-NMENLMEDSVAFRVRAKRGCATHPRSIAERVRRTRISDRIRKLQELVPNMDKQTNTADMLEEAVEYVKVLQRQIQELTEEQKRCTC 256          
BLAST of FC872399 vs. ExPASy Swiss-Prot
Match: BH066_ARATH (Transcription factor bHLH66 OS=Arabidopsis thaliana GN=BHLH66 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.552e-13
Identity = 51/123 (41.46%), Postives = 69/123 (56.10%), Query Frame = 2
Query:  215 NGTSIVFSAPPSKRTKTLDGDIFNCLNALDSQFTMPQTSLEMATVDNLLNIPEDSVPCKIRAKRGCATHPRSIAERERRTRISRKLKKLQDLVPNMDKQTSYSDMLDLAVQHIKGLQNQVENL 583
            NG S+  S P  +  +   G + N      +Q T PQ S   AT   +   P+     KIRA+RG AT P SIAER RR RI+ ++K LQ+LVPN +K T  + MLD  + ++K LQ QV+ L
Sbjct:   82 NGFSVAGSLPNFQIPQGSGGGLMNQQGQTQTQ-TQPQASASTATGGTVAAPPQSRT--KIRARRGQATDPHSIAERLRRERIAERMKALQELVPNGNK-TDKASMLDEIIDYVKFLQLQVKVL 200          
BLAST of FC872399 vs. ExPASy Swiss-Prot
Match: BH076_ARATH (Transcription factor bHLH76 OS=Arabidopsis thaliana GN=BHLH76 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.241e-11
Identity = 56/170 (32.94%), Postives = 83/170 (48.82%), Query Frame = 2
Query:   95 SLSQISEESENGIDGVSSGSGRQNATHSYSTASFGMDSWENGTSIVFSAPPSKRTKTLDGDIFNCLNALDSQFTMPQTSLEMATVDNLLNIPEDSVP---CKIRAKRGCATHPRSIAERERRTRISRKLKKLQDLVPNMDKQTSYSDMLDLAVQHIKGLQNQVENLHKDL 595
            S++ +SE+S++     S G+G  +A     T+S G  S              K+ K +  D   C    D +    Q+    A   N    P DS+      +RA+RG AT+  S+AER RR +IS ++K LQDLVP  DK T  + MLD  + +++ LQ Q+E L   L
Sbjct:  144 SINNVSEDSQS-----SGGNGHDDAKCG-QTSSKGFSS--------------KKRKRIGKD---CEEEEDKKQKDEQSPTSNANKTNSEKQPSDSLKDGYIHMRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCDKVTGKAVMLDEIINYVQSLQCQIEFLSMKL 290          
The following BLAST results are available for this feature:
BLAST of FC872399 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
BH128_ARATH2.935e-5462.96Transcription factor bHLH128 OS=Arabidopsis thalia... [more]
BH129_ARATH2.577e-4256.74Transcription factor bHLH129 OS=Arabidopsis thalia... [more]
BH130_ARATH2.263e-3048.03Transcription factor bHLH130 OS=Arabidopsis thalia... [more]
BH122_ARATH3.059e-2745.51Transcription factor bHLH122 OS=Arabidopsis thalia... [more]
BH080_ARATH3.382e-2641.83Transcription factor bHLH80 OS=Arabidopsis thalian... [more]
BH081_ARATH2.863e-2546.51Transcription factor bHLH81 OS=Arabidopsis thalian... [more]
BH066_ARATH9.552e-1341.46Transcription factor bHLH66 OS=Arabidopsis thalian... [more]
BH076_ARATH5.241e-1132.94Transcription factor bHLH76 OS=Arabidopsis thalian... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAB1BC12ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB1BC12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872399 ID=FC872399; Name=FC872399; organism=Citrus clementina; type=EST; length=855bp
GGGGGAAACCGGAAACTATAACTCACAAGGCAGATCTAGTGGTGGCCTCG
GAGTGTCGAGGTTAAAGTCTCAATTAAGTTCCACAGGACAAGATTCTCTT
TCCCAGATCTCTGAAGAAAGTGAGAATGGTATTGATGGAGTTAGTTCTGG
TAGTGGCCGGCAAAATGCCACACATTCTTATTCGACTGCTAGTTTTGGGA
TGGACTCTTGGGAGAATGGAACTTCCATTGTGTTTTCTGCACCACCAAGT
AAAAGAACTAAAACCTTGGATGGAGACATTTTTAATTGTCTCAATGCTTT
GGACTCTCAGTTTACCATGCCGCAAACATCTCTTGAAATGGCTACAGTGG
ATAATTTATTAAATATCCCTGAAGACTCTGTCCCTTGCAAAATTCGTGCT
AAACGTGGCTGTGCTACTCATCCCCGAAGCATCGCTGAAAGGGAGAGAAG
AACCAGAATAAGCAGGAAATTGAAGAAATTACAAGACCTTGTTCCAAACA
TGGACAAGCAAACGAGTTATTCTGATATGTTAGACTTGGCAGTGCAGCAT
ATCAAAGGCCTTCAAAATCAAGTGGAGAATCTCCACAAAGATCTTGAGCA
TTGCACGTGTGGATGCAAGCCAACCTCTTGATCTTTGCTGTATCAAAAGA
AAGGATTGAAACAATAATGTTGTAGAAACTGGGATACCAAGCATTTGCAG
GCCTAATTTTGCACTCTTACCAACTATTTAACTTGGAAAGGAAAAGTGTA
AGTAAGAAGAAAATTTCAGTTGAAAAAAATTGTATATAACCAAGTAAGTT
ATTCGTTTCCATTTTTGACCTTTATNCATCTGGTACGGGATCACTTGCTT
TGTAT
back to top