FC872409

Overview
NameFC872409
Unique NameFC872409
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length861
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9943 contig Ccv1_Contig9943:1..861. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872409 vs. ExPASy Swiss-Prot
Match: GLU2B_BOVIN (Glucosidase 2 subunit beta OS=Bos taurus GN=PRKCSH PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.837e-26
Identity = 67/204 (32.84%), Postives = 99/204 (48.53%), Query Frame = 2
Query:  275 PYREEDHDYTSTSYKTDVDDDLDMSEMTTPSS---PSWLEKIQQTVRNILQAVNLFQTPVDKSDAARVRKEYDESSDKLSKIQSRISSLTQKLKHEFGPEKEFYSFYGHCFESKQNKYVYKVCPYKKATQEE--GHSTTRLGSWDKF----EDSYHIMLFSNGDKCWNGPDRSMKVRLRCGLKNEVTDVDEPSRCEYVALLYTP 859
            P  EED D      + D D++ + S+   P     P+   +               QT    + A   R +++E+   L  ++  I +L Q++  +FGP  EF   Y  C+E   N+YVY++CP+K  +Q+   G S T LG+W  +     D +  M +  G  CW GP+RS  VRL CG +  VT   EPSRCEY+  L TP
Sbjct:  311 PTEEEDEDEEDEETEEDEDEEDEDSQGEQPKDAPPPAPAPQTASPTEEDRMPPYDEQTQAFINAAQEARNKFEEAERSLKDMEESIRNLEQEISFDFGPNGEFAYLYSQCYELTTNEYVYRLCPFKLVSQKPKLGGSPTSLGTWGSWAGPDHDKFSAMKYEQGTGCWQGPNRSTTVRLLCGKETVVTSTTEPSRCEYLMELMTP 514          
BLAST of FC872409 vs. ExPASy Swiss-Prot
Match: GLU2B_MOUSE (Glucosidase 2 subunit beta OS=Mus musculus GN=Prkcsh PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.218e-25
Identity = 56/140 (40.00%), Postives = 79/140 (56.43%), Query Frame = 2
Query:  458 AARVRKEYDESSDKLSKIQSRISSLTQKLKHEFGPEKEFYSFYGHCFESKQNKYVYKVCPYKKATQEEGH--STTRLGSWDKF----EDSYHIMLFSNGDKCWNGPDRSMKVRLRCGLKNEVTDVDEPSRCEYVALLYTP 859
            A   R +++E    L +++  I SL Q++  +FGP  EF   Y  C+E   N+YVY++CP+K  +Q+  H  S T LG+W  +     D +  M +  G  CW GP+RS  VRL CG +  VT   EPSRCEY+  L TP
Sbjct:  363 AQEARSKFEEVERSLKEMEESIRSLEQEISFDFGPSGEFAYLYSQCYELTTNEYVYRLCPFKLVSQKPKHGGSPTSLGTWGSWAGPDHDKFSAMKYEQGTGCWQGPNRSTTVRLLCGKETVVTSTTEPSRCEYLMELMTP 502          
BLAST of FC872409 vs. ExPASy Swiss-Prot
Match: GLU2B_HUMAN (Glucosidase 2 subunit beta OS=Homo sapiens GN=PRKCSH PE=1 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 4.941e-25
Identity = 57/148 (38.51%), Postives = 81/148 (54.73%), Query Frame = 2
Query:  434 QTPVDKSDAARVRKEYDESSDKLSKIQSRISSLTQKLKHEFGPEKEFYSFYGHCFESKQNKYVYKVCPYKKATQEE--GHSTTRLGSWDKF----EDSYHIMLFSNGDKCWNGPDRSMKVRLRCGLKNEVTDVDEPSRCEYVALLYTP 859
            QT      A   R +++E+   L  ++  I +L Q++  +FGP  EF   Y  C+E   N+YVY++CP+K  +Q+   G S T LG+W  +     D +  M +  G  CW GP+RS  VRL CG +  VT   EPSRCEY+  L TP
Sbjct:  362 QTQAFIDAAQEARNKFEEAERSLKDMEESIRNLEQEISFDFGPNGEFAYLYSQCYELTTNEYVYRLCPFKLVSQKPKLGGSPTSLGTWGSWIGPDHDKFSAMKYEQGTGCWQGPNRSTTVRLLCGKETMVTSTTEPSRCEYLMELMTP 509          
The following BLAST results are available for this feature:
BLAST of FC872409 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
GLU2B_BOVIN5.837e-2632.84Glucosidase 2 subunit beta OS=Bos taurus GN=PRKCSH... [more]
GLU2B_MOUSE2.218e-2540.00Glucosidase 2 subunit beta OS=Mus musculus GN=Prkc... [more]
GLU2B_HUMAN4.941e-2538.51Glucosidase 2 subunit beta OS=Homo sapiens GN=PRKC... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAB1BD12ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB1BD12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872409 ID=FC872409; Name=FC872409; organism=Citrus clementina; type=EST; length=861bp
GGGGAAGAACTTGGAGAATGGTGTATCTGAAAATACCGAGGAGTTATCAA
GGGAAGAGTTGGGTCGCCTTGTTGCTTCTCGTTGGACGGGAGAAAAGACT
GAGAAGCAATCTGGGGAAGGTGGTGCAATAGCAAATGATGATCAAGGTGA
AGATGTGCCAGAGTACAACCATGATGATGAAGAGGATAGATATGCTACAG
ATACTGATGATGATTCAGAAAGGTATGACACTGAAAAGTATGATGACAAT
GATGTGGAAGATGATATAGATGAACCTTATAGAGAGGAGGATCATGATTA
TACCAGTACTTCATACAAAACAGATGTAGATGACGACTTGGATATGTCAG
AGATGACAACTCCAAGTAGTCCATCTTGGTTGGAGAAGATACAACAAACA
GTACGGAATATTTTGCAGGCTGTTAATTTGTTCCAAACGCCAGTAGACAA
ATCAGACGCTGCTCGTGTCCGCAAGGAGTATGATGAGTCTAGCGACAAGT
TGTCTAAAATACAGTCGAGGATATCGAGTTTGACACAAAAGCTTAAGCAT
GAATTTGGGCCAGAGAAGGAGTTCTACTCATTCTACGGTCATTGTTTTGA
GAGCAAGCAGAACAAGTATGTTTACAAAGTCTGTCCGTACAAAAAAGCTA
CCCAAGAGGAGGGCCACTCAACGACTCGTCTGGGGAGCTGGGACAAATTC
GAGGACTCATACCACATCATGCTATTTTCAAATGGTGATAAGTGTTGGAA
TGGGCCTGATAGAAGTATGAAGGTCCGGCTAAGATGTGGGTTGAAAAATG
AGGTTACTGATGTTGATGAACCAAGCCGCTGCGAATATGTCGCATTATTG
TATACCCCTGC
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