FC872416

Overview
NameFC872416
Unique NameFC872416
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length905
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1044 contig Ccv1_Contig1044:1..902. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872416 vs. ExPASy Swiss-Prot
Match: SERA_ARCFU (D-3-phosphoglycerate dehydrogenase OS=Archaeoglobus fulgidus GN=serA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 3.053e-20
Identity = 74/229 (32.31%), Postives = 115/229 (50.22%), Query Frame = 1
Query:  241 IANYHLCVVKTM-RLDSNVISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAI-----EQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFKFASMADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLD----YEAI 897
            +  Y   VV++  ++D+ VI  A  +K+I + GVG++ +DINAAT+ GI V   PG   GN  S AE  I LML   RK  +   ++     E+KK     G  L GKT  ++G G +G E+AKR +   + ++A     +       ++  + VK    D L+             + +DV+   +   K+T G++ K     MK G ++VN ARGG++D    YEAI
Sbjct:   39 VPKYEAIVVRSQTKVDAEVIQAAKNLKIIGRAGVGVDNIDINAATQRGIVVVNAPG---GNTISTAEHAIALMLAAARKIPQADRSVKEGKWERKKF---MGIELRGKTAGVIGLGRVGFEVAKRCKALEMNVLAYDPFVSKE-----RAEQIGVKLVDFDTLL-------------ASSDVITVHVPRTKETIGLIGKGQFEKMKDGVIVVNAARGGIVDEAALYEAI 243          
BLAST of FC872416 vs. ExPASy Swiss-Prot
Match: SERA_BACSU (D-3-phosphoglycerate dehydrogenase OS=Bacillus subtilis GN=serA PE=3 SV=3)

HSP 1 Score: 96.2857 bits (238), Expect = 2.585e-19
Identity = 68/243 (27.98%), Postives = 121/243 (49.79%), Query Frame = 1
Query:  193 PSIQVDVIPI-----SDAPDVIANYHLCVVKTM-RLDSNVISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLG--VPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFKFASMADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAI 897
            P I+ D I I     +DA D +  +   +V++  ++  ++ ++   +K++ + GVG++ +DI+ AT+ G+ V   P    GN  S AE T  ++  L+R   +  ++++ ++       G  L GKT+ I+G G IG E+A+R R FG+ +         H      +   A K G+     +E             AD++     L K+T G++NK  ++  KKG  L+N ARGG++D  A+
Sbjct:   17 PLIESDFIEIVQKNVADAEDELHTFDALLVRSATKVTEDLFNKMTSLKIVGRAGVGVDNIDIDEATKHGVIVINAPN---GNTISTAEHTFAMISSLMRHIPQANISVKSREWNRTAYVGSELYGKTLGIVGLGRIGSEIAQRARAFGMTV---------HVFDPFLTEERAKKIGVNSRTFEE---------VLESADIITVHTPLTKETKGLLNKETIAKTKKGVRLINCARGGIIDEAAL 238          
BLAST of FC872416 vs. ExPASy Swiss-Prot
Match: GYAR_PYRAB (Glyoxylate reductase OS=Pyrococcus abyssi GN=gyaR PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.376e-19
Identity = 65/220 (29.55%), Postives = 112/220 (50.91%), Query Frame = 1
Query:  256 LCVVKTMRLDSNVISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP------TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFKFASMADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAI 897
            L  + + R+D  V  RA +++++  + VG + +D+  AT+ GI V   PG +T   A  A   +      L K ++   + E KK GV        G  + GKT+ I+GFG IG  +AKR R F ++I+     + S ++       L  +   +D+L+ E             +D VV  + LNK+T  ++N+  L  MK+ ++L+N+ARG ++D +A+
Sbjct:   50 LVTMLSERIDREVFERAPRLRIVANYAVGYDNIDVEEATKRGIYVTNTPGVLTDATADLAFALLLATARHLVKGDKFTRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGFGRIGQAIAKRARGFDMRIL-----YYSRTRKPEVEKELNAEFKPLDELLRE-------------SDFVVLAVPLNKETYHMINEERLKMMKRTAILINVARGKVIDTKAL 251          
BLAST of FC872416 vs. ExPASy Swiss-Prot
Match: SERA_MYCLE (D-3-phosphoglycerate dehydrogenase OS=Mycobacterium leprae GN=serA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.283e-18
Identity = 68/217 (31.34%), Postives = 110/217 (50.69%), Query Frame = 1
Query:  256 LCVVKTMRLDSNVISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQK--KLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFKFASMADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIA 900
            L V     +D+ V++ A ++K++ + GVGL+ VD++AAT  G+ V   P   T N  S AE  + L+L   R+  E   ++     K    +G  + GKTV ++G G IG  +A R+  FG  +IA     A       +++ L ++    DDL+             + AD +   L    +TAG+++K  L+  K G ++VN ARGGL+D  A+A
Sbjct:   47 LLVRSATTVDAEVLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAP---TSNIHSAAEHALALLLAASRQIAEADASLRAHIWKRSSFSGTEIFGKTVGVVGLGRIGQLVAARIAAFGAHVIAYDPYVAP-----ARAAQLGIELMSFDDLL-------------ARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEVALA 242          
BLAST of FC872416 vs. ExPASy Swiss-Prot
Match: GYAR_PYRKO (Glyoxylate reductase OS=Pyrococcus kodakaraensis GN=gyaR PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.675e-18
Identity = 65/220 (29.55%), Postives = 110/220 (50.00%), Query Frame = 1
Query:  256 LCVVKTMRLDSNVISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP------TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFKFASMADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAI 897
            L  + + R+DS V   A +++++  + VG + +D+  ATR GI V   P  +T   A  A   +      L + +    + E K+ G+        G  + GKT+ I+GFG IG  +A+R R FG++I+   RS    ++       L  +   ++DL+ E             +D VV  + L K+T  ++N+  L  MKK ++LVNIARG ++D +A+
Sbjct:   49 LVTMLSERIDSEVFDAAPRLRIVANYAVGYDNIDVEEATRRGIYVTNTPDVLTDATADFAWTLLLATARRLIEADHFTRSGEWKRRGIAWHPRWFLGYDVYGKTIGIVGFGRIGQAVARRARGFGMRILYYSRSRKPEAE-----KELGAEFRSLEDLLRE-------------SDFVVLAVPLTKETQYMINEERLRLMKKTAILVNIARGKVVDTKAL 250          
BLAST of FC872416 vs. ExPASy Swiss-Prot
Match: SERA_MYCTU (D-3-phosphoglycerate dehydrogenase OS=Mycobacterium tuberculosis GN=serA PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.732e-18
Identity = 65/217 (29.95%), Postives = 112/217 (51.61%), Query Frame = 1
Query:  256 LCVVKTMRLDSNVISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQK--KLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFKFASMADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIA 900
            L V     +D+ V++ A ++K++ + GVGL+ VD++AAT  G+ V   P   T N  S AE  + L+L   R+      ++ +   K    +G  + GKTV ++G G IG  +A+R+  FG  ++A     +       +++ L ++   +DDL+             + AD +   L    +TAG+++K  L+  K G ++VN ARGGL+D  A+A
Sbjct:   47 LLVRSATTVDAEVLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAP---TSNIHSAAEHALALLLAASRQIPAADASLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSP-----ARAAQLGIELLSLDDLL-------------ARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALA 242          
BLAST of FC872416 vs. ExPASy Swiss-Prot
Match: SERA_MYCBO (D-3-phosphoglycerate dehydrogenase OS=Mycobacterium bovis GN=serA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.732e-18
Identity = 65/217 (29.95%), Postives = 112/217 (51.61%), Query Frame = 1
Query:  256 LCVVKTMRLDSNVISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQK--KLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFKFASMADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIA 900
            L V     +D+ V++ A ++K++ + GVGL+ VD++AAT  G+ V   P   T N  S AE  + L+L   R+      ++ +   K    +G  + GKTV ++G G IG  +A+R+  FG  ++A     +       +++ L ++   +DDL+             + AD +   L    +TAG+++K  L+  K G ++VN ARGGL+D  A+A
Sbjct:   47 LLVRSATTVDAEVLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAP---TSNIHSAAEHALALLLAASRQIPAADASLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSP-----ARAAQLGIELLSLDDLL-------------ARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALA 242          
BLAST of FC872416 vs. ExPASy Swiss-Prot
Match: GYAR_THEPD (Glyoxylate reductase OS=Thermofilum pendens (strain Hrk 5) GN=gyaR PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.875e-18
Identity = 69/222 (31.08%), Postives = 108/222 (48.65%), Query Frame = 1
Query:  256 LCVVKTMRLDSNVISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP------TGETLLGKTVFILGFGNIGVELAKRLRPFGVKII--ATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFKFASMADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAI 897
            LC++ T ++D+ V+  A  +K+I  + VG + +DI  AT+ GI V   PG +T    + AE T+ L+L + R+  E    I   +   P      TG  L GKT+ ++G G IGV  AKRL  F VKI+    +R W   + +                         D+      +D+V   + L K+T  ++N+  L  MKK + L+N ARG ++D EA+
Sbjct:   52 LCLL-TDKIDAEVMDAAPNLKVISTYSVGFDHIDIPEATKRGIYVTHTPGVLTD---AVAEFTVGLILAVTRRIVEADKIIRTGQWDKPWNPYFLTGPELKGKTIGLVGLGRIGVATAKRLSSFDVKILYYDIERRWDVETVIPNME-------------------FTDLDTLLEKSDIVSIHVPLTKETYHLINEERLRKMKKTAYLINTARGPVVDTEAL 250          
BLAST of FC872416 vs. ExPASy Swiss-Prot
Match: GYAR_THEON (Glyoxylate reductase OS=Thermococcus onnurineus (strain NA1) GN=gyaR PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.086e-17
Identity = 62/220 (28.18%), Postives = 110/220 (50.00%), Query Frame = 1
Query:  256 LCVVKTMRLDSNVISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP------TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFKFASMADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAI 897
            L  + + R+D+ V   A ++K++  + VG + +DI  AT+ G+ +   P  +T   A  A + +      L + ++   + E KK GV        G  + G+T+ I+GFG IG  +A+R + FG++I+   R+     +       L  +   +D+L+ E             +D VV  + L K+T  ++N+  L  MK  ++LVNIARG ++D EA+
Sbjct:   49 LVTMLSERIDAEVFDAAPRLKIVANYAVGYDNIDIEEATKMGVYITNTPDVLTNATADMAWVLLLATARRLIEADKFVRSGEWKKRGVAWHPLMFLGYDVYGRTIGIVGFGRIGQAIARRAKGFGMRILYNSRTRKPEVE-----KELGAEFMPLDELLKE-------------SDFVVLVVPLTKETYHMINEERLKLMKPTAILVNIARGKVVDTEAL 250          
BLAST of FC872416 vs. ExPASy Swiss-Prot
Match: SERA_METJA (D-3-phosphoglycerate dehydrogenase OS=Methanocaldococcus jannaschii GN=serA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.160e-17
Identity = 66/216 (30.56%), Postives = 111/216 (51.39%), Query Frame = 1
Query:  256 LCVVKTMRLDSNVISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPT--GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFKFASMADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAI 897
            L V    ++  +VI +A ++K+I + GVG++ +D+ AAT  GI V   P     ++ S AELT+ LML   R   +   ++++ +       G  L GKT+ ++G G IG ++ KR + FG+ II                  +A   G+  +LVD      DI +    AD +   + L  +T  I+ +  ++ MKK +++VN ARGGL+D +A+
Sbjct:   45 LVVRSGTKVTRDVIEKAEKLKVIGRAGVGVDNIDVEAATEKGIIVVNAPD---ASSISVAELTMGLMLAAARNIPQATASLKRGEWDRKRFKGIELYGKTLGVIGLGRIGQQVVKRAKAFGMNIIGYDPYIPKE---------VAESMGV--ELVD------DINELCKRADFITLHVPLTPKTRHIIGREQIALMKKNAIIVNCARGGLIDEKAL 240          
The following BLAST results are available for this feature:
BLAST of FC872416 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
SERA_ARCFU3.053e-2032.31D-3-phosphoglycerate dehydrogenase OS=Archaeoglobu... [more]
SERA_BACSU2.585e-1927.98D-3-phosphoglycerate dehydrogenase OS=Bacillus sub... [more]
GYAR_PYRAB3.376e-1929.55Glyoxylate reductase OS=Pyrococcus abyssi GN=gyaR ... [more]
SERA_MYCLE1.283e-1831.34D-3-phosphoglycerate dehydrogenase OS=Mycobacteriu... [more]
GYAR_PYRKO1.675e-1829.55Glyoxylate reductase OS=Pyrococcus kodakaraensis G... [more]
SERA_MYCTU3.732e-1829.95D-3-phosphoglycerate dehydrogenase OS=Mycobacteriu... [more]
SERA_MYCBO3.732e-1829.95D-3-phosphoglycerate dehydrogenase OS=Mycobacteriu... [more]
GYAR_THEPD4.875e-1831.08Glyoxylate reductase OS=Thermofilum pendens (strai... [more]
GYAR_THEON1.086e-1728.18Glyoxylate reductase OS=Thermococcus onnurineus (s... [more]
SERA_METJA3.160e-1730.56D-3-phosphoglycerate dehydrogenase OS=Methanocaldo... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3AA08ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3AA08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872416 ID=FC872416; Name=FC872416; organism=Citrus clementina; type=EST; length=905bp
GGGGGGAAAAGGCCTCTGGATTTATTCAATATCTGCAGTCTCTTCAGTTC
ACAAGGGTAACTGGGCGGATTTGATATAAGCAAAATGGAGGGAATGGCTA
GGAGCAGTGATAAAAACATCACCCGTGTTCTCTTTTGCGGTCCACATTTC
CCTGCTTCCCATAATTATACTAAAGAATACTTGCAAAATTACCCTTCCAT
TCAGGTTGATGTGATCCCCATTAGTGATGCGCCTGATGTCATAGCAAACT
ACCATCTTTGTGTGGTAAAAACCATGCGGCTAGATTCAAATGTTATATCT
CGTGCGAATCAAATGAAGCTTATAATGCAGTTTGGGGTTGGCCTGGAAGG
TGTGGATATTAATGCTGCTACAAGATGCGGCATCAAAGTTGCTAGAATCC
CAGGTGACGTGACTGGAAATGCTGCATCGTGTGCTGAATTGACCATATAT
CTAATGCTGGGCCTTCTCAGAAAGCAGAATGAGATGAGAATGGCCATAGA
GCAAAAAAAACTTGGAGTGCCAACTGGTGAGACACTACTTGGGAAAACTG
TATTTATCTTGGGCTTTGGAAATATTGGGGTTGAATTGGCAAAGCGCTTG
CGACCATTTGGTGTGAAAATTATTGCCACAAAAAGGAGTTGGGCTTCTCA
TTCTCAAGTTTCTTGCCAATCTAGTGCACTTGCAGTAAAAAACGGGATCA
TTGATGATTTGGTTGATGAGAAGGGTTGTCATGAAGATATTTTTAAGTTT
GCTAGCATGGCCGACGTGGTTGTTTGTTGCCTGAGTTTAAATAAGCAGAC
GGCTGGCATTGTAAACAAGTCATTTCTATCTTCAATGAAAAAGGGTTCTC
TTCTGGTGAATATTGCTCGAGGAGGTCTTTTAGACTATGAGGCCATTGCT
CATTA
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