FC872426

Overview
NameFC872426
Unique NameFC872426
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length513
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9948 contig Ccv1_Contig9948:1..513. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872426 vs. ExPASy Swiss-Prot
Match: LOX2_ARATH (Lipoxygenase 2, chloroplastic OS=Arabidopsis thaliana GN=LOX2 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.227e-13
Identity = 37/68 (54.41%), Postives = 49/68 (72.06%), Query Frame = 2
Query:    5 WGEDKIIKGAFEKFQGRLMELKGIINLRNADKNLKNRHGAGSLPYELLMPLADKSGVTGKGVPYSISI 208
            W  + +I  AFE+F+G+L  L+G+I+ RN +  LKNR GAG + YELL P ++  GVTG GVPYSISI
Sbjct:  830 WANEPVINAAFERFKGKLQYLEGVIDERNVNITLKNRAGAGVVKYELLKPTSE-HGVTGMGVPYSISI 896          
BLAST of FC872426 vs. ExPASy Swiss-Prot
Match: LOX23_HORVU (Lipoxygenase 2.3, chloroplastic OS=Hordeum vulgare GN=LOX2.3 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.094e-13
Identity = 37/68 (54.41%), Postives = 49/68 (72.06%), Query Frame = 2
Query:    5 WGEDKIIKGAFEKFQGRLMELKGIINLRNADKNLKNRHGAGSLPYELLMPLADKSGVTGKGVPYSISI 208
            W  + ++K AFEKF GRL E +G I++RN +   KNR GAG +PYELL P ++  GVTG+G+P SISI
Sbjct:  830 WLAEPMVKAAFEKFSGRLKEAEGTIDMRNNNPENKNRCGAGIVPYELLKPFSE-PGVTGRGIPNSISI 896          
BLAST of FC872426 vs. ExPASy Swiss-Prot
Match: LOXC1_ORYSJ (Lipoxygenase 7, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX1 PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 2.734e-13
Identity = 35/68 (51.47%), Postives = 48/68 (70.59%), Query Frame = 2
Query:    5 WGEDKIIKGAFEKFQGRLMELKGIINLRNADKNLKNRHGAGSLPYELLMPLADKSGVTGKGVPYSISI 208
            W  D  ++ A++ F  RL E++G+I+ RN D+ LKNR GAG LPY+L+ P +D SGVTG G+P S SI
Sbjct:  858 WNSDAAVQAAYDGFAARLKEIEGVIDGRNKDRKLKNRCGAGILPYQLMKPFSD-SGVTGMGIPNSTSI 924          
BLAST of FC872426 vs. ExPASy Swiss-Prot
Match: LOXC2_ORYSJ (Probable lipoxygenase 8, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX2 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.357e-12
Identity = 34/68 (50.00%), Postives = 47/68 (69.12%), Query Frame = 2
Query:    5 WGEDKIIKGAFEKFQGRLMELKGIINLRNADKNLKNRHGAGSLPYELLMPLADKSGVTGKGVPYSISI 208
            W  D  ++ A+  F  RL E++G+I+ RN D+ LKNR GAG LPY+L+ P +D +GVTG G+P S SI
Sbjct:  875 WNSDAAVQAAYAGFTARLKEIEGVIDGRNKDRKLKNRCGAGILPYQLMKPFSD-AGVTGMGIPNSTSI 941          
BLAST of FC872426 vs. ExPASy Swiss-Prot
Match: LOX6_ARATH (Lipoxygenase 6, choloroplastic OS=Arabidopsis thaliana GN=LOX6 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.559e-11
Identity = 35/68 (51.47%), Postives = 45/68 (66.18%), Query Frame = 2
Query:    5 WGEDKIIKGAFEKFQGRLMELKGIINLRNADKNLKNRHGAGSLPYELLMPLADKSGVTGKGVPYSISI 208
            W +D+ +   F KF   L++++  IN RN DK LKNR GAG  PYELL+P     GVTG+G+P SISI
Sbjct:  851 WFQDEQVVKYFNKFSEELVKIEKTINERNKDKKLKNRTGAGMPPYELLLP-TSPHGVTGRGIPNSISI 917          
The following BLAST results are available for this feature:
BLAST of FC872426 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
LOX2_ARATH1.227e-1354.41Lipoxygenase 2, chloroplastic OS=Arabidopsis thali... [more]
LOX23_HORVU2.094e-1354.41Lipoxygenase 2.3, chloroplastic OS=Hordeum vulgare... [more]
LOXC1_ORYSJ2.734e-1351.47Lipoxygenase 7, chloroplastic OS=Oryza sativa subs... [more]
LOXC2_ORYSJ1.357e-1250.00Probable lipoxygenase 8, chloroplastic OS=Oryza sa... [more]
LOX6_ARATH2.559e-1151.47Lipoxygenase 6, choloroplastic OS=Arabidopsis thal... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAB1BE12ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB1BE12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872426 ID=FC872426; Name=FC872426; organism=Citrus clementina; type=EST; length=513bp
GGGGTGGGGTGAAGATAAAATTATAAAGGGTGCCTTCGAAAAGTTTCAGG
GCAGGTTGATGGAGCTTAAAGGGATTATTAATTTGAGGAATGCAGATAAG
AATTTGAAGAATAGACATGGAGCTGGCAGTCTGCCATATGAGCTCTTGAT
GCCACTTGCGGACAAATCTGGTGTCACAGGAAAAGGAGTTCCGTACAGCA
TCTCTATCTAGAGTTCAAATTGCACTTTTCCTTTATTTACTTGTAATGAA
TAAGCTAGTTCTAATAATGCGGAAAACAATGACAAGTGGGTACTCCGAAA
CTTGAATTGTATGTTAAGAAAATCCTGGTGGGATACTTTGTGCATTCAGT
GACACTCTTTCGTTGAATTTTTGTCGATTAATACTATTCGGACAAAAAAT
ATGTAATCCCGCGCTGGTTTAAACATTTAATTTTCAACATTATTAACATT
TTTTTTAGCATATATTTAGTTCACTTAATATTCAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAA
back to top