FC872427

Overview
NameFC872427
Unique NameFC872427
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length823
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9949 contig Ccv1_Contig9949:1..823. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872427 vs. ExPASy Swiss-Prot
Match: ADH_SCHPO (Alcohol dehydrogenase OS=Schizosaccharomyces pombe GN=adh1 PE=1 SV=2)

HSP 1 Score: 231.876 bits (590), Expect = 3.381e-60
Identity = 121/251 (48.21%), Postives = 157/251 (62.55%), Query Frame = 3
Query:   69 PKTGAACVFKDHNANIDFVKDHPVPQQADLKPGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLNSKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCASYGADKFVDFKDHSDPEKFIKAIKDMCDGVGPHAAVV 821
            P    A VF  H    + VK   VP  A+    EVLV + Y+GVCHTDLHA +GDWP   ++PL+GGHEGAG +V +G G +T LK+G  VG+KW+  SC +CE C +  E  C   Q SGY+VDGTFQ Y ++ A H T IP+ +PLE AAPI+CAG+T YRAL  SK  PG++               QYA AM +RV+AIDTGDDK +L  S+GA+ F+DFK  +D    I+A+K   +G G H  +V
Sbjct:    4 PDKQLAAVFHTHGGP-ENVKFEEVPV-AEPGQDEVLVNIKYTGVCHTDLHALQGDWPLPAKMPLIGGHEGAGVVVKVGAG-VTRLKIGDRVGVKWMNSSCGNCEYCMKAEETICPHIQLSGYTVDGTFQHYCIANATHATIIPESVPLEVAAPIMCAGITCYRALKESKVGPGEWICIPGAGGGLGHLAVQYAKAMAMRVVAIDTGDDKAELVKSFGAEVFLDFKKEAD---MIEAVKAATNG-GAHGTLV 247          
BLAST of FC872427 vs. ExPASy Swiss-Prot
Match: ADH1_PICST (Alcohol dehydrogenase 1 OS=Pichia stipitis GN=ADH1 PE=3 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 1.285e-59
Identity = 122/253 (48.22%), Postives = 156/253 (61.66%), Query Frame = 3
Query:   60 LDYPKTGAACVFKDHNANIDFVKDHPVPQQADLKPGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLNSKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCASYGADKFVDFKDHSDPEKFIKAIKDMCDGVGPHAAV 818
            +  P T  A VF+ +   + + KD PVP     KP E+L+ V YSGVCHTDLHAWKGDWP   +LPLVGGHEGAG +V IG   +T  ++G   GIKWL  SCL+CE C+   E  C++A  SGY+ DG+FQQYA + A     +P G  L QAAPILCAG+TVY+AL  ++ +PG +               QYA AMG RVIAID G++K +   S GA+ +VDF    D    +K I+   DG GPHAA+
Sbjct:    1 MSVPTTQKAVVFESNGGPLLY-KDIPVPTP---KPNEILINVKYSGVCHTDLHAWKGDWPLDTKLPLVGGHEGAGVVVGIGSN-VTGWELGDYAGIKWLNGSCLNCEFCQHSDEPNCAKADLSGYTHDGSFQQYATADAVQAARLPKGTDLAQAAPILCAGITVYKALKTAQIQPGNWVCISGAGGGLGSLAIQYAKAMGFRVIAIDGGEEKGEFVKSLGAEAYVDFTVSKD---IVKDIQTATDG-GPHAAI 244          
BLAST of FC872427 vs. ExPASy Swiss-Prot
Match: ADH2_CANAL (Alcohol dehydrogenase 2 OS=Candida albicans GN=ADH2 PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 2.191e-59
Identity = 118/253 (46.64%), Postives = 155/253 (61.26%), Query Frame = 3
Query:   60 LDYPKTGAACVFKDHNANIDFVKDHPVPQQADLKPGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLNSKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCASYGADKFVDFKDHSDPEKFIKAIKDMCDGVGPHAAV 818
            +  P T  A +F+ +   +++ KD PVP+    K  E+L+ V YSGVCHTDLHAWKGDWP   +LPLVGGHEGAG +VA+G+  +   KVG   G+KWL  SCL+CE C+ G E  C++A  SGY+ DG+FQQYA + A     IP G  L   APILCAGVTVY+AL  ++   GQ+               QYA AMG RV+AID G+DK +   S GA+ F+DF    D    ++A+K   +G GPH  +
Sbjct:    1 MSVPTTQKAVIFETNGGKLEY-KDIPVPKP---KANELLINVKYSGVCHTDLHAWKGDWPLATKLPLVGGHEGAGVVVALGEN-VKGWKVGDYAGVKWLNGSCLNCEYCQSGAEPNCAEADLSGYTHDGSFQQYATADAVQAARIPAGTDLANVAPILCAGVTVYKALKTAELEAGQWVAISGAAGGLGSLAVQYAKAMGYRVLAIDGGEDKGEFVKSLGAETFIDFTKEKD---VVEAVKKATNG-GPHGVI 244          
BLAST of FC872427 vs. ExPASy Swiss-Prot
Match: ADH4_KLULA (Alcohol dehydrogenase 4, mitochondrial OS=Kluyveromyces lactis GN=ADH4 PE=3 SV=2)

HSP 1 Score: 227.639 bits (579), Expect = 6.376e-59
Identity = 117/263 (44.49%), Postives = 158/263 (60.08%), Query Frame = 3
Query:   30 STAIKTMSQTLDYPKTGAACVFKDHNANIDFVKDHPVPQQADLKPGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLNSKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCASYGADKFVDFKDHSDPEKFIKAIKDMCDGVGPHAAV 818
            S +   ++ +   P+T    +F ++   +++ KD PVP+    K  E+L+ V YSGVCHTDLHAWKGDWP   +LPLVGGHEGAG +VA G+  + N ++G   GIKWL  SC+ CE C +G E+ C QA  SGY+ DG+FQQYA + A     IP G  L + APILCAGVTVY+AL  +  +PGQ+               QYA AMGLRV+ ID GD K +L    G + F+DF+   D    +  I++  +G GPH  +
Sbjct:   18 SRSFLRLNSSFAIPETQKGVIFYENGGKLEY-KDLPVPKP---KANEILINVKYSGVCHTDLHAWKGDWPLPVKLPLVGGHEGAGIVVAKGEN-VKNFEIGDYAGIKWLNGSCMSCELCEQGYESNCLQADLSGYTHDGSFQQYATADAVQAAQIPKGTDLAEIAPILCAGVTVYKALKTADLKPGQWVAISGAAGGLGSLAVQYAKAMGLRVLGIDGGDGKEELFKQCGGEVFIDFRKSKD---MVADIQEATNG-GPHGVI 271          
BLAST of FC872427 vs. ExPASy Swiss-Prot
Match: ADH3_EMENI (Alcohol dehydrogenase 3 OS=Emericella nidulans GN=alcC PE=3 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 6.376e-59
Identity = 115/233 (49.36%), Postives = 145/233 (62.23%), Query Frame = 3
Query:  126 KDHPVPQQADLKPGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLT-NLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLNSKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCASYGADKFVDFKDHSDPEKFIKAIKDMCDGVGPHAAVV 821
            K  PVP+     P E+LV++ YSGVCHTDLHA KGDWP   ++PL+GGHEGAG +VA G+     + K+G   GIKWL  SCL CE C +  E  C  A  SGY+VDGTFQQY +  A   + IPD +PL+ AAPILCAG+TVY+ L  S ARPGQ                QYA AMGLR IAID+GD+K+ +C   GA+ F+DF   +D    +KA      G+G HA ++
Sbjct:   22 KQVPVPKPG---PDEILVKMRYSGVCHTDLHAMKGDWPLPSKMPLIGGHEGAGVVVAKGELVKDEDFKIGDRAGIKWLNGSCLSCEMCMQADEPLCPHASLSGYTVDGTFQQYTIGKAALASKIPDNVPLDAAAPILCAGITVYKGLKESGARPGQTVAIVGAGGGLGSLAQQYAKAMGLRTIAIDSGDEKKAMCEQLGAEVFIDFSKSADVVADVKAATP--GGLGAHAVIL 249          
BLAST of FC872427 vs. ExPASy Swiss-Prot
Match: ADH1_ASPFN (Alcohol dehydrogenase 1 OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC 167) GN=adh1 PE=2 SV=2)

HSP 1 Score: 227.639 bits (579), Expect = 6.376e-59
Identity = 112/232 (48.28%), Postives = 147/232 (63.36%), Query Frame = 3
Query:  126 KDHPVPQQADLKPGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLNSKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCASYGADKFVDFKDHSDPEKFIKAIKDMCDGVGPHAAVV 821
            K  PVP+     P E+LV+V YSGVCHTDLHA KGDWP   ++PLVGGHEGAG +VA GD  +T  ++G + G+KWL  SCL CE C++  E  C  A  SGY+VDGTFQQYA+  A H + +P  +PL+  AP+LCAG+TVY+ L  S  RPGQ                QYA AMG+RV+AID G++K+ +C   GA+ +VDF    D    +KA     +G+G HA ++
Sbjct:   22 KQIPVPKPG---PDEILVKVRYSGVCHTDLHALKGDWPLPVKMPLVGGHEGAGVVVARGD-LVTEFEIGDHAGLKWLNGSCLACEFCKQADEPLCPNASLSGYTVDGTFQQYAIGKATHASKLPKNVPLDAVAPVLCAGITVYKGLKESGVRPGQTVAIVGAGGGLGSLALQYAKAMGIRVVAIDGGEEKQAMCEQLGAEAYVDFTKTQDLVADVKAATP--EGLGAHAVIL 247          
BLAST of FC872427 vs. ExPASy Swiss-Prot
Match: ADH1_CANAL (Alcohol dehydrogenase 1 OS=Candida albicans GN=ADH1 PE=1 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 8.327e-59
Identity = 120/250 (48.00%), Postives = 152/250 (60.80%), Query Frame = 3
Query:   69 PKTGAACVFKDHNANIDFVKDHPVPQQADLKPGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLNSKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCASYGADKFVDFKDHSDPEKFIKAIKDMCDGVGPHAAV 818
            PKT  A VF  +   + + KD+PVP     KP E+L+ V YSGVCHTDLHA KGDWP   +LPLVGGHEGAG +V +G+  +   K+G   GIKWL  SC+ CE C++G E  C +A  SGY+ DG+F+QYA + A     IP G  L   APILCAGVTVY+AL  +    GQ+               QYA AMGLRV+AID GD+K +   S GA+ +VDF    D    ++A+K   DG GPH A+
Sbjct:    6 PKTQKAVVFDTNGGQLVY-KDYPVPTP---KPNELLIHVKYSGVCHTDLHARKGDWPLATKLPLVGGHEGAGVVVGMGEN-VKGWKIGDFAGIKWLNGSCMSCEFCQQGAEPNCGEADLSGYTHDGSFEQYATADAVQAAKIPAGTDLANVAPILCAGVTVYKALKTADLAAGQWVAISGAGGGLGSLAVQYARAMGLRVVAIDGGDEKGEFVKSLGAEAYVDFTKDKD---IVEAVKKATDG-GPHGAI 246          
BLAST of FC872427 vs. ExPASy Swiss-Prot
Match: ADH1_EMENI (Alcohol dehydrogenase 1 OS=Emericella nidulans GN=alcA PE=3 SV=2)

HSP 1 Score: 225.713 bits (574), Expect = 2.423e-58
Identity = 111/232 (47.84%), Postives = 148/232 (63.79%), Query Frame = 3
Query:  126 KDHPVPQQADLKPGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLNSKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCASYGADKFVDFKDHSDPEKFIKAIKDMCDGVGPHAAVV 821
            K  PVP+     P ++LV++ YSGVCHTDLHA  G WP   ++PLVGGHEGAG +VA G+  +   ++G   GIKWL  SC +CE CR+  +  C++AQ SGY+VDGTFQQYA+  A H + IP G+PL+ AAP+LCAG+TVY+ L  +  RPGQ                QYA AMG+RV+A+D GD+KR +C S G + +VDF    D    +KA     DG+G HA ++
Sbjct:   22 KQIPVPKPG---PDQILVKIRYSGVCHTDLHAMMGHWPIPVKMPLVGGHEGAGIVVAKGE-LVHEFEIGDQAGIKWLNGSCGECEFCRQSDDPLCARAQLSGYTVDGTFQQYALGKASHASKIPAGVPLDAAAPVLCAGITVYKGLKEAGVRPGQTVAIVGAGGGLGSLAQQYAKAMGIRVVAVDGGDEKRAMCESLGTETYVDFTKSKDLVADVKAATP--DGLGAHAVIL 247          
BLAST of FC872427 vs. ExPASy Swiss-Prot
Match: ADH1_NEUCR (Alcohol dehydrogenase 1 OS=Neurospora crassa GN=adh-1 PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 2.051e-57
Identity = 113/220 (51.36%), Postives = 137/220 (62.27%), Query Frame = 3
Query:  162 PGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLNSKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCASYGADKFVDFKDHSDPEKFIKAIKDMCDGVGPHAAVV 821
            P EVL+ V YSGVCHTDLHA KGDWP   ++PLVGGHEGAG +VA G+  +T ++VG + GIKWL  SCL C  C +  E  C  A  SGY+VDG+FQQYA++ A HV  IP G  LE  AP+LCAG+TVY+ L  S  RPGQ                QYA AMGL  IAID G++K K C   GA  +VDF    D    +KA     DG+GPHA ++
Sbjct:   34 PDEVLINVKYSGVCHTDLHAMKGDWPLATKMPLVGGHEGAGVVVAKGE-LVTEVEVGDHAGIKWLNGSCLACSFCMQADEPLCPHALLSGYTVDGSFQQYAIAKAAHVAKIPKGCDLETTAPVLCAGITVYKGLKESGVRPGQCVAIVGAGGGLGSMAIQYANAMGLHAIAIDGGEEKGKNCRELGAQAYVDFTTTKDLVADVKAATP--DGLGPHAVIL 250          
BLAST of FC872427 vs. ExPASy Swiss-Prot
Match: ADH3_KLULA (Alcohol dehydrogenase 3, mitochondrial OS=Kluyveromyces lactis GN=ADH3 PE=3 SV=2)

HSP 1 Score: 219.164 bits (557), Expect = 2.268e-56
Identity = 114/261 (43.68%), Postives = 157/261 (60.15%), Query Frame = 3
Query:   36 AIKTMSQTLDYPKTGAACVFKDHNANIDFVKDHPVPQQADLKPGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLNSKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCASYGADKFVDFKDHSDPEKFIKAIKDMCDGVGPHAAV 818
            +I+T++ ++  P+T    +F ++   +++ KD PVP+    KP E+L+ V YSGVCHTDLHAWKGDWP   +LPLVGGHEGAG +VA+G+  +    +G   GIKWL  SC+ CE C    E+ C  A  SGY+ DG+FQQYA + A     IP G  L + APILCAGVTVY+AL ++  + G +               QYA AMG RV+ ID G++K KL    G + FVDF    D    +  I+++ +G GPH  +
Sbjct:   21 SIRTLATSV--PETQKGVIFYENGGKLEY-KDIPVPKP---KPNEILINVKYSGVCHTDLHAWKGDWPLPTKLPLVGGHEGAGVVVAMGEN-VKGWNIGDFAGIKWLNGSCMSCEYCELSNESNCPDADLSGYTHDGSFQQYATADAVQAARIPKGTDLAEVAPILCAGVTVYKALKSANLKAGDWVAISGAAGGLGSLAVQYAKAMGYRVVGIDGGEEKGKLVKQLGGEAFVDFTKTKD---MVAEIQEITNG-GPHGVI 270          
The following BLAST results are available for this feature:
BLAST of FC872427 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 223
Match NameE-valueIdentityDescription
ADH_SCHPO3.381e-6048.21Alcohol dehydrogenase OS=Schizosaccharomyces pombe... [more]
ADH1_PICST1.285e-5948.22Alcohol dehydrogenase 1 OS=Pichia stipitis GN=ADH1... [more]
ADH2_CANAL2.191e-5946.64Alcohol dehydrogenase 2 OS=Candida albicans GN=ADH... [more]
ADH4_KLULA6.376e-5944.49Alcohol dehydrogenase 4, mitochondrial OS=Kluyvero... [more]
ADH3_EMENI6.376e-5949.36Alcohol dehydrogenase 3 OS=Emericella nidulans GN=... [more]
ADH1_ASPFN6.376e-5948.28Alcohol dehydrogenase 1 OS=Aspergillus flavus (str... [more]
ADH1_CANAL8.327e-5948.00Alcohol dehydrogenase 1 OS=Candida albicans GN=ADH... [more]
ADH1_EMENI2.423e-5847.84Alcohol dehydrogenase 1 OS=Emericella nidulans GN=... [more]
ADH1_NEUCR2.051e-5751.36Alcohol dehydrogenase 1 OS=Neurospora crassa GN=ad... [more]
ADH3_KLULA2.268e-5643.68Alcohol dehydrogenase 3, mitochondrial OS=Kluyvero... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3AB01ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3AB01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872427 ID=FC872427; Name=FC872427; organism=Citrus clementina; type=EST; length=823bp
GGGGACTCTCTCTTTCTCTCACCAACAACTCTACAGCAATCAAAACTATG
TCACAAACCCTCGATTACCCCAAGACCGGCGCAGCCTGCGTCTTCAAAGA
CCACAATGCCAACATTGATTTCGTCAAGGATCACCCAGTCCCCCAACAGG
CTGACCTCAAGCCTGGAGAGGTCCTCGTTCGTGTCGACTACTCTGGTGTA
TGCCACACCGATCTTCACGCTTGGAAAGGTGACTGGCCGGCGAAGCCTCG
TCTACCCCTCGTAGGTGGTCATGAGGGTGCAGGTCCAATCGTGGCCATCG
GAGACGGTACATTGACTAACCTCAAAGTTGGTCAAAACGTCGGAATCAAA
TGGCTCGCCGACTCGTGTCTCGACTGCGAGAACTGTCGTGAAGGTATCGA
GGCTACATGTTCTCAGGCTCAATGCTCCGGATACTCTGTCGACGGTACTT
TCCAACAATACGCAGTATCTTACGCTCGTCACGTCACCCCTATTCCCGAC
GGATTACCCTTGGAACAAGCCGCTCCTATCTTGTGCGCTGGAGTTACTGT
CTATCGTGCTCTCTTGAACTCGAAAGCGAGACCTGGACAATATGTCGCCA
TTGTGGGTGCTGGAGGAGGTCTAGGACATCTAGCTGTGCAATACGCTGCC
GCCATGGGACTTCGAGTCATCGCCATCGACACTGGTGACGACAAGAGGAA
ACTTTGTGCCTCATACGGTGCCGACAAATTCGTCGATTTCAAGGATCACT
CGGATCCCGAGAAGTTTATCAAAGCGATCAAGGATATGTGCGATGGCGTA
GGACCTCACGCTGCTGTAGTTGC
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