FC872439

Overview
NameFC872439
Unique NameFC872439
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length816
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872439 vs. ExPASy Swiss-Prot
Match: TRXH_ORYSJ (Thioredoxin H-type OS=Oryza sativa subsp. japonica GN=TRXH PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.374e-13
Identity = 36/104 (34.62%), Postives = 60/104 (57.69%), Query Frame = 3
Query:  306 ILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWLVIGELSAEHPHVTTYKIDIDQKGLESTLSKLNISAVPTFLFFQHGEKVAEIVGADVSRLKTTM 617
            ++   + +EF++ + K K+     I  FTA+WCGPC+FI  V  E + + P     K+D+D+  L+    K N+ A+PTFLF + G +  ++VGA    L+ T+
Sbjct:    8 VIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDE--LKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTI 109          
BLAST of FC872439 vs. ExPASy Swiss-Prot
Match: TRXH_ORYSI (Thioredoxin H-type OS=Oryza sativa subsp. indica GN=TRXH PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.374e-13
Identity = 36/104 (34.62%), Postives = 60/104 (57.69%), Query Frame = 3
Query:  306 ILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWLVIGELSAEHPHVTTYKIDIDQKGLESTLSKLNISAVPTFLFFQHGEKVAEIVGADVSRLKTTM 617
            ++   + +EF++ + K K+     I  FTA+WCGPC+FI  V  E + + P     K+D+D+  L+    K N+ A+PTFLF + G +  ++VGA    L+ T+
Sbjct:    8 VIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDE--LKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTI 109          
BLAST of FC872439 vs. ExPASy Swiss-Prot
Match: TRXH2_TOBAC (Thioredoxin H-type 2 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.222e-13
Identity = 38/104 (36.54%), Postives = 62/104 (59.62%), Query Frame = 3
Query:  306 ILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWLVIGELSAEHPHVTTYKIDIDQKGLESTLSKLNISAVPTFLFFQHGEKVAEIVGADVSRLKTTM 617
            ++ + + + +N  L K  DD    +  FTA+WCGPCKFI     EL+ + P VT  K+D+D+  L+S  +   + A+PTF+F + G+ V ++VGA    L+ T+
Sbjct:    7 VIGVHTVDAWNEHLQKGIDDKKLIVVDFTASWCGPCKFIASFYAELAKKMPTVTFLKVDVDE--LKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKDELQQTI 108          
BLAST of FC872439 vs. ExPASy Swiss-Prot
Match: TRXH_FAGES (Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.820e-13
Identity = 32/97 (32.99%), Postives = 56/97 (57.73%), Query Frame = 3
Query:  300 SNILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWLVIGELSAEHPHVTTYKIDIDQKGLESTLSKLNISAVPTFLFFQHGEKVAEIVGA 590
            + ++   + +E+N    K KD     +  FTA+WCGPC+ I   + EL+ + PHV  +K+D+D   L+    +  + A+P+F+  + G++V  IVGA
Sbjct:    5 AQVIACHTVQEWNEKFQKAKDSGKLIVIDFTASWCGPCRVITPYVSELAKKFPHVAFFKVDVDD--LKDVAEEYKVEAMPSFVILKEGQEVERIVGA 99          
BLAST of FC872439 vs. ExPASy Swiss-Prot
Match: TRXH1_TOBAC (Thioredoxin H-type 1 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.519e-12
Identity = 33/97 (34.02%), Postives = 61/97 (62.89%), Query Frame = 3
Query:  327 EEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWLVIGELSAEHPHVTTYKIDIDQKGLESTLSKLNISAVPTFLFFQHGEKVAEIVGADVSRLKTTM 617
            EE+N    K  +     +  FTA+WCGPC+FI  ++ +++ + PHV   K+D+D+  L++  ++ ++ A+PTF+F + G++V  +VGA    L+ T+
Sbjct:   21 EEWNEYFKKGVETKKLVVVDFTASWCGPCRFIAPILADIAKKMPHVIFLKVDVDE--LKTVSAEWSVEAMPTFVFIKDGKEVDRVVGAKKEELQQTI 115          
BLAST of FC872439 vs. ExPASy Swiss-Prot
Match: TRXH1_ARATH (Thioredoxin H-type 1 OS=Arabidopsis thaliana GN=TRX1 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.540e-12
Identity = 35/104 (33.65%), Postives = 60/104 (57.69%), Query Frame = 3
Query:  306 ILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWLVIGELSAEHPHVTTYKIDIDQKGLESTLSKLNISAVPTFLFFQHGEKVAEIVGADVSRLKTTM 617
            ++   + E +N  L K  +     +  FTA+WCGPC+FI     +L+ + P+V   K+D D+  L+S  S   I A+PTF+F + G+ + ++VGA    L++T+
Sbjct:    8 VIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDE--LKSVASDWAIQAMPTFMFLKEGKILDKVVGAKKDELQSTI 109          
BLAST of FC872439 vs. ExPASy Swiss-Prot
Match: TRX1_YEAST (Thioredoxin-1 OS=Saccharomyces cerevisiae GN=TRX1 PE=1 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 7.540e-12
Identity = 35/97 (36.08%), Postives = 62/97 (63.92%), Query Frame = 3
Query:  318 ESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWLVIGELSAEHPHVTTYKIDIDQKGLESTLSKLNISAVPTFLFFQHGEKVAEIVGADVSRLK 608
            ++  EF+S++ +   D L  + ++ A WCGPCK I  +I + S ++P    YK+D+D+ G      K  +SA+PT L F++G++VA++VGA+ + +K
Sbjct:    6 KTASEFDSAIAQ---DKLVVVDFY-ATWCGPCKMIAPMIEKFSEQYPQADFYKLDVDELG--DVAQKNEVSAMPTLLLFKNGKEVAKVVGANPAAIK 96          
BLAST of FC872439 vs. ExPASy Swiss-Prot
Match: TRXH_RICCO (Thioredoxin H-type OS=Ricinus communis PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.680e-11
Identity = 34/97 (35.05%), Postives = 59/97 (60.82%), Query Frame = 3
Query:  327 EEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWLVIGELSAEHPHVTTYKIDIDQKGLESTLSKLNISAVPTFLFFQHGEKVAEIVGADVSRLKTTM 617
            E +N  L K  D     +  FTA+WCGPC+FI   + EL+ + P+VT  K+D+D+  L++   +  + ++PTF+F + G+ + ++VGA    L+ T+
Sbjct:   15 EAWNEQLQKGNDTKGLIVVDFTASWCGPCRFIAPFLAELAKKLPNVTFLKVDVDE--LKTVAHEWAVESMPTFMFLKEGKIMDKVVGAKKDELQQTI 109          
BLAST of FC872439 vs. ExPASy Swiss-Prot
Match: TRXH_BRARA (Thioredoxin H-type OS=Brassica rapa GN=PEC-2 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.383e-11
Identity = 30/95 (31.58%), Postives = 58/95 (61.05%), Query Frame = 3
Query:  306 ILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWLVIGELSAEHPHVTTYKIDIDQKGLESTLSKLNISAVPTFLFFQHGEKVAEIVGA 590
            ++   + E++N+ L   K+ +   +  FTA WC PC+FI  +  EL+ +H  V  +K+D+D+  L +   + ++ A+PTF++ +  EK+ ++VGA
Sbjct:   13 VIACHTVEDWNNKLKAAKESNKLIVIDFTAVWCPPCRFIAPIFVELAKKHLDVVFFKVDVDE--LATVAKEFDVQAMPTFVYMKGEEKLDKVVGA 105          
BLAST of FC872439 vs. ExPASy Swiss-Prot
Match: TRXH_BRAOL (Thioredoxin H-type OS=Brassica oleracea GN=BOPC17 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.383e-11
Identity = 30/95 (31.58%), Postives = 58/95 (61.05%), Query Frame = 3
Query:  306 ILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWLVIGELSAEHPHVTTYKIDIDQKGLESTLSKLNISAVPTFLFFQHGEKVAEIVGA 590
            ++   + E++N+ L   K+ +   +  FTA WC PC+FI  +  EL+ +H  V  +K+D+D+  L +   + ++ A+PTF++ +  EK+ ++VGA
Sbjct:   13 VIACHTVEDWNNKLKAAKESNKLIVIDFTAVWCPPCRFIAPIFVELAKKHLDVVFFKVDVDE--LATVAQEFDVQAMPTFVYMKGEEKLDKVVGA 105          
The following BLAST results are available for this feature:
BLAST of FC872439 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
TRXH_ORYSJ1.374e-1334.62Thioredoxin H-type OS=Oryza sativa subsp. japonica... [more]
TRXH_ORYSI1.374e-1334.62Thioredoxin H-type OS=Oryza sativa subsp. indica G... [more]
TRXH2_TOBAC5.222e-1336.54Thioredoxin H-type 2 OS=Nicotiana tabacum PE=3 SV=... [more]
TRXH_FAGES6.820e-1332.99Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV... [more]
TRXH1_TOBAC1.519e-1234.02Thioredoxin H-type 1 OS=Nicotiana tabacum PE=2 SV=... [more]
TRXH1_ARATH7.540e-1233.65Thioredoxin H-type 1 OS=Arabidopsis thaliana GN=TR... [more]
TRX1_YEAST7.540e-1236.08Thioredoxin-1 OS=Saccharomyces cerevisiae GN=TRX1 ... [more]
TRXH_RICCO1.680e-1135.05Thioredoxin H-type OS=Ricinus communis PE=3 SV=1[more]
TRXH_BRARA6.383e-1131.58Thioredoxin H-type OS=Brassica rapa GN=PEC-2 PE=2 ... [more]
TRXH_BRAOL6.383e-1131.58Thioredoxin H-type OS=Brassica oleracea GN=BOPC17 ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1BF02ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB1BF02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872439 ID=FC872439; Name=FC872439; organism=Citrus clementina; type=EST; length=816bp
GGGGGCCCGCAGCGGCACCGCTCCCAAAAACCCTAACGAAGAAGAGAGGT
GAATTTGCAGAGAAAATGAGAGGAAGTTCTTCAGTTATTTTGCGTCGATT
ACTTGTTCGACGCCAAGTCTTAAATCCCAATTCTACTAATATTGCAAAAT
CACTAATTTCGCATTCTACAAACAACACTACTGTTCCCAAGATACCCTCG
TTCCGTAATTATATTCCTGCTAGCTCCTCGCAATCACAGTCACAGATGCT
TCCTTCTCTTCAATTCCACAGAACTCTGTTCTCATCCCCAGATGGTCCAT
CAAATATTCTAGTCATCGAGTCAGGGGAAGAGTTCAATAGCTCACTTGGC
AAAGTTAAAGATGATTCTCTGCCAGCGATATTTTATTTCACTGCTGCTTG
GTGTGGCCCCTGCAAGTTTATATGGCTTGTCATAGGGGAGTTGAGTGCAG
AACACCCTCATGTAACAACATATAAGATTGACATTGACCAGAAAGGACTT
GAAAGCACATTAAGCAAGTTAAACATCAGTGCTGTGCCAACATTCTTGTT
CTTTCAACATGGAGAAAAGGTGGCTGAAATAGTTGGTGCTGATGTCTCAC
GGTTGAAGACAACTATGGAACAACTTTACAAGAAGGATTGAATGAAGTAA
GGATACCTGATCAGATGAGCTTGTAAGATTTTCATGAGAGATTTTGGGAA
TGATGATGATATTTGTTTTCTGTGTCAGGTTAAAGAAAATCTTTGTATAC
AGTGTTATTGTGATTTATCCATAAATGATTTGTTTAAGCAAAAAAAAAAA
AAAAAAAAAAAAAAAA
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