FC872445

Overview
NameFC872445
Unique NameFC872445
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length789
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13823 contig Ccv1_Contig13823:1433..2221. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC872445 vs. ExPASy Swiss-Prot
Match: SC61A_DICDI (Protein transport protein Sec61 subunit alpha OS=Dictyostelium discoideum GN=sec61a PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.280e-12
Identity = 36/45 (80.00%), Postives = 38/45 (84.44%), Query Frame = 3 
Query:    3 GALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFG 137
            GALTV+ADFMGAIGSGTGILLAVTIIYQYFETF KE+    G  G
Sbjct:  428 GALTVVADFMGAIGSGTGILLAVTIIYQYFETFVKEQQELSGGIG 472
[Close]
BLAST of FC872445 vs. ExPASy Swiss-Prot
Match: S61A1_RAT (Protein transport protein Sec61 subunit alpha isoform 1 OS=Rattus norvegicus GN=Sec61a1 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.526e-11
Identity = 36/45 (80.00%), Postives = 40/45 (88.89%), Query Frame = 3 
Query:    3 GALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFG 137
            GAL+VLADF+GAIGSGTGILLAVTIIYQYFE F KE+ SE+G  G
Sbjct:  429 GALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQ-SEVGSMG 472
[Close]
BLAST of FC872445 vs. ExPASy Swiss-Prot
Match: S61A1_PONAB (Protein transport protein Sec61 subunit alpha isoform 1 OS=Pongo abelii GN=SEC61A1 PE=2 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 3.526e-11
Identity = 36/45 (80.00%), Postives = 40/45 (88.89%), Query Frame = 3 
Query:    3 GALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFG 137
            GAL+VLADF+GAIGSGTGILLAVTIIYQYFE F KE+ SE+G  G
Sbjct:  429 GALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQ-SEVGSMG 472
[Close]
BLAST of FC872445 vs. ExPASy Swiss-Prot
Match: S61A1_MOUSE (Protein transport protein Sec61 subunit alpha isoform 1 OS=Mus musculus GN=Sec61a1 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.526e-11
Identity = 36/45 (80.00%), Postives = 40/45 (88.89%), Query Frame = 3 
Query:    3 GALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFG 137
            GAL+VLADF+GAIGSGTGILLAVTIIYQYFE F KE+ SE+G  G
Sbjct:  429 GALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQ-SEVGSMG 472
[Close]
BLAST of FC872445 vs. ExPASy Swiss-Prot
Match: S61A1_HUMAN (Protein transport protein Sec61 subunit alpha isoform 1 OS=Homo sapiens GN=SEC61A1 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.526e-11
Identity = 36/45 (80.00%), Postives = 40/45 (88.89%), Query Frame = 3 
Query:    3 GALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFG 137
            GAL+VLADF+GAIGSGTGILLAVTIIYQYFE F KE+ SE+G  G
Sbjct:  429 GALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQ-SEVGSMG 472
[Close]
BLAST of FC872445 vs. ExPASy Swiss-Prot
Match: S61A1_CANFA (Protein transport protein Sec61 subunit alpha isoform 1 OS=Canis familiaris GN=SEC61A1 PE=1 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 3.526e-11
Identity = 36/45 (80.00%), Postives = 40/45 (88.89%), Query Frame = 3 
Query:    3 GALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFG 137
            GAL+VLADF+GAIGSGTGILLAVTIIYQYFE F KE+ SE+G  G
Sbjct:  429 GALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQ-SEVGSMG 472
[Close]
BLAST of FC872445 vs. ExPASy Swiss-Prot
Match: S61A1_BOVIN (Protein transport protein Sec61 subunit alpha isoform 1 OS=Bos taurus GN=SEC61A1 PE=2 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 3.526e-11
Identity = 36/45 (80.00%), Postives = 40/45 (88.89%), Query Frame = 3 
Query:    3 GALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFG 137
            GAL+VLADF+GAIGSGTGILLAVTIIYQYFE F KE+ SE+G  G
Sbjct:  429 GALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQ-SEVGSMG 472
[Close]
BLAST of FC872445 vs. ExPASy Swiss-Prot
Match: S61A2_PONAB (Protein transport protein Sec61 subunit alpha isoform 2 OS=Pongo abelii GN=SEC61A2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.606e-11
Identity = 36/45 (80.00%), Postives = 40/45 (88.89%), Query Frame = 3 
Query:    3 GALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFG 137
            GAL+VLADF+GAIGSGTGILLAVTIIYQYFE F KE+A E+G  G
Sbjct:  429 GALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQA-EVGGMG 472
[Close]
BLAST of FC872445 vs. ExPASy Swiss-Prot
Match: S61A2_MOUSE (Protein transport protein Sec61 subunit alpha isoform 2 OS=Mus musculus GN=Sec61a2 PE=2 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 4.606e-11
Identity = 36/45 (80.00%), Postives = 40/45 (88.89%), Query Frame = 3 
Query:    3 GALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFG 137
            GAL+VLADF+GAIGSGTGILLAVTIIYQYFE F KE+A E+G  G
Sbjct:  429 GALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQA-EVGGMG 472
[Close]
BLAST of FC872445 vs. ExPASy Swiss-Prot
Match: S61A2_HUMAN (Protein transport protein Sec61 subunit alpha isoform 2 OS=Homo sapiens GN=SEC61A2 PE=2 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 4.606e-11
Identity = 36/45 (80.00%), Postives = 40/45 (88.89%), Query Frame = 3 
Query:    3 GALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFG 137
            GAL+VLADF+GAIGSGTGILLAVTIIYQYFE F KE+A E+G  G
Sbjct:  429 GALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQA-EVGGMG 472
The following BLAST results are available for this feature:
BLAST of FC872445 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
SC61A_DICDI9.280e-1280.00Protein transport protein Sec61 subunit alpha OS=D... [more]
S61A1_RAT3.526e-1180.00Protein transport protein Sec61 subunit alpha isof... [more]
S61A1_PONAB3.526e-1180.00Protein transport protein Sec61 subunit alpha isof... [more]
S61A1_MOUSE3.526e-1180.00Protein transport protein Sec61 subunit alpha isof... [more]
S61A1_HUMAN3.526e-1180.00Protein transport protein Sec61 subunit alpha isof... [more]
S61A1_CANFA3.526e-1180.00Protein transport protein Sec61 subunit alpha isof... [more]
S61A1_BOVIN3.526e-1180.00Protein transport protein Sec61 subunit alpha isof... [more]
S61A2_PONAB4.606e-1180.00Protein transport protein Sec61 subunit alpha isof... [more]
S61A2_MOUSE4.606e-1180.00Protein transport protein Sec61 subunit alpha isof... [more]
S61A2_HUMAN4.606e-1180.00Protein transport protein Sec61 subunit alpha isof... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1BF10ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB1BF10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872445 ID=FC872445; Name=FC872445; organism=Citrus clementina; type=EST; length=789bp
GGGGTGCATTAACAGTCCTGGCTGATTTCATGGGAGCAATTGGGTCAGGA
ACTGGGATATTGCTCGCAGTTACGATCATATATCAGTACTTTGAGACGTT
TGAGAAGGAGAGAGCTAGTGAACTTGGCTTCTTTGGCTTTTAATACACCA
ATGATCTTGAGTTTCAGATTAGTTGGTGAGTAGTATTGTGCAATATTGTT
GCAGAATTCAAAGACTTAACATAGGCCATACCTTGTTAACACCTATGAAT
AGAGATTCAGATCAGTCTGTAGTTTGGCCAATGCTTAGCCGCCTTTCTTT
TTTCTTTTGAAAGTTTCTGTACGTTCAACACGCCAAGGAAGATAGAAAGA
ATTTCTGTTGAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAATTAAAAAAAAAAAAAAAAAAAAA
AAAAAAAACCTGGGGGCCCCCCCCGCCCCATCCAACTCAAAACCCAAGAA
ACTTTAGGCGGGGGGCCCCATTTCAACCCCATTGGGCAATTTCCCCCAAA
AGGGAGCCAAATAAAATTTCCGGGGCCGCCTTTTTACACCGCCGGGAGGG
GAAAACCCCGGGGTTTCCCCAATTAATCCCCTTGGCACCAATCCCCCTTT
TCCCCAGTGGGGGAAAAACCAAAAAGGCCCCCCCCATTCCCCTTCCCCAA
CATTTGCCCACCCGGATGGGCAAAGGAAATTTGAAGCCTTAAATATTTTG
TAAAATTTCGCTTAAATTTTTTGTAAAATCACCCCATTT
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