FC872458

Overview
NameFC872458
Unique NameFC872458
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length427
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872458 vs. ExPASy Swiss-Prot
Match: SCP17_ARATH (Serine carboxypeptidase-like 17 OS=Arabidopsis thaliana GN=SCPL17 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.991e-14
Identity = 38/70 (54.29%), Postives = 46/70 (65.71%), Query Frame = 2
Query:    5 WIKSLNLTIETGWQPWLVESQVAGYWYRYKGKNNYHLTFATVKGAGHTGPEYKPKECLAMIDRWFASYPL 214
            WI+SLN +I   W+PW+V++QVAGY   Y  K    +TFATVKG GHT  EYKP E   MI RW +  PL
Sbjct:  373 WIRSLNYSIVDDWRPWMVQNQVAGYTRTYANK----MTFATVKGGGHTS-EYKPVETYIMIKRWLSGQPL 437          
BLAST of FC872458 vs. ExPASy Swiss-Prot
Match: SCP13_ARATH (Serine carboxypeptidase-like 13 OS=Arabidopsis thaliana GN=SCPL13 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 1.991e-14
Identity = 35/70 (50.00%), Postives = 46/70 (65.71%), Query Frame = 2
Query:    5 WIKSLNLTIETGWQPWLVESQVAGYWYRYKGKNNYHLTFATVKGAGHTGPEYKPKECLAMIDRWFASYPL 214
            WI+SLN +I   W+PW++  Q+AGY   Y  K    +TFAT+KG+GHT  EYKPKE   M  RW ++ PL
Sbjct:  366 WIRSLNYSITDDWKPWMINDQIAGYTRSYSNK----MTFATIKGSGHTA-EYKPKETSIMFKRWISAQPL 430          
BLAST of FC872458 vs. ExPASy Swiss-Prot
Match: SCP12_ARATH (Serine carboxypeptidase-like 12 OS=Arabidopsis thaliana GN=SCPL12 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.291e-13
Identity = 35/70 (50.00%), Postives = 45/70 (64.29%), Query Frame = 2
Query:    5 WIKSLNLTIETGWQPWLVESQVAGYWYRYKGKNNYHLTFATVKGAGHTGPEYKPKECLAMIDRWFASYPL 214
            WIKSLN +I   W+PW+++ Q+AGY   Y  K    +TFATVKG+GHT  EYKP E   M  RW + + L
Sbjct:  371 WIKSLNYSIIHEWRPWMIKDQIAGYTRTYSNK----MTFATVKGSGHTA-EYKPNETFIMFQRWISGHDL 435          
BLAST of FC872458 vs. ExPASy Swiss-Prot
Match: SCP9_ARATH (Serine carboxypeptidase-like 9 OS=Arabidopsis thaliana GN=SCPL9 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.202e-13
Identity = 35/70 (50.00%), Postives = 44/70 (62.86%), Query Frame = 2
Query:    5 WIKSLNLTIETGWQPWLVESQVAGYWYRYKGKNNYHLTFATVKGAGHTGPEYKPKECLAMIDRWFASYPL 214
            WIKSLN +I   W+PW+++ Q+AGY   Y  K    +TFATVKG GHT  EY P+E   M  RW +  PL
Sbjct:  373 WIKSLNYSIIDDWRPWMIKGQIAGYTRTYSNK----MTFATVKGGGHTA-EYLPEESSIMFQRWISGQPL 437          
BLAST of FC872458 vs. ExPASy Swiss-Prot
Match: SCP7_ARATH (Serine carboxypeptidase-like 7 OS=Arabidopsis thaliana GN=SCPL7 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.202e-13
Identity = 33/70 (47.14%), Postives = 44/70 (62.86%), Query Frame = 2
Query:    5 WIKSLNLTIETGWQPWLVESQVAGYWYRYKGKNNYHLTFATVKGAGHTGPEYKPKECLAMIDRWFASYPL 214
            WI+SLN ++   W+PW++  Q+AGY   Y  K    + FAT+KG GHT PEYKP+E   M  RW +  PL
Sbjct:  373 WIRSLNYSLIDDWRPWMIGDQIAGYTRTYANK----MAFATIKGGGHT-PEYKPEESYIMFQRWISGQPL 437          
BLAST of FC872458 vs. ExPASy Swiss-Prot
Match: CBP1_HORVU (Serine carboxypeptidase 1 OS=Hordeum vulgare GN=CBP1 PE=1 SV=4)

HSP 1 Score: 74.3294 bits (181), Expect = 2.202e-13
Identity = 34/70 (48.57%), Postives = 42/70 (60.00%), Query Frame = 2
Query:    5 WIKSLNLTIETGWQPWLVESQVAGYWYRYKGKNNYHLTFATVKGAGHTGPEYKPKECLAMIDRWFASYPL 214
            W KSL   +   W+PW+   QV+GY   Y+    + LTFAT+KGAGHT PEYKP+E  A   RW A   L
Sbjct:  434 WTKSLGYGVVDSWRPWITNGQVSGYTEGYE----HGLTFATIKGAGHTVPEYKPQEAFAFYSRWLAGSKL 499          
BLAST of FC872458 vs. ExPASy Swiss-Prot
Match: SCP18_ARATH (Serine carboxypeptidase-like 18 OS=Arabidopsis thaliana GN=SCPL18 PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 2.876e-13
Identity = 35/70 (50.00%), Postives = 43/70 (61.43%), Query Frame = 2
Query:    5 WIKSLNLTIETGWQPWLVESQVAGYWYRYKGKNNYHLTFATVKGAGHTGPEYKPKECLAMIDRWFASYPL 214
            WIKSLN +I   W+PW V +QV GY   Y      ++TFAT+KG GHT  EYKP+E   M  RW +  PL
Sbjct:  400 WIKSLNYSITDDWRPWFVNNQVIGYTRTYAN----NMTFATIKGGGHTA-EYKPEESFMMFQRWISGRPL 464          
BLAST of FC872458 vs. ExPASy Swiss-Prot
Match: SCP10_ARATH (Serine carboxypeptidase-like 10 OS=Arabidopsis thaliana GN=SCPL10 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.876e-13
Identity = 35/70 (50.00%), Postives = 42/70 (60.00%), Query Frame = 2
Query:    5 WIKSLNLTIETGWQPWLVESQVAGYWYRYKGKNNYHLTFATVKGAGHTGPEYKPKECLAMIDRWFASYPL 214
            WIKSLN +I   W+PW++  Q+AGY   Y  K    +TFATVKG GHT  EY P E   M  RW +  PL
Sbjct:  373 WIKSLNYSIVDDWRPWMINDQIAGYTRTYSNK----MTFATVKGGGHTA-EYLPNESSIMFQRWISGQPL 437          
BLAST of FC872458 vs. ExPASy Swiss-Prot
Match: CBP1_ORYSJ (Serine carboxypeptidase 1 OS=Oryza sativa subsp. japonica GN=CBP1 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.406e-13
Identity = 34/70 (48.57%), Postives = 43/70 (61.43%), Query Frame = 2
Query:    5 WIKSLNLTIETGWQPWLVESQVAGYWYRYKGKNNYHLTFATVKGAGHTGPEYKPKECLAMIDRWFASYPL 214
            W +SL   +   W+PW +  QV+GY   Y+    + LTFAT+KGAGHT PEYKP+E LA   RW A   L
Sbjct:  445 WTRSLGYGVIDSWRPWHLNGQVSGYTQGYE----HGLTFATIKGAGHTVPEYKPQESLAFYSRWLAGSKL 510          
BLAST of FC872458 vs. ExPASy Swiss-Prot
Match: SCP6_ARATH (Serine carboxypeptidase-like 6 OS=Arabidopsis thaliana GN=SCPL6 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.367e-13
Identity = 35/64 (54.69%), Postives = 40/64 (62.50%), Query Frame = 2
Query:    5 WIKSLNLTIETGWQPWLVESQVAGYWYRYKGKNNYHLTFATVKGAGHTGPEYKPKECLAMIDRW 196
            WIKSLN  I   W+PW++ +QVAGY   Y  K    +TFATVKG GHT  EYKP E   M  RW
Sbjct:  377 WIKSLNYAIVDKWRPWMINNQVAGYTRTYANK----MTFATVKGGGHTA-EYKPDETFIMFQRW 435          
The following BLAST results are available for this feature:
BLAST of FC872458 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
SCP17_ARATH1.991e-1454.29Serine carboxypeptidase-like 17 OS=Arabidopsis tha... [more]
SCP13_ARATH1.991e-1450.00Serine carboxypeptidase-like 13 OS=Arabidopsis tha... [more]
SCP12_ARATH1.291e-1350.00Serine carboxypeptidase-like 12 OS=Arabidopsis tha... [more]
SCP9_ARATH2.202e-1350.00Serine carboxypeptidase-like 9 OS=Arabidopsis thal... [more]
SCP7_ARATH2.202e-1347.14Serine carboxypeptidase-like 7 OS=Arabidopsis thal... [more]
CBP1_HORVU2.202e-1348.57Serine carboxypeptidase 1 OS=Hordeum vulgare GN=CB... [more]
SCP18_ARATH2.876e-1350.00Serine carboxypeptidase-like 18 OS=Arabidopsis tha... [more]
SCP10_ARATH2.876e-1350.00Serine carboxypeptidase-like 10 OS=Arabidopsis tha... [more]
CBP1_ORYSJ6.406e-1348.57Serine carboxypeptidase 1 OS=Oryza sativa subsp. j... [more]
SCP6_ARATH8.367e-1354.69Serine carboxypeptidase-like 6 OS=Arabidopsis thal... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1BG01ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB1BG01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872458 ID=FC872458; Name=FC872458; organism=Citrus clementina; type=EST; length=427bp
GGGATGGATAAAGTCATTAAACTTGACGATTGAAACTGGCTGGCAGCCGT
GGTTGGTGGAAAGTCAAGTTGCAGGATATTGGTACCGTTACAAGGGAAAG
AACAATTATCATTTGACATTTGCCACAGTAAAGGGAGCAGGTCATACAGG
TCCAGAGTACAAGCCTAAGGAATGTCTTGCAATGATCGACAGGTGGTTCG
CATCCTATCCTCTCTAGAGCCACGTTCATATAATTATTAAGTTTTCGAGA
TTGAAAAATAAATGTGGAAGTTAAGTGGCTGATGGCGTTGTAAACACCGA
TGAAATTATTTATGTTTGGCTTTACCAAACTTATGATCTGAAAAACTAGT
ATTGCAAGAGCCTTGATGCTCCTATTTGCTTTTTTAAAAATGTCGCTCCA
AAAAAAAAAAAAAAAAAAAAAAAAAAA
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