FC872460

Overview
NameFC872460
Unique NameFC872460
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC872460_ssr531 microsatellite FC872460_ssr531:531..542. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9835 contig Ccv1_Contig9835:2..678. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872460 vs. ExPASy Swiss-Prot
Match: PR4A_TOBAC (Pathogenesis-related protein PR-4A OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 6.597e-50
Identity = 87/114 (76.32%), Postives = 97/114 (85.09%), Query Frame = 3
Query:  129 TYHLYHPEQIGWDLTAASAFCATWDANKPLAWRQKYGWTAFCHSGGPIGQTACGRCLRVTNSGTGAQQIVRIVDQCANGGLNLDEGVYKKLDTNGIGYQQGFLTVTYEFVNSND 470
            TYHLY+P+ I WDL AASAFCATWDA+KPLAWRQKYGWTAFC   GP GQ +CGRCLRVTN+GTG Q  VRIVDQC+NGGL+LD  V+ +LDTNG+GYQQG LTV YEFVN ND
Sbjct:   34 TYHLYNPQNINWDLRAASAFCATWDADKPLAWRQKYGWTAFCGPAGPRGQDSCGRCLRVTNTGTGTQTTVRIVDQCSNGGLDLDVNVFNQLDTNGVGYQQGHLTVNYEFVNCND 147          
BLAST of FC872460 vs. ExPASy Swiss-Prot
Match: PR4B_TOBAC (Pathogenesis-related protein PR-4B OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.276e-49
Identity = 86/114 (75.44%), Postives = 96/114 (84.21%), Query Frame = 3
Query:  129 TYHLYHPEQIGWDLTAASAFCATWDANKPLAWRQKYGWTAFCHSGGPIGQTACGRCLRVTNSGTGAQQIVRIVDQCANGGLNLDEGVYKKLDTNGIGYQQGFLTVTYEFVNSND 470
            TYHLY+P+ I WDL AASAFCATWDA+KPLAWRQKYGWTAFC   GP GQ +CGRCLRVTN+GTG Q  VRIVDQC+NGGL+LD  V+ +LDTNG+GYQQG L V YEFVN ND
Sbjct:   34 TYHLYNPQNINWDLRAASAFCATWDADKPLAWRQKYGWTAFCGPAGPRGQDSCGRCLRVTNTGTGTQATVRIVDQCSNGGLDLDVNVFNQLDTNGLGYQQGHLIVNYEFVNCND 147          
BLAST of FC872460 vs. ExPASy Swiss-Prot
Match: PRP2_SOLLC (Pathogenesis-related protein P2 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 3.746e-45
Identity = 77/111 (69.37%), Postives = 91/111 (81.98%), Query Frame = 3
Query:  129 TYHLYHPEQIGWDLTAASAFCATWDANKPLAWRQKYGWTAFCHSGGPIGQTACGRCLRVTNSGTGAQQIVRIVDQCANGGLNLDEGVYKKLDTNGIGYQQGFLTVTYEFVN 461
            TYHLY+P+ I WDL  AS +CATWDA+KPL WR++YGWTAFC   GP GQ +CGRCLRVTN+GTG Q+ VRIVDQC NGGL+LD  V+ +LDTNG+GYQ+G L V YEFVN
Sbjct:   32 TYHLYNPQNINWDLRTASVYCATWDADKPLEWRRRYGWTAFCGPAGPTGQASCGRCLRVTNTGTGTQETVRIVDQCRNGGLDLDVNVFNRLDTNGLGYQRGNLNVNYEFVN 142          
BLAST of FC872460 vs. ExPASy Swiss-Prot
Match: WIN2_SOLTU (Wound-induced protein WIN2 OS=Solanum tuberosum GN=WIN2 PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.055e-43
Identity = 74/114 (64.91%), Postives = 93/114 (81.58%), Query Frame = 3
Query:  129 TYHLYHPEQIGWDLTAASAFCATWDANKPLAWRQKYGWTAFCHSGGPIGQTACGRCLRVTNSGTGAQQIVRIVDQCANGGLNLDEGVYKKLDTNGIGYQQGFLTVTYEFVNSND 470
            TYH+Y+P+ +GWDL A SA+C+TWDANKP AWR KYGWTAFC   GP G+ +CG+CLRVTN+ TGAQ  VRIVDQC+NGGL+LD  V++++DT+G+G QQG L V Y+FVN  D
Sbjct:   85 TYHIYNPQNVGWDLNAVSAYCSTWDANKPYAWRSKYGWTAFCGPVGPRGRDSCGKCLRVTNTRTGAQTTVRIVDQCSNGGLDLDINVFQQIDTDGVGNQQGHLIVNYQFVNCGD 198          
BLAST of FC872460 vs. ExPASy Swiss-Prot
Match: WIN1_SOLTU (Wound-induced protein WIN1 OS=Solanum tuberosum GN=WIN1 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 3.876e-42
Identity = 72/114 (63.16%), Postives = 93/114 (81.58%), Query Frame = 3
Query:  129 TYHLYHPEQIGWDLTAASAFCATWDANKPLAWRQKYGWTAFCHSGGPIGQTACGRCLRVTNSGTGAQQIVRIVDQCANGGLNLDEGVYKKLDTNGIGYQQGFLTVTYEFVNSND 470
            TYH+Y+P+ +GWDL A SA+C+TWDANKPL+WR+KYGWTAFC   GP G+ +CG+CLRVTN+ TGAQ  VRIVDQC+NGGL+LD  V++++DT+G G  QG L V Y+FV+  D
Sbjct:   86 TYHIYNPQNVGWDLNAVSAYCSTWDANKPLSWRKKYGWTAFCGPVGPRGRDSCGKCLRVTNTRTGAQTTVRIVDQCSNGGLDLDVNVFRQIDTDGNGNHQGHLIVNYQFVDCGD 199          
BLAST of FC872460 vs. ExPASy Swiss-Prot
Match: HEVE_HEVBR (Pro-hevein OS=Hevea brasiliensis GN=HEV1 PE=1 SV=2)

HSP 1 Score: 169.474 bits (428), Expect = 1.473e-41
Identity = 72/114 (63.16%), Postives = 93/114 (81.58%), Query Frame = 3
Query:  129 TYHLYHPEQIGWDLTAASAFCATWDANKPLAWRQKYGWTAFCHSGGPIGQTACGRCLRVTNSGTGAQQIVRIVDQCANGGLNLDEGVYKKLDTNGIGYQQGFLTVTYEFVNSND 470
            TYHLY+ +  GWDL AASA+C+TWDANKP +WR KYGWTAFC   G  GQ++CG+CL VTN+GTGA+  VRIVDQC+NGGL+LD  V+++LDT+G GY++G +TV Y+FV+  D
Sbjct:   76 TYHLYNSQDHGWDLNAASAYCSTWDANKPYSWRSKYGWTAFCGPVGAHGQSSCGKCLSVTNTGTGAKTTVRIVDQCSNGGLDLDVNVFRQLDTDGKGYERGHITVNYQFVDCGD 189          
BLAST of FC872460 vs. ExPASy Swiss-Prot
Match: BARW_HORVU (Barwin OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.473e-41
Identity = 79/117 (67.52%), Postives = 89/117 (76.07%), Query Frame = 3
Query:  129 TYHLYHPEQIGWDL--TAASAFCATWDANKPLAWRQKYGWTAFCHSGGPIGQTACGRCLRVTNSGTGAQQIVRIVDQCANGGLNLD-EGVYKKLDTNGIGYQQGFLTVTYEFVNSND 470
            TYH Y P Q  WDL   A SA+CATWDA+KPL+WR KYGWTAFC   GP GQ ACG+CLRVTN  TGAQ   RIVDQCANGGL+LD + V+ K+DTNGIGYQQG L V Y+FV+  D
Sbjct:    9 TYHYYRPAQNNWDLGAPAVSAYCATWDASKPLSWRSKYGWTAFCGPAGPRGQAACGKCLRVTNPATGAQITARIVDQCANGGLDLDWDTVFTKIDTNGIGYQQGHLNVNYQFVDCRD 125          
BLAST of FC872460 vs. ExPASy Swiss-Prot
Match: WHW2_WHEAT (Wheatwin-2 OS=Triticum aestivum GN=PR4B PE=1 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.247e-40
Identity = 78/117 (66.67%), Postives = 88/117 (75.21%), Query Frame = 3
Query:  129 TYHLYHPEQIGWDL--TAASAFCATWDANKPLAWRQKYGWTAFCHSGGPIGQTACGRCLRVTNSGTGAQQIVRIVDQCANGGLNLD-EGVYKKLDTNGIGYQQGFLTVTYEFVNSND 470
            TYH Y P Q  WDL   A SA+CATWDA+KPL+WR KYGWTAFC   G  GQ ACG+CLRVTN  TGAQ   RIVDQCANGGL+LD + V+ K+DTNGIGYQQG L V Y+FV+  D
Sbjct:   32 TYHYYRPAQNNWDLGAPAVSAYCATWDASKPLSWRSKYGWTAFCGPAGAHGQAACGKCLRVTNPATGAQITARIVDQCANGGLDLDWDTVFTKIDTNGIGYQQGHLNVNYQFVDCRD 148          
BLAST of FC872460 vs. ExPASy Swiss-Prot
Match: WHW1_WHEAT (Wheatwin-1 OS=Triticum aestivum GN=PR4A PE=1 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 8.083e-40
Identity = 76/117 (64.96%), Postives = 88/117 (75.21%), Query Frame = 3
Query:  129 TYHLYHPEQIGWDL--TAASAFCATWDANKPLAWRQKYGWTAFCHSGGPIGQTACGRCLRVTNSGTGAQQIVRIVDQCANGGLNLD-EGVYKKLDTNGIGYQQGFLTVTYEFVNSND 470
            TYH Y P Q  WDL   A SA+CATWDA+KPL+WR KYGWTAFC   G  GQ +CG+CL+VTN  TGAQ   RIVDQCANGGL+LD + V+ K+DTNGIGYQQG L V Y+FV+  D
Sbjct:   30 TYHYYRPAQNNWDLGAPAVSAYCATWDASKPLSWRSKYGWTAFCGPAGAHGQASCGKCLQVTNPATGAQITARIVDQCANGGLDLDWDTVFTKIDTNGIGYQQGHLNVNYQFVDCRD 146          
BLAST of FC872460 vs. ExPASy Swiss-Prot
Match: HEVL_ARATH (Hevein-like protein OS=Arabidopsis thaliana GN=HEL PE=1 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.011e-39
Identity = 69/111 (62.16%), Postives = 85/111 (76.58%), Query Frame = 3
Query:  129 TYHLYHPEQIGWDLTAASAFCATWDANKPLAWRQKYGWTAFCHSGGPIGQTACGRCLRVTNSGTGAQQIVRIVDQCANGGLNLDEGVYKKLDTNGIGYQQGFLTVTYEFVN 461
            TYH Y+P Q  WDL A SA+C+TWDA+KP AWR KYGWTAFC   GP GQ +CG+CLRV N+ T A   VRIVDQC+NGGL+LD  ++ ++DT+G GYQQG L V Y+FV+
Sbjct:   80 TYHFYNPAQNNWDLRAVSAYCSTWDADKPYAWRSKYGWTAFCGPAGPRGQASCGKCLRVKNTRTNAAVTVRIVDQCSNGGLDLDVAMFNQIDTDGFGYQQGHLIVDYQFVD 190          
The following BLAST results are available for this feature:
BLAST of FC872460 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
PR4A_TOBAC6.597e-5076.32Pathogenesis-related protein PR-4A OS=Nicotiana ta... [more]
PR4B_TOBAC4.276e-4975.44Pathogenesis-related protein PR-4B OS=Nicotiana ta... [more]
PRP2_SOLLC3.746e-4569.37Pathogenesis-related protein P2 OS=Solanum lycoper... [more]
WIN2_SOLTU2.055e-4364.91Wound-induced protein WIN2 OS=Solanum tuberosum GN... [more]
WIN1_SOLTU3.876e-4263.16Wound-induced protein WIN1 OS=Solanum tuberosum GN... [more]
HEVE_HEVBR1.473e-4163.16Pro-hevein OS=Hevea brasiliensis GN=HEV1 PE=1 SV=2[more]
BARW_HORVU1.473e-4167.52Barwin OS=Hordeum vulgare PE=1 SV=1[more]
WHW2_WHEAT1.247e-4066.67Wheatwin-2 OS=Triticum aestivum GN=PR4B PE=1 SV=1[more]
WHW1_WHEAT8.083e-4064.96Wheatwin-1 OS=Triticum aestivum GN=PR4A PE=1 SV=1[more]
HEVL_ARATH4.011e-3962.16Hevein-like protein OS=Arabidopsis thaliana GN=HEL... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1BG03ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB1BG03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872460 ID=FC872460; Name=FC872460; organism=Citrus clementina; type=EST; length=677bp
GGGGAGCGGATAAGTTAAGCTTAGAACATTAAAAGAAAAATATGGGGAGG
TTCGGTCTCTGTGTGATTCTGTCAGTTTGTCTACTGGTGGCAGCTGCTTC
TGCCCAAAGTGCTTCTAATGTGAGAGCCACGTATCATCTCTACCACCCTG
AGCAAATTGGATGGGACTTGACGGCAGCAAGCGCTTTCTGCGCAACATGG
GATGCCAACAAGCCCTTGGCCTGGCGCCAAAAATATGGCTGGACTGCTTT
CTGTCATTCGGGCGGACCCATTGGACAAACTGCTTGTGGCAGGTGCTTAA
GGGTCACAAACAGTGGTACAGGAGCCCAACAAATTGTGAGAATTGTTGAT
CAGTGTGCCAATGGAGGCTTAAATTTGGACGAAGGAGTGTACAAGAAATT
GGACACGAATGGAATAGGCTATCAACAAGGCTTCCTTACTGTCACCTACG
AGTTTGTGAACAGCAATGATTAAAGCACCATCTATAATTCCATGATCAAT
CGAACCTTAATGCTGAAATAGGGTTAATTTATTAATTAATTATCCCTCTA
TATACTTAATTCATAAATAAAATAAAACTTCTGATGAAGTATCAACAACT
GCTCATGGGCACTACAGTTATGTAATAAAAGTTTCCTTTTTTTAAGACGA
AACAAACAAAAAAAAAAAAAAAAAAAA
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