FC872489

Overview
NameFC872489
Unique NameFC872489
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length732
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9963 contig Ccv1_Contig9963:1..733. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872489 vs. ExPASy Swiss-Prot
Match: ERF16_ARATH (Ethylene-responsive transcription factor ERF016 OS=Arabidopsis thaliana GN=ERF016 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.826e-20
Identity = 47/83 (56.63%), Postives = 53/83 (63.86%), Query Frame = 1
Query:  154 RYKGVRMRKWGKWVAEVRQPNSRGRIWLGSYKTXXXXXXXXXXXVVCLRGSSATLNFPDNPPEIPLADEMTPVQIQEFAFRHA 402
            +Y GVR RKWGKWVAE+R PNSR RIWLGS+ +           + CLRG  A  NFPDNPPEIP    +TP QIQ  A R A
Sbjct:    6 KYTGVRKRKWGKWVAEIRLPNSRDRIWLGSFDSAEKAARAFDAALYCLRGPGARFNFPDNPPEIPGGRSLTPQQIQVVASRFA 88          
BLAST of FC872489 vs. ExPASy Swiss-Prot
Match: ERF18_ARATH (Ethylene-responsive transcription factor ERF018 OS=Arabidopsis thaliana GN=ERF018 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.403e-19
Identity = 45/83 (54.22%), Postives = 53/83 (63.86%), Query Frame = 1
Query:  154 RYKGVRMRKWGKWVAEVRQPNSRGRIWLGSYKTXXXXXXXXXXXVVCLRGSSATLNFPDNPPEIPLADEMTPVQIQEFAFRHA 402
            +YKGVR RKWGKWV+E+R P+SR RIWLGSY T             CLRG  A  NFP+NPP I +   +TP +IQE A R A
Sbjct:   20 KYKGVRKRKWGKWVSEIRLPHSRERIWLGSYDTPEKAARAFDAAQFCLRGGDANFNFPNNPPSISVEKSLTPPEIQEAAARFA 102          
BLAST of FC872489 vs. ExPASy Swiss-Prot
Match: ERF17_ARATH (Ethylene-responsive transcription factor ERF017 OS=Arabidopsis thaliana GN=ERF017 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.124e-19
Identity = 47/98 (47.96%), Postives = 57/98 (58.16%), Query Frame = 1
Query:  130 GGREGNNGRYKGVRMRKWGKWVAEVRQPNSRGRIWLGSYKTXXXXXXXXXXXVVCLRGSSATLNFPDNPPEIPLADEMTPVQIQEFAFRHARRAPAQS 423
            G       +YKGVR RKWGKWV+E+R PNSR RIWLGSY T           + CLRG++A  NFPDNPP I     ++  +I+E A R A  A   S
Sbjct:    3 GSSSSMQSKYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDTPEKAARAFDAALYCLRGNNAKFNFPDNPPVISGGRNLSRSEIREAAARFANSAEDDS 100          
BLAST of FC872489 vs. ExPASy Swiss-Prot
Match: RAP29_ARATH (Ethylene-responsive transcription factor RAP2-9 OS=Arabidopsis thaliana GN=RAP2-9 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.515e-17
Identity = 51/112 (45.54%), Postives = 61/112 (54.46%), Query Frame = 1
Query:  145 NNGRYKGVRMRKWGKWVAEVRQPNSRGRIWLGSYKTXXXXXXXXXXXVVCLRGSSATLNFP-----DNPPEIPLADEMTPVQIQEFAFRHARRAPAQ------SVEDLGSNE 447
            N  RYKG+RMRKWGKWVAE+R+PN R RIWLGSYKT           V  LRG SA LNFP     D      L  +M+P  I++ A     R  A+       VE+L  N+
Sbjct:   32 NEKRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYKTAVAAARAYDTAVFYLRGPSARLNFPEEVFKDGNGGEGLGGDMSPTLIRKKAAEVGARVDAELRLENRMVENLDMNK 143          
BLAST of FC872489 vs. ExPASy Swiss-Prot
Match: ERF10_ARATH (Ethylene-responsive transcription factor ERF010 OS=Arabidopsis thaliana GN=ERF010 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.098e-15
Identity = 37/68 (54.41%), Postives = 44/68 (64.71%), Query Frame = 1
Query:  157 YKGVRMRKWGKWVAEVRQPNSRGRIWLGSYKTXXXXXXXXXXXVVCLRGSSATLNFPDNPPEIPLADE 360
            YKG+RMRKWGKWVAE+R+PN R R+WLGSY T           V  LRG +A LNFP+  P    +DE
Sbjct:   21 YKGIRMRKWGKWVAEIREPNKRSRLWLGSYSTPEAAARAYDTAVFYLRGPTARLNFPELLPGEKFSDE 88          
BLAST of FC872489 vs. ExPASy Swiss-Prot
Match: ERF11_ARATH (Ethylene-responsive transcription factor ERF011 OS=Arabidopsis thaliana GN=ERF011 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.964e-15
Identity = 39/78 (50.00%), Postives = 51/78 (65.38%), Query Frame = 1
Query:  157 YKGVRMRKWGKWVAEVRQPNSRGRIWLGSYKTXXXXXXXXXXXVVCLRGSSATLNFPDNPPEIPLADEMTPVQIQEFA 390
            +KG+RMRKWGKWVAE+R+PN R R+WLGSY T           V  LRG +ATLNFP+  P    A++M+   I++ A
Sbjct:   21 FKGIRMRKWGKWVAEIREPNKRSRLWLGSYSTPEAAARAYDTAVFYLRGPTATLNFPELLP-CTSAEDMSAATIRKKA 97          
BLAST of FC872489 vs. ExPASy Swiss-Prot
Match: ERF08_ARATH (Ethylene-responsive transcription factor ERF008 OS=Arabidopsis thaliana GN=ERF008 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.964e-15
Identity = 38/67 (56.72%), Postives = 44/67 (65.67%), Query Frame = 1
Query:  130 GGREGNNGRYKGVRMRKWGKWVAEVRQPNSRGRIWLGSYKTXXXXXXXXXXXVVCLRGSSATLNFPD 330
            G R+ +   YKG+RMRKWGKWVAE+R+PN R RIWLGSY T           V  LRG SA LNFP+
Sbjct:   19 GTRKRDLKPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYATPEAAARAYDTAVFYLRGPSARLNFPE 85          
BLAST of FC872489 vs. ExPASy Swiss-Prot
Match: RA210_ARATH (Ethylene-responsive transcription factor RAP2-10 OS=Arabidopsis thaliana GN=RAP2-10 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.040e-14
Identity = 36/58 (62.07%), Postives = 40/58 (68.97%), Query Frame = 1
Query:  157 YKGVRMRKWGKWVAEVRQPNSRGRIWLGSYKTXXXXXXXXXXXVVCLRGSSATLNFPD 330
            YKG+RMRKWGKWVAE+R+PN R RIWLGSY T           V  LRG SA LNFP+
Sbjct:   30 YKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPEAAARAYDTAVFYLRGPSARLNFPE 87          
BLAST of FC872489 vs. ExPASy Swiss-Prot
Match: DREB3_ARATH (Dehydration-responsive element-binding protein 3 OS=Arabidopsis thaliana GN=DREB3 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.952e-14
Identity = 36/98 (36.73%), Postives = 53/98 (54.08%), Query Frame = 1
Query:  130 GGREGNNGRYKGVRMRKWGKWVAEVRQPNSRGRIWLGSYKTXXXXXXXXXXXVVCLRGSSATLNFPDNPPEIPLADEMTPVQIQEFAFRHARRAPAQS 423
            G   G +  Y+GVRMR WGKWV+E+R+P  + RIWLG++ T            + ++G++A LNFP+     P    ++P  IQ  A + A   P  S
Sbjct:   42 GRDSGKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGTAAILNFPELADSFPRPVSLSPRDIQTAALKAAHMEPTTS 139          
BLAST of FC872489 vs. ExPASy Swiss-Prot
Match: RAP21_ARATH (Ethylene-responsive transcription factor RAP2-1 OS=Arabidopsis thaliana GN=RAP2-1 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.805e-14
Identity = 34/58 (58.62%), Postives = 39/58 (67.24%), Query Frame = 1
Query:  157 YKGVRMRKWGKWVAEVRQPNSRGRIWLGSYKTXXXXXXXXXXXVVCLRGSSATLNFPD 330
            Y+G+R RKWGKWVAE+R+PN R R+WLGSY T           V  LRG SA LNFPD
Sbjct:   31 YRGIRRRKWGKWVAEIREPNKRSRLWLGSYTTDIAAARAYDVAVFYLRGPSARLNFPD 88          
The following BLAST results are available for this feature:
BLAST of FC872489 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
ERF16_ARATH2.826e-2056.63Ethylene-responsive transcription factor ERF016 OS... [more]
ERF18_ARATH1.403e-1954.22Ethylene-responsive transcription factor ERF018 OS... [more]
ERF17_ARATH3.124e-1947.96Ethylene-responsive transcription factor ERF017 OS... [more]
RAP29_ARATH6.515e-1745.54Ethylene-responsive transcription factor RAP2-9 OS... [more]
ERF10_ARATH6.098e-1554.41Ethylene-responsive transcription factor ERF010 OS... [more]
ERF11_ARATH7.964e-1550.00Ethylene-responsive transcription factor ERF011 OS... [more]
ERF08_ARATH7.964e-1556.72Ethylene-responsive transcription factor ERF008 OS... [more]
RA210_ARATH1.040e-1462.07Ethylene-responsive transcription factor RAP2-10 O... [more]
DREB3_ARATH3.952e-1436.73Dehydration-responsive element-binding protein 3 O... [more]
RAP21_ARATH8.805e-1458.62Ethylene-responsive transcription factor RAP2-1 OS... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3AE03ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3AE03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872489 ID=FC872489; Name=FC872489; organism=Citrus clementina; type=EST; length=732bp
GGGGATTCTGCTTCCGTCTCTTAATTCTCCATCTCCACGTCCGCTGACAA
AATCGGTTTATTTTAAAGCCGAAAGCCGGTGCTTGCTTTGCATTAAAGGA
AATAATTTCCAATTATGGTGAGGCCGAGCGGCGGAAGAGAAGGCAATAAC
GGGAGATACAAGGGAGTGAGGATGCGGAAGTGGGGCAAATGGGTGGCGGA
AGTTCGGCAACCTAACAGCAGAGGCAGAATTTGGTTGGGTTCTTACAAGA
CGGCGGACGAAGCTGCTAGAGCGTACGATGCGGCTGTCGTTTGCTTACGT
GGATCCTCCGCGACGCTCAATTTCCCCGATAACCCCCCGGAGATTCCGTT
GGCGGATGAAATGACGCCAGTCCAGATTCAGGAATTTGCGTTTCGGCATG
CCCGAAGGGCTCCGGCCCAATCGGTGGAGGATTTAGGATCTAATGAGGCG
GCTGTCGTTTCCGCTTCAGGTTCTAGTAGCGGTTACGGAGTTGATGATGT
GGGCGTCGATGGGGCATTCTATCAGTCACCTGGTCTGTGGACCTTTTGAG
GTTGTTTATTTGTTTATTTATTTTTTAAATTAACAAAAAAAACTTGATAG
ATTACGGAGTAAAGGGTTGTTTTTGTAAAGTTTAAAGTGTTCTACTTGCA
AATTCGACGAATGTTTGTATTTTAACTAAACTTTTGAGATGCCACCTGCT
TTTGTCTGTAGGAATAAATTTTTGGGTAATGT
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