FC872490

Overview
NameFC872490
Unique NameFC872490
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length604
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig105 contig Ccv1_Contig105:220..823. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872490 vs. ExPASy Swiss-Prot
Match: DCS3_GOSAR ((+)-delta-cadinene synthase isozyme A OS=Gossypium arboreum GN=CAD1-A PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 9.100e-18
Identity = 52/130 (40.00%), Postives = 71/130 (54.62%), Query Frame = 3
Query:    6 TKDNFLCILKNAKSLKATDIIGRLMDDIAGYKFEQKRGHNPSAVECYKNQHGVSXXXXXXXXXXXXXNSWKDINEELLNPTTVPLPMLQRLLYFARSGHFIYDDGHDRYTH-SLMMKRQVALLLTEPLAI 392
            T + F     + K +KA+ II R MDDIA +KF  +R  + SA+ECY  Q+GV+             +SWKD+NEE L PT +P P+L R L  AR    +Y +G D YTH     K  +  LL +P+ I
Sbjct:  427 TPETFKWAASDPKIIKASTIICRFMDDIAEHKFNHRREDDCSAIECYMKQYGVTAQEAYNEFNKHIESSWKDVNEEFLKPTEMPTPVLCRSLNLARVMDVLYREG-DGYTHVGKAAKGGITSLLIDPIQI 555          
BLAST of FC872490 vs. ExPASy Swiss-Prot
Match: HUMS_ARATH (Alpha-humulene/(-)-(E)-beta-caryophyllene synthase OS=Arabidopsis thaliana GN=TPS21 PE=2 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.112e-15
Identity = 45/130 (34.62%), Postives = 67/130 (51.54%), Query Frame = 3
Query:    3 ATKDNFLCILKNAKSLKATDIIGRLMDDIAGYKFEQKRGHNPSAVECYKNQHGVSXXXXXXXXXXXXXNSWKDINEELLNPTTVPLPMLQRLLYFARSGHFIYDDGHDRYTHSLMMKRQVALLLTEPLAI 392
            A  D F  +  + K   A++II R  DDI+ Y+FE KR H  + ++CY  Q GVS             ++WKD+N+EL+ P   P P+L R+L  +R     Y    D YT+  ++K  +  LL E + I
Sbjct:  419 AKLDAFEWLSSHPKIRVASEIISRFTDDISSYEFEHKREHVATGIDCYMQQFGVSKERAVEVMGNIVSDAWKDLNQELMRPHVFPFPLLMRVLNLSRVIDVFY-RYQDAYTNPKLLKEHIVSLLIETIPI 547          
BLAST of FC872490 vs. ExPASy Swiss-Prot
Match: DCS1_GOSAR ((+)-delta-cadinene synthase isozyme XC1 OS=Gossypium arboreum PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.453e-15
Identity = 46/130 (35.38%), Postives = 72/130 (55.38%), Query Frame = 3
Query:    6 TKDNFLCILKNAKSLKATDIIGRLMDDIAGYKFEQKRGHNPSAVECYKNQHGVSXXXXXXXXXXXXXNSWKDINEELLNPTTVPLPMLQRLLYFARSGHFIYDDGHDRYTH-SLMMKRQVALLLTEPLAI 392
            T + F     + K ++A+ II R MDD+A +KF+ +R  + SA+ECY  ++GV+             ++WKD+N+E L PT +P  +L R L  AR    +Y +G D YT+     K  +  LL EP+A+
Sbjct:  426 TPETFKWAASDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYMEEYGVTAQEAYDVFNKHVESAWKDLNQEFLKPTEMPTEVLNRSLNLARVMDVLYREG-DGYTYVGKAAKGGITSLLIEPIAL 554          
BLAST of FC872490 vs. ExPASy Swiss-Prot
Match: DCS2_GOSAR ((+)-delta-cadinene synthase isozyme XC14 OS=Gossypium arboreum PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.898e-15
Identity = 46/130 (35.38%), Postives = 72/130 (55.38%), Query Frame = 3
Query:    6 TKDNFLCILKNAKSLKATDIIGRLMDDIAGYKFEQKRGHNPSAVECYKNQHGVSXXXXXXXXXXXXXNSWKDINEELLNPTTVPLPMLQRLLYFARSGHFIYDDGHDRYTH-SLMMKRQVALLLTEPLAI 392
            T + F     + K ++A+ II R MDD+A +KF+ +R  + SA+ECY  ++GV+             ++WKD+N+E L PT +P  +L R L  AR    +Y +G D YT+     K  +  LL EP+A+
Sbjct:  426 TPETFKWAANDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYMEEYGVTAQEAYDVFNKHVESAWKDVNKEFLKPTEMPTEVLNRSLNLARVMDVLYREG-DGYTYVGKAAKGGITSLLIEPVAL 554          
BLAST of FC872490 vs. ExPASy Swiss-Prot
Match: DCS4_GOSAR ((+)-delta-cadinene synthase isozyme C2 OS=Gossypium arboreum GN=CAD1-C2 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.478e-15
Identity = 46/130 (35.38%), Postives = 71/130 (54.62%), Query Frame = 3
Query:    6 TKDNFLCILKNAKSLKATDIIGRLMDDIAGYKFEQKRGHNPSAVECYKNQHGVSXXXXXXXXXXXXXNSWKDINEELLNPTTVPLPMLQRLLYFARSGHFIYDDGHDRYTH-SLMMKRQVALLLTEPLAI 392
            T + F     + K ++A+ II R MDD+A +KF+ +R  + SA+ECY  ++GVS             ++WKD+N+E   PT +P  +L R L  AR    +Y +G D YT+     K  +  LL EP+A+
Sbjct:  426 TPETFKWAANDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYMEEYGVSAQEAYDVFNKHVESAWKDVNQEFQKPTEMPTEVLNRSLNLARVMDVLYREG-DGYTYVGKAAKGGITSLLIEPIAL 554          
BLAST of FC872490 vs. ExPASy Swiss-Prot
Match: DCS1_GOSHI ((+)-delta-cadinene synthase OS=Gossypium hirsutum GN=CDN1 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.098e-14
Identity = 44/130 (33.85%), Postives = 70/130 (53.85%), Query Frame = 3
Query:    6 TKDNFLCILKNAKSLKATDIIGRLMDDIAGYKFEQKRGHNPSAVECYKNQHGVSXXXXXXXXXXXXXNSWKDINEELLNPTTVPLPMLQRLLYFARSGHFIYDDGHDRYTH-SLMMKRQVALLLTEPLAI 392
            T + F     + K ++A+ II R MDD+  +KF+ +R  + SA+ECY  ++GV+             ++WKD+N+  L PT +P  +L R L  AR    +Y +G D YT+     K  +  LL EP+A+
Sbjct:  426 TPETFKWAANDPKIIQASTIICRFMDDVTEHKFKHRREDDCSAIECYMEEYGVTAQEAYDVFNKHVESAWKDVNQGFLKPTEMPTEVLNRSLNLARVMDVLYREG-DGYTYVGKAAKGGITSLLIEPIAL 554          
BLAST of FC872490 vs. ExPASy Swiss-Prot
Match: 5EAS_TOBAC (Aristolochene synthase OS=Nicotiana tabacum GN=EAS3 PE=1 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 1.360e-13
Identity = 46/131 (35.11%), Postives = 66/131 (50.38%), Query Frame = 3
Query:    3 ATKDNFLCILKNAKSLKATDIIGRLMDDIAGYKFEQKRGHNPSAVECYKNQHGVSXXXXXXXXXXXXXNSWKDINEELLNPTTVPLPMLQRLLYFARSGHFIYDDGHDRYTH-SLMMKRQVALLLTEPLAI 392
            AT+ +F  + KN K L+A+ II R++DD A Y+ E+ RG   + +EC    +G+S              +WKDINE LL PT V    L  +L  AR     Y    D YTH   ++K  +  LL + + I
Sbjct:  418 ATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEKVLKPHIINLLVDSIKI 548          
BLAST of FC872490 vs. ExPASy Swiss-Prot
Match: CASS_RICCO (Casbene synthase, chloroplastic OS=Ricinus communis PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.151e-12
Identity = 43/127 (33.86%), Postives = 65/127 (51.18%), Query Frame = 3
Query:   12 DNFLCILKNAKSLKATDIIGRLMDDIAGYKFEQKRGHNPSAVECYKNQHGVSXXXXXXXXXXXXXNSWKDINEELLNPTTVPLPMLQRLLYFARSGHFIYDDGHDRYTHSLMMKRQVALLLTEPLAI 392
            + F  +  N K   A+    RL++D+  +  EQ+RGH  S ++CY NQHGVS             + WK+INEE +  + V +  L R++  AR     Y  G D YT S  +K+ V  L  +P++I
Sbjct:  476 NEFQWLETNPKLSYASGAFIRLVNDLTSHVTEQQRGHVASCIDCYMNQHGVSKDEAVKILQKMATDCWKEINEECMRQSQVSVGHLMRIVNLARLTDVSYKYG-DGYTDSQQLKQFVKGLFVDPISI 601          
The following BLAST results are available for this feature:
BLAST of FC872490 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
DCS3_GOSAR9.100e-1840.00(+)-delta-cadinene synthase isozyme A OS=Gossypium... [more]
HUMS_ARATH1.112e-1534.62Alpha-humulene/(-)-(E)-beta-caryophyllene synthase... [more]
DCS1_GOSAR1.453e-1535.38(+)-delta-cadinene synthase isozyme XC1 OS=Gossypi... [more]
DCS2_GOSAR1.898e-1535.38(+)-delta-cadinene synthase isozyme XC14 OS=Gossyp... [more]
DCS4_GOSAR2.478e-1535.38(+)-delta-cadinene synthase isozyme C2 OS=Gossypiu... [more]
DCS1_GOSHI2.098e-1433.85(+)-delta-cadinene synthase OS=Gossypium hirsutum ... [more]
5EAS_TOBAC1.360e-1335.11Aristolochene synthase OS=Nicotiana tabacum GN=EAS... [more]
CASS_RICCO1.151e-1233.86Casbene synthase, chloroplastic OS=Ricinus communi... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAB3AE04ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3AE04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872490 ID=FC872490; Name=FC872490; organism=Citrus clementina; type=EST; length=604bp
GGGCAACGAAGGACAATTTTTTATGCATTCTTAAAAACGCTAAGAGTCTT
AAAGCGACAGACATTATTGGCAGGCTCATGGATGACATAGCAGGTTATAA
GTTTGAGCAGAAGAGAGGACATAATCCCTCAGCAGTTGAGTGCTACAAGA
ATCAACATGGCGTCTCCGAGGAAGAGGCAGTTAAAGAGTTGTTGTTAGAA
GTTGCTAACAGTTGGAAAGATATAAATGAGGAGCTTCTCAACCCAACGAC
TGTCCCGTTACCTATGCTTCAACGGCTTCTTTATTTCGCACGTTCAGGCC
ATTTTATCTACGACGATGGTCATGATCGCTACACCCATTCATTGATGATG
AAACGCCAAGTTGCCTTGTTGCTGACGGAACCCCTTGCGATCTGAAGATT
AACGTCATGCTATTGATTTTCCATCGGATATATTTGAGCAGTTGTAATAA
ATGAAGGTCGCGCTGGCTATTTAGCTAGCTACTCATGCCTGGCTAATAAA
TGTGTCGCCAAATAATATGGTTTCAAATTGTGGTCCTTTTAGTTAAAAAA
TTAATAATAAAATATTTTTCTTCTTAAAAAAAAAAAAAAAAAAAAAAAAA
AAAA
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