FC872492

Overview
NameFC872492
Unique NameFC872492
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length913
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC872492_ssr68 microsatellite FC872492_ssr68:68..79. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9965 contig Ccv1_Contig9965:1..913. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872492 vs. ExPASy Swiss-Prot
Match: NUDT2_ARATH (Nudix hydrolase 2 OS=Arabidopsis thaliana GN=NUDT2 PE=1 SV=1)

HSP 1 Score: 336.65 bits (862), Expect = 1.149e-91
Identity = 159/238 (66.81%), Postives = 193/238 (81.09%), Query Frame = 3
Query:  192 LNGINDNYGGVVVQMNEPMDPQLFASLLKSSISHWRQQAKKGVWIKLPIELANLVEPAVKEGFWFHHAEPNYLMLVYWIPGGANTLPANASHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQSFFEKSDIFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPYVQKQELLKYIVDICSAKVDTRGYHGFSPV 905
            L  + D YGGV+ +M  PMDP LF++LL+SS+S W  Q KKGVWIKLP +L  L E AVKEGFWFHHAE +YLMLVYWIP   +TLPANASHRVG+GAFV+N  +EVLVVQE +GRF+G GIWKFPTGVV+EGEDI   +VREVKEET +DTEF ++LAFRQ+H++FF KSD+FF+CML+PLS +I  QESEIEAA+WMP EEY  QP+VQ  ELL+Y+ DICSAK +   Y GF+P+
Sbjct:   20 LPSVQDKYGGVMTEMTHPMDPSLFSTLLRSSLSTWTLQGKKGVWIKLPKQLIGLAETAVKEGFWFHHAEKDYLMLVYWIPKEDDTLPANASHRVGIGAFVINHNKEVLVVQEKTGRFQGQGIWKFPTGVVNEGEDIHDGSVREVKEETGVDTEFDQILAFRQTHKAFFGKSDLFFVCMLKPLSLEINAQESEIEAAQWMPWEEYINQPFVQNYELLRYMTDICSAKTN-GDYEGFTPL 256          
BLAST of FC872492 vs. ExPASy Swiss-Prot
Match: NUD10_ARATH (Nudix hydrolase 10 OS=Arabidopsis thaliana GN=NUDT10 PE=1 SV=1)

HSP 1 Score: 293.508 bits (750), Expect = 1.115e-78
Identity = 142/236 (60.17%), Postives = 175/236 (74.15%), Query Frame = 3
Query:  201 INDNYGGVVVQMNEPMDPQLFASLLKSSISHWRQQAKKGVWIKLPIELANLVEPAVKEGFWFHHAEPNYLMLVYWIPGGANTLPANASHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQSFFEKSDIFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPYVQKQELLKYIVDICSAKVDTRGYHGFSPVP 908
            ++D+YGGV+V+M  PMD + F + L+ S   WR Q KKGVW+ LP+   NLVEPAVKEGF +HHAEP YLMLVYWIP   +T+P NASHRV VGA V+N  +E     E  G   G+GIWK PTGVVDEGE+I  AA+REVKEET IDTEF+E+LAF Q+H+SFF KSD+FF+C+LRP SFDIQKQ+ EIEAA+WM  E+ A+QP   K +L K I  ICS K++ + Y GFS  P
Sbjct:   23 VDDDYGGVIVEMKTPMDTKNFVAALRDSFEQWRLQGKKGVWLNLPLSHVNLVEPAVKEGFRYHHAEPTYLMLVYWIPEAESTIPLNASHRVRVGAVVLNHNKE-----EKYGSLCGSGIWKIPTGVVDEGEEIFAAAIREVKEETGIDTEFLEILAFCQTHESFFAKSDLFFVCLLRPTSFDIQKQDLEIEAAQWMRFEDSASQPITHKNDLFKDIHHICSMKME-KSYSGFSKKP 252          
BLAST of FC872492 vs. ExPASy Swiss-Prot
Match: NUDT7_ARATH (Nudix hydrolase 7 OS=Arabidopsis thaliana GN=NUDT7 PE=1 SV=1)

HSP 1 Score: 281.182 bits (718), Expect = 5.727e-75
Identity = 138/242 (57.02%), Postives = 178/242 (73.55%), Query Frame = 3
Query:  192 LNGINDNYGGVVVQMNEPMDPQLFASLLKSSISHWRQQAKKGVWIKLPIELANLVEPAVKEGFWFHHAEPNYLMLVYWIPGGANTLPANASHRVGVGAFVMN-GKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQSFF-EKSDIFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPYVQKQELLKYIVDICSAKVDTRGYHGFSPVPT 911
            L G  DNY GV V M EPMD ++F   L++S+SHWR++ KKG+WIKLP+ LANLVE AV EGF +HHAEP YLMLV WI    +T+PANASH VG GA V+N   +EVLVVQE SG F+   +WK PTGV++EGEDI     REV+EET I  +FVEVLAFRQSH++   +K+D+FFLC+L P S+DI +Q+SEI  A+WMP++EY  QP+ +K E+ K++ +IC  K +   Y GF+ VPT
Sbjct:   11 LEGETDNYDGVTVTMVEPMDSEVFTESLRASLSHWREEGKKGIWIKLPLGLANLVEAAVSEGFRYHHAEPEYLMLVSWISETPDTIPANASHVVGAGALVINKNTKEVLVVQERSGFFKDKNVWKLPTGVINEGEDIWTGVAREVEEETGIIADFVEVLAFRQSHKAILKKKTDMFFLCVLSPRSYDITEQKSEILQAKWMPIQEYVDQPWNKKNEMFKFMANICQKKCEEE-YLGFAIVPT 251          
BLAST of FC872492 vs. ExPASy Swiss-Prot
Match: NUDT6_ARATH (Nudix hydrolase 6 OS=Arabidopsis thaliana GN=NUDT6 PE=1 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 4.848e-74
Identity = 139/242 (57.44%), Postives = 176/242 (72.73%), Query Frame = 3
Query:  192 LNGINDNYGGVVVQMNEPMDPQLFASLLKSSISHWRQQAKKGVWIKLPIELANLVEPAVKEGFWFHHAEPNYLMLVYWIPGGANTLPANASHRVGVGAFVMNGK-REVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQSFFE-KSDIFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPYVQKQELLKYIVDICSAKVDTRGYHGFSPVPT 911
            L G+ DNYGGV V + EPM  + F   L++S+ +W  Q  KG+W+KL   L NL+ PA  EGF  HHAE  Y ML  WI    +TLPANASHR+GVGAFV+N K +EVLVVQE  G F+GTG+WK PTGVV EGE+I   A+REV+EET I T+FVEVLAFR+SHQ+F E K+DIFFLC L P +F+I+KQ+SEI AA+WMP+EEY  QP+ QK+EL +++ +IC  ++    Y GFS V T
Sbjct:   11 LQGVPDNYGGVKVNLTEPMTIEDFVPKLRASLVYWSNQGTKGIWLKLADGLDNLIAPAKAEGFVCHHAEREYTMLTSWIADVPSTLPANASHRIGVGAFVLNKKTKEVLVVQEIDGHFKGTGVWKLPTGVVKEGENIWEGALREVEEETGIKTKFVEVLAFRESHQAFLEIKTDIFFLCELEPTTFEIKKQDSEILAAKWMPIEEYVNQPWNQKKELFRFMANICLKRLQEMEYMGFSKVLT 252          
BLAST of FC872492 vs. ExPASy Swiss-Prot
Match: NUDT8_ARATH (Nudix hydrolase 8 OS=Arabidopsis thaliana GN=NUDT8 PE=2 SV=2)

HSP 1 Score: 259.996 bits (663), Expect = 1.366e-68
Identity = 129/239 (53.97%), Postives = 171/239 (71.55%), Query Frame = 3
Query:  192 LNGINDNYGGVVVQMNE-PMDPQLFASLLKSSISHWRQQAKKGVWIKLPIELANLVEPAVKEGFWFHHAEPNYLMLVYWIPGGA-NTLPANASHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQSFFEKSDIFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPYVQKQELLKYIVDICSAKVDTRGYHGFSP 902
            L+  +D YGGV+V   + P +P  FAS+L++S+S WR++ KKGVW+KLP+E + LV  A+KEGF +HHAE  Y+ML YWIP    + LPANASH+VGVG FV+N  +EVLVVQE       TG+WK PTG ++E E+I   AVREVKEET +DTEF EV+AFR +H   FEKSD+FF+CMLRPLS  I     EI+AA+WMPL E+  QP ++  ++ K +++IC A++  R Y G SP
Sbjct:   96 LDAYDDEYGGVIVDHGKLPSNPYAFASMLRASLSDWRRKGKKGVWLKLPVEQSELVPIAIKEGFEYHHAEKGYVMLTYWIPEEEPSMLPANASHQVGVGGFVLNQHKEVLVVQEKYCAPSITGLWKLPTGFINESEEIFSGAVREVKEETGVDTEFSEVIAFRHAHNVAFEKSDLFFICMLRPLSDKIIIDALEIKAAKWMPLAEFVEQPMIRGDKMFKRVIEICEARLSHR-YCGLSP 333          
BLAST of FC872492 vs. ExPASy Swiss-Prot
Match: NUDT5_ARATH (Nudix hydrolase 5 OS=Arabidopsis thaliana GN=NUDT5 PE=2 SV=2)

HSP 1 Score: 256.914 bits (655), Expect = 1.157e-67
Identity = 129/240 (53.75%), Postives = 168/240 (70.00%), Query Frame = 3
Query:  192 LNGINDNYGGVVVQMNEPMDPQL--FASLLKSSISHWRQQAKKGVWIKLPIELANLVEPAVKEGFWFHHAEPNYLMLVYWIPGGANTLPANASHRVGVGAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQSFFE-KSDIFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYAAQPYVQKQ--ELLKYIVDICSAKVDTRGYHGF 896
            L+G  D +GG VV + E     +  F S L  S+  W+ Q KKG+WIKLP EL++LV+ A+K+GF +HHAE  Y+ML +W+P   +TLP NASHR+G+GAFV+N   E+LVVQENSG F+   +WK PTG + EGE I   AVREVKEET ID EFVEVL+F +SHQ+ ++ K+DIFF+C L   +F+IQKQ+SEI AA+WMP+EEY  QPY  K+  E+ K I +IC  K     Y GF
Sbjct:   55 LDGEEDRFGGTVVNLMEVESMTIGDFDSKLDVSLKAWKDQGKKGIWIKLPSELSSLVDTAIKKGFTYHHAENEYVMLTFWLPEPPSTLPCNASHRIGIGAFVLNKNGEMLVVQENSGYFKDKNVWKVPTGTIKEGESIWAGAVREVKEETDIDAEFVEVLSFMESHQAVWQRKTDIFFVCELEARTFEIQKQDSEIHAAKWMPVEEYVNQPYHNKEGNEMFKLIANIC-LKRSREKYTGF 293          
BLAST of FC872492 vs. ExPASy Swiss-Prot
Match: NUDT6_RAT (Nucleoside diphosphate-linked moiety X motif 6 OS=Rattus norvegicus GN=Nudt6 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.601e-35
Identity = 84/213 (39.44%), Postives = 121/213 (56.81%), Query Frame = 3
Query:  192 LNGINDNYGGVVVQMNEP-----MDPQLFASLLKSSISHWRQQAKKGVWIKLPIELANLVEPAVKEGFWFHHAEPNYLMLVYWIPGGANTLPANASHRVGVGAFVMN-GKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQS--FFEKSDIFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYA 806
            L G  D +GG+ V ++       +D   F  LL+++I  WR + +   W+ +PI  ++ + PA   GF FHHAEP+   L  W+  G + LP  A+H+VGV   V +   R+VLVVQ+   R +   +WKFP G+ + GEDI   AVREV EET + +EF  +L+ RQ H+S   F  SD++ +C L+P SF I   + E    EWM LE  A
Sbjct:   43 LQGELDRFGGISVHLSRHRTLHRLDAAAFRRLLQAAIQQWRAEGRIAAWLHIPILQSHFIAPAASLGFCFHHAEPHLSTLTLWLGEGPSRLPGYATHQVGVAGAVFDVSTRKVLVVQD---RNKLKNMWKFPGGLSEPGEDIGDTAVREVFEETGVKSEFRSLLSIRQQHRSPGAFGMSDMYLICRLQPRSFTINFCQQECLKCEWMDLESLA 252          
BLAST of FC872492 vs. ExPASy Swiss-Prot
Match: NUDT6_MOUSE (Nucleoside diphosphate-linked moiety X motif 6 OS=Mus musculus GN=Nudt6 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.686e-34
Identity = 83/213 (38.97%), Postives = 120/213 (56.34%), Query Frame = 3
Query:  192 LNGINDNYGGVVVQMNEP-----MDPQLFASLLKSSISHWRQQAKKGVWIKLPIELANLVEPAVKEGFWFHHAEPNYLMLVYWIPGGANTLPANASHRVGVGAFVMN-GKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQS--FFEKSDIFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYA 806
            L G  D +GGV V ++       +D   F  LL+++I  WR   +   W+ +PI  ++ + PA   GF FHHA+P+   L  W+  G + LP  A+H+VGV   V +   R+VLVVQ+   R +   +WKFP G+ + GEDI   AVREV EET + +EF  +L+ RQ H+S   F  SD++ +C L+P SF I   + E    EW+ LE  A
Sbjct:   43 LQGELDRFGGVSVHLSRHHTLHGLDAAAFRRLLQAAIQQWRSDGRIAAWLHIPILQSHFIAPAASLGFCFHHAKPHSSTLTLWLGEGPSRLPGYATHQVGVAGAVFDVSTRKVLVVQD---RNKLKNMWKFPGGLSEPGEDIADTAVREVFEETGVKSEFRSLLSIRQQHRSPGAFGMSDMYLVCRLQPRSFTINFCQQECLKCEWIDLENLA 252          
BLAST of FC872492 vs. ExPASy Swiss-Prot
Match: NUDT6_HUMAN (Nucleoside diphosphate-linked moiety X motif 6 OS=Homo sapiens GN=NUDT6 PE=1 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 4.905e-34
Identity = 83/213 (38.97%), Postives = 119/213 (55.87%), Query Frame = 3
Query:  192 LNGINDNYGGVVVQMN-----EPMDPQLFASLLKSSISHWRQQAKKGVWIKLPIELANLVEPAVKEGFWFHHAEPNYLMLVYWIPGGANTLPANASHRVGV-GAFVMNGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQSHQS--FFEKSDIFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYA 806
            L G  D +GG+ V++      + +D   F   L++++  WR + +  VW+ +PI  +  + PA   GF FHHAE +   L  W+  G + LP  ASH+VGV GA      R++LVVQ+   R +   +WKFP G+ +  EDI   AVREV EET I +EF  VL+ RQ H +   F KSD++ +C L+P SF I   + E    EWM L + A
Sbjct:   46 LQGELDRFGGISVRLARLDALDRLDAAAFQKGLQAAVQQWRSEGRTAVWLHIPILQSRFIAPAASLGFCFHHAESDSSTLTLWLREGPSRLPGYASHQVGVAGAVFDESTRKILVVQD---RNKLKNMWKFPGGLSEPEEDIGDTAVREVFEETGIKSEFRSVLSIRQQHTNPGAFGKSDMYIICRLKPYSFTINFCQEECLRCEWMDLNDLA 255          
BLAST of FC872492 vs. ExPASy Swiss-Prot
Match: NUDT6_XENLA (Nucleoside diphosphate-linked moiety X motif 6 OS=Xenopus laevis GN=nudt6 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.382e-28
Identity = 73/159 (45.91%), Postives = 94/159 (59.12%), Query Frame = 3
Query:  345 ANLVEPAVKEGFWFHHAEPNYLMLVYWIPGGANTLPANASHRVGVGAFVM---NGKREVLVVQENSGRFRGTGIWKFPTGVVDEGEDICVAAVREVKEETSIDTEFVEVLAFRQ--SHQSFFEKSDIFFLCMLRPLSFDIQKQESEIEAAEWMPLEEYA 806
            + L+  A  EGF FHHAE N   L  W+  G + LP  A+H+VGV   V+   NGK  VLVVQ+   R +    WKFP G+ D+GEDI   AVREV EET I +EF  +L+ RQ  +H   F KSD++ +C L+PLS+ I     E    EWM L+E A
Sbjct:    3 SRLISIAASEGFTFHHAERNESTLTLWLKDGPSKLPGYATHQVGVAGAVLDEDNGK--VLVVQD---RNKTVNAWKFPGGLSDQGEDIGATAVREVLEETGIHSEFKSLLSIRQQHNHPGAFGKSDLYIICRLKPLSYTINFCHQECLKCEWMDLQELA 156          
The following BLAST results are available for this feature:
BLAST of FC872492 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
NUDT2_ARATH1.149e-9166.81Nudix hydrolase 2 OS=Arabidopsis thaliana GN=NUDT2... [more]
NUD10_ARATH1.115e-7860.17Nudix hydrolase 10 OS=Arabidopsis thaliana GN=NUDT... [more]
NUDT7_ARATH5.727e-7557.02Nudix hydrolase 7 OS=Arabidopsis thaliana GN=NUDT7... [more]
NUDT6_ARATH4.848e-7457.44Nudix hydrolase 6 OS=Arabidopsis thaliana GN=NUDT6... [more]
NUDT8_ARATH1.366e-6853.97Nudix hydrolase 8 OS=Arabidopsis thaliana GN=NUDT8... [more]
NUDT5_ARATH1.157e-6753.75Nudix hydrolase 5 OS=Arabidopsis thaliana GN=NUDT5... [more]
NUDT6_RAT2.601e-3539.44Nucleoside diphosphate-linked moiety X motif 6 OS=... [more]
NUDT6_MOUSE1.686e-3438.97Nucleoside diphosphate-linked moiety X motif 6 OS=... [more]
NUDT6_HUMAN4.905e-3438.97Nucleoside diphosphate-linked moiety X motif 6 OS=... [more]
NUDT6_XENLA1.382e-2845.91Nucleoside diphosphate-linked moiety X motif 6 OS=... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAB3AE07ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3AE07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872492 ID=FC872492; Name=FC872492; organism=Citrus clementina; type=EST; length=913bp
GGGGATTTCAAATTTATGTATAAATGATCAAAGCGGTTTCTAGAGTTTTA
TTGCCATATAATCGCAGCTTCTTCTTCTTGTTTTCTGCTAGGAACACCAT
TGCTGCAAGACATGCTCGTGTAACAGGTTGTTTCAATATCAGAGCCATGT
CAGCTTCAGTGAATTCGTCATCAGCAACTGTAAACAAATTTCTAAATGGA
ATCAACGATAACTATGGAGGTGTTGTCGTTCAAATGAATGAGCCCATGGA
TCCTCAGCTTTTTGCTTCACTGCTTAAATCCTCCATCTCACACTGGAGGC
AGCAGGCCAAAAAGGGTGTTTGGATCAAGCTACCCATTGAGCTAGCCAAT
CTTGTTGAACCTGCAGTTAAGGAAGGATTTTGGTTCCACCATGCAGAGCC
AAATTATTTAATGCTTGTATATTGGATTCCTGGAGGGGCTAATACTCTTC
CTGCAAATGCCTCTCACCGGGTGGGAGTTGGTGCATTCGTCATGAATGGA
AAGAGGGAGGTGCTTGTAGTCCAAGAAAATAGTGGGAGATTCCGGGGGAC
AGGCATATGGAAGTTTCCTACTGGAGTTGTTGATGAGGGGGAGGATATCT
GTGTGGCTGCTGTTAGAGAAGTCAAAGAAGAAACATCAATTGACACAGAA
TTTGTTGAAGTACTTGCATTCAGACAAAGCCATCAGTCATTCTTTGAAAA
GTCAGATATATTCTTTTTGTGCATGTTGCGACCCCTTTCCTTTGACATCC
AGAAACAGGAATCTGAGATAGAGGCGGCTGAGTGGATGCCATTGGAAGAA
TATGCAGCGCAGCCATATGTCCAAAAACAGGAACTTCTAAAGTACATAGT
TGACATATGCTCAGCAAAAGTAGACACGAGGGGGTATCATGGATTTTCTC
CCGTGCCTACCAC
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