FC872497

Overview
NameFC872497
Unique NameFC872497
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length558
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12748 contig Ccv1_Contig12748:551..1108. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872497 vs. ExPASy Swiss-Prot
Match: 12KD_FRAAN (Auxin-repressed 12.5 kDa protein OS=Fragaria ananassa PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.398e-12
Identity = 30/41 (73.17%), Postives = 36/41 (87.80%), Query Frame = 1
Query:    4 HPGSNLATRGIGAEVFDKPTHPNSPTVYDWLYSGETRSKHH 126
            HPGSNL+++ +G +VFD P  PNSPTVYDW+YSGETRSKHH
Sbjct:   71 HPGSNLSSKTMGNQVFDSP-QPNSPTVYDWMYSGETRSKHH 110          
The following BLAST results are available for this feature:
BLAST of FC872497 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
12KD_FRAAN6.398e-1273.17Auxin-repressed 12.5 kDa protein OS=Fragaria anana... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAB3AF04ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3AF04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872497 ID=FC872497; Name=FC872497; organism=Citrus clementina; type=EST; length=558bp
GGGCACCCCGGTAGCAACCTTGCTACTAGGGGTATCGGTGCAGAGGTCTT
TGACAAGCCCACACATCCTAACTCTCCCACTGTTTATGACTGGCTTTACA
GTGGGGAGACTAGGAGCAAGCATCATCACTGAGTGGATGATACGCTCCAG
CGATGTAAATGAATGTGATGGGTCACCAACTCACCGGATGAGTTGCCTGC
AGTCTGTAGATAGTGTCGTTTCGTTTTGGATTTCGCAACGTGTCCTTGTC
GTTTTTGTTAATGCTATTTGTATTACGTGTCCTTCCTATCTAAAGTTTGG
TTTTAAATGCTGCTGACTAAAAAGTAAACCAAAGACTGTGTGATGTTTTA
TATCATATAATTGTATGTGACGTGAGGATTGCCTAAGCTTGTGGGCGGAG
ATGAAAGGTTACTGGTTTTTGGGTTTAGGACATGTTTTTGATTGTCATTT
TGTAAGAGCCAAGATCATCCCTTCGTGGACGGTCGTGATGAGCATATATG
TTTTATTATTAATAAATAAGTTGCTTCTCTAAAAAAAAAAAAAAAAAAAA
AAAAAAAA
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