FC872500
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC872500 vs. ExPASy Swiss-Prot
Match: CPSF3_HUMAN (Cleavage and polyadenylation specificity factor subunit 3 OS=Homo sapiens GN=CPSF3 PE=1 SV=1) HSP 1 Score: 401.364 bits (1030), Expect = 3.330e-111 Identity = 187/278 (67.27%), Postives = 227/278 (81.65%), Query Frame = 3 Query: 9 FMTHATKAIYKLLLTDYVLVSKVSVEDMLFDEQDINRSMDRIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIRERRFTDVIHSTISQGGRVLIPAYALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHISPLNSIDDLSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYLVEGTLAKTIISEP 842 FMTHATKAIY+ LL+DYV VS +S +DML+ E D+ SMD+IE ++FH+ EV GIKFWCY AGHVLGAAMFM++IAGV++LYTGD+SR+EDRHL AAE+P PDI IIESTYG +H+ R RE RF + +H +++GGR LIP +ALGRAQELLLILDEYW NHPE H+IPIYYAS LAKKCMAVYQTY+ +MN++IR Q +NPF FKHIS L S+D D+GPSVVMASPG +QSGLSR+LF+ WC+DK+N +I GY VEGTLAK I+SEP Sbjct: 94 FMTHATKAIYRWLLSDYVKVSNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEP 371
BLAST of FC872500 vs. ExPASy Swiss-Prot
Match: CPSF3_BOVIN (Cleavage and polyadenylation specificity factor subunit 3 OS=Bos taurus GN=CPSF3 PE=2 SV=1) HSP 1 Score: 401.364 bits (1030), Expect = 3.330e-111 Identity = 187/278 (67.27%), Postives = 227/278 (81.65%), Query Frame = 3 Query: 9 FMTHATKAIYKLLLTDYVLVSKVSVEDMLFDEQDINRSMDRIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIRERRFTDVIHSTISQGGRVLIPAYALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHISPLNSIDDLSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYLVEGTLAKTIISEP 842 FMTHATKAIY+ LL+DYV VS +S +DML+ E D+ SMD+IE ++FH+ EV GIKFWCY AGHVLGAAMFM++IAGV++LYTGD+SR+EDRHL AAE+P PDI IIESTYG +H+ R RE RF + +H +++GGR LIP +ALGRAQELLLILDEYW NHPE H+IPIYYAS LAKKCMAVYQTY+ +MN++IR Q +NPF FKHIS L S+D D+GPSVVMASPG +QSGLSR+LF+ WC+DK+N +I GY VEGTLAK I+SEP Sbjct: 94 FMTHATKAIYRWLLSDYVKVSNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEP 371
BLAST of FC872500 vs. ExPASy Swiss-Prot
Match: CPSF3_MOUSE (Cleavage and polyadenylation specificity factor subunit 3 OS=Mus musculus GN=Cpsf3 PE=1 SV=1) HSP 1 Score: 399.053 bits (1024), Expect = 1.653e-110 Identity = 186/278 (66.91%), Postives = 226/278 (81.29%), Query Frame = 3 Query: 9 FMTHATKAIYKLLLTDYVLVSKVSVEDMLFDEQDINRSMDRIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIRERRFTDVIHSTISQGGRVLIPAYALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHISPLNSIDDLSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYLVEGTLAKTIISEP 842 FMTHATKAIY+ LL+DYV VS +S +DML+ E D+ SMD+IE ++FH+ EV GIKFWCY AGHVLGAAMFM++IAGV++LYTGD+SR+EDRHL AAE+P PDI IIESTYG +H+ R RE RF +H +++GGR LIP +ALGRAQELLLILDEYW NHPE H+IPIYYAS LAKKCMAVYQTY+ +MN++IR Q +NPF FKHIS L S+D D+GPSVVMASPG +Q+GLSR+LF+ WC+DK+N +I GY VEGTLAK I+SEP Sbjct: 94 FMTHATKAIYRWLLSDYVKVSNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFWHTVHDIVNRGGRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMIQNGLSRELFESWCTDKRNGVIIAGYCVEGTLAKHIMSEP 371
BLAST of FC872500 vs. ExPASy Swiss-Prot
Match: CPSF3_DICDI (Cleavage and polyadenylation specificity factor subunit 3 OS=Dictyostelium discoideum GN=cpsf3 PE=3 SV=1) HSP 1 Score: 371.703 bits (953), Expect = 2.826e-102 Identity = 179/280 (63.93%), Postives = 221/280 (78.93%), Query Frame = 3 Query: 6 VFMTHATKAIYKLLLTDYVLVSKVSVED-MLFDEQDINRSMDRIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIRERRFTDVIHSTISQGGRVLIPAYALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHISPLNSIDDLSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYLVEGTLAKTIISEP 842 VFMTH TKAIY +LL+DYV VS ++ +D MLFD+ D++RS+++IE + + Q VE NGIK C+ AGHVLGAAMFM++IAGV++LYTGD+SR+EDRHL AE P D+ IIESTYGVQ+H+PR RE+RFT +H + + G+ LIP +ALGRAQELLLILDEYW +P+ H++PIYYAS LAKKCM VY+TYI MN+R+R QF SNPF+FKHI + I+ D GP V MASPG LQSGLSRQLF+ WCSDK+N VIPGY VEGTLAK I+SEP Sbjct: 119 VFMTHPTKAIYGMLLSDYVKVSNITRDDDMLFDKSDLDRSLEKIEKVRYRQKVEHNGIKVTCFNAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMGAETPPVKVDVLIIESTYGVQVHEPRLEREKRFTSSVHQVVERNGKCLIPVFALGRAQELLLILDEYWIANPQLHHVPIYYASALAKKCMGVYRTYINMMNDRVRAQFDVSNPFEFKHIKNIKGIESFDDRGPCVFMASPGMLQSGLSRQLFERWCSDKRNGIVIPGYSVEGTLAKHIMSEP 398
BLAST of FC872500 vs. ExPASy Swiss-Prot
Match: YSH1_SCHPO (Endoribonuclease ysh1 OS=Schizosaccharomyces pombe GN=ysh1 PE=2 SV=1) HSP 1 Score: 347.821 bits (891), Expect = 4.369e-95 Identity = 163/279 (58.42%), Postives = 210/279 (75.27%), Query Frame = 3 Query: 6 VFMTHATKAIYKLLLTDYVLVSKVSVEDMLFDEQDINRSMDRIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIRERRFTDVIHSTISQGGRVLIPAYALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPFKFKHISPLNSIDDLSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYLVEGTLAKTIISEP 842 VFMTH TKA+ K LL+DYV VS V +ED L+DE+D+ + DRIE +D+H T+EV GIKF Y AGHVLGA M+ V++AGV +L+TGDYSREEDRHL AE+P PD+ I ESTYG HQPR +E R ++IHSTI GGRVL+P +ALGRAQELLLILDEYW+NH + ++PIYYAS LA+KCMA++QTY+ MN+ IR FA NPF F+ + L +++ D+GPSV++ASPG LQ+G+SR L + W D +N ++ GY VEGT+AK I +EP Sbjct: 118 VFMTHPTKAVCKWLLSDYVKVSNVGMEDQLYDEKDLLAAFDRIEAVDYHSTIEVEGIKFTPYHAGHVLGACMYFVEMAGVNILFTGDYSREEDRHLHVAEVPPKRPDVLITESTYGTASHQPRLEKEARLLNIIHSTIRNGGRVLMPVFALGRAQELLLILDEYWNNHLDLRSVPIYYASSLARKCMAIFQTYVNMMNDNIRKIFAERNPFIFRFVKSLRNLEKFDDIGPSVILASPGMLQNGVSRTLLERWAPDPRNTLLLTGYSVEGTMAKQITNEP 396
BLAST of FC872500 vs. ExPASy Swiss-Prot
Match: YSH1_USTMA (Endoribonuclease YSH1 OS=Ustilago maydis GN=YSH1 PE=3 SV=1) HSP 1 Score: 343.584 bits (880), Expect = 8.240e-94 Identity = 161/281 (57.30%), Postives = 212/281 (75.44%), Query Frame = 3 Query: 6 VFMTHATKAIYKLLLTDYVLVSKVSVEDMLFDEQDINRSMDRIEVLDFHQTVEV-NGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIRERRFTDVIHSTISQGGRVLIPAYALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQF-ANSNPFKFKHISPLNSIDDLSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYLVEGTLAKTIISEP 842 V+MTH TKA+Y+ L++D+V +S +D LFDE ++ S +IE +DFHQ V + G++F Y AGHVLGA MF+++IAG+R+LYTGD+SREEDRHL AE+P PD+ I ESTYG Q H+PR +E RFT IH I +GGRVL+P + LGRAQELLL+LDEYW+ HPE H++PIYYAS LAKKC++VYQTYI +MN+ IR +F NPF FKHIS L S++ D GP V+MASPG +QSG+SR+L + W DK+N ++ GY VEGT+A+ I++EP Sbjct: 108 VYMTHPTKAVYRFLMSDFVRISNAGNDDNLFDENEMLASWRQIEAVDFHQDVSIAGGLRFTSYHAGHVLGACMFLIEIAGLRILYTGDFSREEDRHLVQAEIPPVKPDVLICESTYGTQTHEPRLDKEHRFTSQIHHIIKRGGRVLLPVFVLGRAQELLLLLDEYWAAHPELHSVPIYYASALAKKCISVYQTYIHTMNDHIRTRFNRRDNPFVFKHISNLRSLEKFEDRGPCVMMASPGFMQSGVSRELLERWAPDKRNGLIVSGYSVEGTMARNILNEP 388
BLAST of FC872500 vs. ExPASy Swiss-Prot
Match: YSH1_KLULA (Endoribonuclease YSH1 OS=Kluyveromyces lactis GN=YSH1 PE=3 SV=1) HSP 1 Score: 337.421 bits (864), Expect = 5.905e-92 Identity = 164/291 (56.36%), Postives = 218/291 (74.91%), Query Frame = 3 Query: 6 VFMTHATKAIYKLLLTDYVLVSKV-------SVEDMLFDEQDINRSMDRIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIRERRFTDVIHSTISQGGRVLIPAYALGRAQELLLILDEYWSNHPE---FHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANS--NPFKFKHISPLNSIDDLSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYLVEGTLAKTIISEP 842 VFMTH TKAIY+ LL D+V V+ + S D L+ ++D+ S DRIE +D+H T+EVNGIKF + AGHVLGAAMF ++IAGVRVL+TGDYSRE DRHL +AE+P S D+ I+EST+G H+PR RER+ T +IH+ +S+GGRVL+P +ALGRAQE++LILDEYW NH E +PI+YAS LAKKCM+V+QTY+ MN+ IR +F +S NPF FK+IS L ++D+ D GPSV++ASPG LQ+GLSR + + WC ++KN ++ GY VEGT+AK ++ EP Sbjct: 95 VFMTHPTKAIYRWLLNDFVKVTSIGDSPGQDSSNDNLYSDEDLAESFDRIETIDYHSTMEVNGIKFTAFHAGHVLGAAMFQIEIAGVRVLFTGDYSREVDRHLNSAEVPPQSSDVIIVESTFGTATHEPRQNRERKLTQLIHTVVSKGGRVLLPVFALGRAQEIMLILDEYWQNHKEELGNGQVPIFYASNLAKKCMSVFQTYVNMMNDDIRKKFKDSQTNPFIFKNISYLKNLDEFEDFGPSVMLASPGMLQNGLSRDILEKWCPEEKNLVLVTGYSVEGTMAKYLLLEP 385
BLAST of FC872500 vs. ExPASy Swiss-Prot
Match: YSH1_ASHGO (Endoribonuclease YSH1 OS=Ashbya gossypii GN=YSH1 PE=3 SV=1) HSP 1 Score: 336.265 bits (861), Expect = 1.316e-91 Identity = 162/291 (55.67%), Postives = 220/291 (75.60%), Query Frame = 3 Query: 6 VFMTHATKAIYKLLLTDYVLVSKVS-------VEDMLFDEQDINRSMDRIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIRERRFTDVIHSTISQGGRVLIPAYALGRAQELLLILDEYWSNHPE---FHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANS--NPFKFKHISPLNSIDDLSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYLVEGTLAKTIISEP 842 VFMTH TKAIY+ LL+D+V V+ + ++ L+ ++D+ S DRIE +D+H T++VNGIKF Y AGHVLGAAMF V+IAG+R+L+TGDYSRE DRHL +AE+P DI I+EST+G H+PR +E++ T +IH+T+S+GGRVL+P +ALGRAQE++LILDEYWS H E +PI+YAS LA+KCM+V+QTY+ MN++IR +F +S NPF FK+IS L ++D+ D GPSV++ASPG LQ+GLSR L + WC D+KN +I GY VEGT+AK ++ EP Sbjct: 92 VFMTHPTKAIYRWLLSDFVKVTNIGNDNAGGVSDENLYTDEDLAESFDRIETVDYHSTIDVNGIKFTAYHAGHVLGAAMFQVEIAGLRILFTGDYSRELDRHLNSAEIPTLPSDILIVESTFGTATHEPRTSKEKKLTQLIHTTVSKGGRVLLPVFALGRAQEIMLILDEYWSQHAEQLGNGQVPIFYASNLARKCMSVFQTYVNMMNDKIRKKFRDSQTNPFIFKNISYLKNLDEFQDFGPSVMLASPGMLQNGLSRDLLEKWCPDEKNLVLITGYSVEGTMAKFLMLEP 382
BLAST of FC872500 vs. ExPASy Swiss-Prot
Match: YSH1_YARLI (Endoribonuclease YSH1 OS=Yarrowia lipolytica GN=YSH1 PE=3 SV=2) HSP 1 Score: 333.183 bits (853), Expect = 1.114e-90 Identity = 160/282 (56.74%), Postives = 208/282 (73.76%), Query Frame = 3 Query: 6 VFMTHATKAIYKLLLTDYVLVSKVSVEDM-LFDEQDINRSMDRIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIRERRFTDVIHSTISQGGRVLIPAYALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFAN--SNPFKFKHISPLNSIDDLSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYLVEGTLAKTIISEP 842 VFMTH TK IY+ LL+D+V V+ + D L+ E D+ S ++IE +D+H T+EVNG+KF Y AGHVLGAAM+ +++ GV+VL+TGDYSREEDRHL AE+P PDI I ESTYG H PR RE+R T +IHST+ +GG+ L+P +ALGRAQE+LLILDEYW HP+ IYYAS LAKKC+AVYQTYI MN+ IR +F + +NPF+FK+I + ++D D+GP V++ASPG LQSG+SR L + W D KN ++ GY VEGT+AK II+EP Sbjct: 118 VFMTHPTKGIYRWLLSDFVRVTSGAESDPDLYSEADLTASFNKIETIDYHSTMEVNGVKFTAYHAGHVLGAAMYTIEVGGVKVLFTGDYSREEDRHLNQAEVPPMKPDILICESTYGTGTHLPRLEREQRLTGLIHSTLDKGGKCLLPVFALGRAQEILLILDEYWEAHPDLQEFSIYYASALAKKCIAVYQTYINMMNDNIRRRFRDQKTNPFRFKYIKNIKNLDRFDDMGPCVMVASPGMLQSGVSRSLLERWAPDPKNTLILTGYSVEGTMAKQIINEP 399
BLAST of FC872500 vs. ExPASy Swiss-Prot
Match: YSH1_YEAST (Endoribonuclease YSH1 OS=Saccharomyces cerevisiae GN=YSH1 PE=1 SV=1) HSP 1 Score: 330.487 bits (846), Expect = 7.219e-90 Identity = 163/292 (55.82%), Postives = 218/292 (74.66%), Query Frame = 3 Query: 6 VFMTHATKAIYKLLLTDYVLVSKV--------SVEDMLFDEQDINRSMDRIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIRERRFTDVIHSTISQGGRVLIPAYALGRAQELLLILDEYWSNHPE---FHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANS--NPFKFKHISPLNSIDDLSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYLVEGTLAKTIISEP 842 VFMTH TKAIY+ LL D+V V+ + + ++ LF ++D+ S D+IE +D+H TV+VNGIKF + AGHVLGAAMF ++IAG+RVL+TGDYSRE DRHL +AE+P S ++ I+EST+G H+PR RER+ T +IHST+ +GGRVL+P +ALGRAQE++LILDEYWS H + +PI+YAS LAKKCM+V+QTY+ MN+ IR +F +S NPF FK+IS L +++D D GPSV++ASPG LQSGLSR L + WC + KN +I GY +EGT+AK I+ EP Sbjct: 90 VFMTHPTKAIYRWLLRDFVRVTSIGSSSSSMGTKDEGLFSDEDLVDSFDKIETVDYHSTVDVNGIKFTAFHAGHVLGAAMFQIEIAGLRVLFTGDYSREVDRHLNSAEVPPLSSNVLIVESTFGTATHEPRLNRERKLTQLIHSTVMRGGRVLLPVFALGRAQEIMLILDEYWSQHADELGGGQVPIFYASNLAKKCMSVFQTYVNMMNDDIRKKFRDSQTNPFIFKNISYLRNLEDFQDFGPSVMLASPGMLQSGLSRDLLERWCPEDKNLVLITGYSIEGTMAKFIMLEP 381 The following BLAST results are available for this feature:
BLAST of FC872500 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 43
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Sequences
The
following sequences are available for this feature:
EST sequence >FC872500 ID=FC872500; Name=FC872500; organism=Citrus clementina; type=EST; length=843bpback to top |