FC872505

Overview
NameFC872505
Unique NameFC872505
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length820
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig418 contig Ccv1_Contig418:1..804. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872505 vs. ExPASy Swiss-Prot
Match: DNJ11_ARATH (Chaperone protein dnaJ 11, chloroplastic OS=Arabidopsis thaliana GN=ATJ11 PE=1 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 2.798e-22
Identity = 62/147 (42.18%), Postives = 83/147 (56.46%), Query Frame = 1
Query:  148 SVKFRPLRVSASACASTAERTRTHHHIT---SPGPGSLYEILGIQTGATCQEIKTAYRKLARVLRPDVAAKSQ-NENSAYKFMKLHEAYETLSDPKKRADYDRTLFRRRRPSGSPFAVSGVANTMATSSNSRFCAYSRRTWETDQCW 576
            + +  P  VSAS   +  E +   H I    +  P SLY++L +  GAT Q+IK+AYR+LAR+  PDVA   + + +SA +FMK+H AY TLSDP+KR+ YDR + RR RP               T   S   +Y  R WETDQCW
Sbjct:   29 TARISPPLVSASCSYTYTEDSPRLHQIPRRLTTVPASLYDVLEVPLGATSQDIKSAYRRLARICHPDVAGTDRTSSSSADEFMKIHAAYCTLSDPEKRSVYDRRMLRRSRP--------------LTVGTSGLGSYVGRNWETDQCW 161          
BLAST of FC872505 vs. ExPASy Swiss-Prot
Match: DNJ20_ARATH (Chaperone protein dnaJ 20, chloroplastic OS=Arabidopsis thaliana GN=ATJ20 PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 5.289e-13
Identity = 50/144 (34.72%), Postives = 75/144 (52.08%), Query Frame = 1
Query:   70 STLASSAHLIGPGFITNETHSQSQPTSVKFRPLRVSASACASTAERTRTHHH--ITSPGPGSLYEILGIQTGATCQEIKTAYRKLARVLRPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTLFRRRRPSGSPFAVSG 495
            S L+++ H   P F   +  S  QPTS+       + +  +ST  ++R  H   +      S Y++LG+    T  EIK AY++LAR   PDV+   + E    +F+++ EAYETLSDP++R  YDR L       G  F+ SG
Sbjct:    8 SILSTNHH---PFFYKQQPISSLQPTSIPTTISYPTRTRFSSTRIQSRLTHDDPVKQSEDLSFYDLLGVTESVTLPEIKQAYKQLARKYHPDVSPPDRVEEYTDRFIRVQEAYETLSDPRRRVLYDRDL-----SMGFSFSFSG 143          
BLAST of FC872505 vs. ExPASy Swiss-Prot
Match: DNAJ_CARHZ (Chaperone protein dnaJ OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.477e-12
Identity = 37/64 (57.81%), Postives = 46/64 (71.88%), Query Frame = 1
Query:  253 YEILGIQTGATCQEIKTAYRKLARVLRPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDR 444
            YEILG+   AT +EIK AYRKLAR   PDV     + N+A KF +++EAYE LSDP+KRA YD+
Sbjct:    6 YEILGVARNATPEEIKKAYRKLARKYHPDV--NKDDPNAAEKFKEINEAYEVLSDPEKRARYDQ 67          
BLAST of FC872505 vs. ExPASy Swiss-Prot
Match: DNAJ_BACCR (Chaperone protein dnaJ OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.950e-11
Identity = 34/64 (53.12%), Postives = 45/64 (70.31%), Query Frame = 1
Query:  253 YEILGIQTGATCQEIKTAYRKLARVLRPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDR 444
            YE+LG+  GA+  EIK AYR+LA+   PDV   S+ EN+  KF ++ EAYE LSD +KRA YD+
Sbjct:    7 YEVLGLSKGASTDEIKKAYRRLAKKYHPDV---SKEENAIEKFKEVQEAYEVLSDDQKRAQYDQ 67          
BLAST of FC872505 vs. ExPASy Swiss-Prot
Match: DNAJ_BACC4 (Chaperone protein dnaJ OS=Bacillus cereus (strain B4264) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.950e-11
Identity = 34/64 (53.12%), Postives = 45/64 (70.31%), Query Frame = 1
Query:  253 YEILGIQTGATCQEIKTAYRKLARVLRPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDR 444
            YE+LG+  GA+  EIK AYR+LA+   PDV   S+ EN+  KF ++ EAYE LSD +KRA YD+
Sbjct:    7 YEVLGLSKGASTDEIKKAYRRLAKKYHPDV---SKEENAIEKFKEVQEAYEVLSDDQKRAQYDQ 67          
BLAST of FC872505 vs. ExPASy Swiss-Prot
Match: DNAJ_BACC2 (Chaperone protein dnaJ OS=Bacillus cereus (strain G9842) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.950e-11
Identity = 34/64 (53.12%), Postives = 45/64 (70.31%), Query Frame = 1
Query:  253 YEILGIQTGATCQEIKTAYRKLARVLRPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDR 444
            YE+LG+  GA+  EIK AYR+LA+   PDV   S+ EN+  KF ++ EAYE LSD +KRA YD+
Sbjct:    7 YEVLGLSKGASTDEIKKAYRRLAKKYHPDV---SKEENAIEKFKEVQEAYEVLSDDQKRAQYDQ 67          
BLAST of FC872505 vs. ExPASy Swiss-Prot
Match: DNAJ_EXISA (Chaperone protein dnaJ OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.465e-11
Identity = 34/64 (53.12%), Postives = 45/64 (70.31%), Query Frame = 1
Query:  253 YEILGIQTGATCQEIKTAYRKLARVLRPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDR 444
            YE+LG+   A+ Q+IK AYRKLAR   PD+   +Q  ++A KF ++ EAYE LSD +KRA YDR
Sbjct:    7 YEVLGLDKSASAQDIKRAYRKLARQYHPDI---NQEADAADKFKEIGEAYEVLSDEQKRAQYDR 67          
BLAST of FC872505 vs. ExPASy Swiss-Prot
Match: DNAJ_HYDTH (Chaperone protein dnaJ OS=Hydrogenobacter thermophilus GN=dnaJ PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.444e-11
Identity = 32/66 (48.48%), Postives = 48/66 (72.73%), Query Frame = 1
Query:  253 YEILGIQTGATCQEIKTAYRKLARVLRPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDRTL 450
            Y+ILG+   AT +EIK AYR+LA+   PD++A   +EN++ KF +++EAY  LSD ++R +YDR L
Sbjct:    7 YQILGVSKDATAEEIKKAYRRLAKEYHPDISA---DENASEKFKEINEAYHILSDEERRKEYDRIL 69          
BLAST of FC872505 vs. ExPASy Swiss-Prot
Match: DNAJ_BACWK (Chaperone protein dnaJ OS=Bacillus weihenstephanensis (strain KBAB4) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.444e-11
Identity = 34/64 (53.12%), Postives = 45/64 (70.31%), Query Frame = 1
Query:  253 YEILGIQTGATCQEIKTAYRKLARVLRPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDR 444
            YE+LG+  GA+  EIK AYR+LA+   PDV   S+ EN+  KF ++ EAYE LSD +KRA YD+
Sbjct:    7 YEVLGLSQGASKDEIKKAYRRLAKKYHPDV---SKEENAIEKFKEVQEAYEVLSDDQKRAQYDQ 67          
BLAST of FC872505 vs. ExPASy Swiss-Prot
Match: DNAJ_BACSK (Chaperone protein dnaJ OS=Bacillus clausii (strain KSM-K16) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.444e-11
Identity = 32/64 (50.00%), Postives = 47/64 (73.44%), Query Frame = 1
Query:  253 YEILGIQTGATCQEIKTAYRKLARVLRPDVAAKSQNENSAYKFMKLHEAYETLSDPKKRADYDR 444
            YE+LG+   A+ +E+K AYRKLAR   PDV   ++ E++  KF ++ EAY+TLSDP+K+A YD+
Sbjct:    7 YEVLGVDRNASVEEVKKAYRKLARKYHPDV---NKEEDAEAKFKEVKEAYDTLSDPQKKARYDQ 67          
The following BLAST results are available for this feature:
BLAST of FC872505 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
DNJ11_ARATH2.798e-2242.18Chaperone protein dnaJ 11, chloroplastic OS=Arabid... [more]
DNJ20_ARATH5.289e-1334.72Chaperone protein dnaJ 20, chloroplastic OS=Arabid... [more]
DNAJ_CARHZ4.477e-1257.81Chaperone protein dnaJ OS=Carboxydothermus hydroge... [more]
DNAJ_BACCR4.950e-1153.13Chaperone protein dnaJ OS=Bacillus cereus (strain ... [more]
DNAJ_BACC44.950e-1153.13Chaperone protein dnaJ OS=Bacillus cereus (strain ... [more]
DNAJ_BACC24.950e-1153.13Chaperone protein dnaJ OS=Bacillus cereus (strain ... [more]
DNAJ_EXISA6.465e-1153.13Chaperone protein dnaJ OS=Exiguobacterium sp. (str... [more]
DNAJ_HYDTH8.444e-1148.48Chaperone protein dnaJ OS=Hydrogenobacter thermoph... [more]
DNAJ_BACWK8.444e-1153.13Chaperone protein dnaJ OS=Bacillus weihenstephanen... [more]
DNAJ_BACSK8.444e-1150.00Chaperone protein dnaJ OS=Bacillus clausii (strain... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3AG02ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3AG02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872505 ID=FC872505; Name=FC872505; organism=Citrus clementina; type=EST; length=820bp
GGGGGATACTACTCTCATCTTCAAAACAAAACACAAGAAGTAATCTAATC
ATCGATTCAATCCATCATGTCTACTCTTGCATCTTCAGCCCATCTGATTG
GCCCGGGATTTATCACCAACGAGACTCATTCACAATCACAGCCCACGTCT
GTCAAATTCCGCCCACTTCGCGTATCGGCATCGGCTTGCGCCTCAACGGC
GGAGAGAACAAGAACCCATCATCACATTACTTCTCCTGGACCCGGCTCAC
TCTACGAAATCCTGGGGATTCAAACGGGTGCCACGTGTCAGGAAATCAAG
ACTGCTTATCGGAAATTAGCAAGAGTTTTGCGCCCGGATGTTGCCGCTAA
GAGTCAAAATGAGAATTCAGCATATAAGTTCATGAAATTACACGAAGCTT
ACGAAACTCTATCTGATCCCAAGAAGCGTGCGGACTACGATCGTACCCTT
TTCAGGCGAAGAAGGCCATCGGGTTCCCCATTTGCGGTCTCGGGAGTGGC
AAATACGATGGCCACTTCGTCGAATTCAAGATTTTGTGCCTACTCAAGGC
GGACATGGGAGACTGATCAGTGCTGGTAGAAAATAAAATACATAGCTGCA
ACTGCAAGATTATGTTATATGATCTTAGCTGTTCAGGAATTAGGATTAGA
GATGCTGCCCTTTAACGTCTGGGGATTAATGCTAACGCGTGTAGCTATTT
ATGATTGTAATTGAAATTTGTTAATCCAGGCGGCATTTTTACAGCCTGCA
ATTGCAATGGGTTCAATGTAAAAGTTCAGTTATTAGCCTAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAA
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