FC872776

Overview
NameFC872776
Unique NameFC872776
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length413
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig150 contig Ccv1_Contig150:87..499. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872776 vs. ExPASy Swiss-Prot
Match: RL3_ORYSJ (60S ribosomal protein L3 OS=Oryza sativa subsp. japonica GN=RPL3 PE=2 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 1.838e-25
Identity = 54/62 (87.10%), Postives = 59/62 (95.16%), Query Frame = 3
Query:    3 VKGCCVGPKKRVVTLRQSLLKQMSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLKA 188
            +KGCCVGPKKRVVTLRQSLLKQ SRLALEEIKLKFIDTSSKFGHGRFQTT EK +++G+LKA
Sbjct:  328 IKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTDEKQRFFGKLKA 389          
BLAST of FC872776 vs. ExPASy Swiss-Prot
Match: RL32_ARATH (60S ribosomal protein L3-2 OS=Arabidopsis thaliana GN=ARP2 PE=2 SV=4)

HSP 1 Score: 105.145 bits (261), Expect = 1.115e-22
Identity = 49/59 (83.05%), Postives = 55/59 (93.22%), Query Frame = 3
Query:    3 VKGCCVGPKKRVVTLRQSLLKQMSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGR 179
            +KGCCVGPKKRVVTLRQ+LLKQ SRLA+EEIKLKFID +S  GHGRFQT+QEKAK+YGR
Sbjct:  328 IKGCCVGPKKRVVTLRQTLLKQTSRLAMEEIKLKFIDAASNGGHGRFQTSQEKAKFYGR 386          
BLAST of FC872776 vs. ExPASy Swiss-Prot
Match: RL31_ARATH (60S ribosomal protein L3-1 OS=Arabidopsis thaliana GN=ARP1 PE=2 SV=5)

HSP 1 Score: 101.293 bits (251), Expect = 1.610e-21
Identity = 48/60 (80.00%), Postives = 54/60 (90.00%), Query Frame = 3
Query:    3 VKGCCVGPKKRVVTLRQSLLKQMSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRL 182
            +KGCCVGPKKRVVTLRQSLL Q SRLALEEIKLKFIDT+S FGHGRFQT+ EK ++Y R+
Sbjct:  328 IKGCCVGPKKRVVTLRQSLLTQTSRLALEEIKLKFIDTASIFGHGRFQTSLEKMRFYNRV 387          
BLAST of FC872776 vs. ExPASy Swiss-Prot
Match: RL3_DROME (60S ribosomal protein L3 OS=Drosophila melanogaster GN=RpL3 PE=1 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 4.849e-18
Identity = 41/61 (67.21%), Postives = 49/61 (80.33%), Query Frame = 3
Query:    3 VKGCCVGPKKRVVTLRQSLLKQMSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 185
            +KGCC+G KKR++TLR+SLLK   R ALE+IKLKFIDTSSK GHGRFQT  +K  + G LK
Sbjct:  333 IKGCCIGSKKRIITLRKSLLKHTKRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLK 393          
BLAST of FC872776 vs. ExPASy Swiss-Prot
Match: RL3_BOVIN (60S ribosomal protein L3 OS=Bos taurus GN=RPL3 PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 9.144e-17
Identity = 42/61 (68.85%), Postives = 49/61 (80.33%), Query Frame = 3
Query:    3 VKGCCVGPKKRVVTLRQSLLKQMSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 185
            +KGC VG KKRV+TLR+SLL Q  R ALE+I LKFIDT+SKFGHGRFQT +EK  + G LK
Sbjct:  333 LKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTVEEKKAFMGPLK 393          
BLAST of FC872776 vs. ExPASy Swiss-Prot
Match: RL3_RAT (60S ribosomal protein L3 OS=Rattus norvegicus GN=Rpl3 PE=1 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 1.194e-16
Identity = 42/61 (68.85%), Postives = 49/61 (80.33%), Query Frame = 3
Query:    3 VKGCCVGPKKRVVTLRQSLLKQMSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 185
            +KGC VG KKRV+TLR+SLL Q  R ALE+I LKFIDT+SKFGHGRFQT +EK  + G LK
Sbjct:  333 LKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLK 393          
BLAST of FC872776 vs. ExPASy Swiss-Prot
Match: RL3_MOUSE (60S ribosomal protein L3 OS=Mus musculus GN=Rpl3 PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 1.194e-16
Identity = 42/61 (68.85%), Postives = 49/61 (80.33%), Query Frame = 3
Query:    3 VKGCCVGPKKRVVTLRQSLLKQMSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 185
            +KGC VG KKRV+TLR+SLL Q  R ALE+I LKFIDT+SKFGHGRFQT +EK  + G LK
Sbjct:  333 LKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLK 393          
BLAST of FC872776 vs. ExPASy Swiss-Prot
Match: RL3_MACFA (60S ribosomal protein L3 OS=Macaca fascicularis GN=RPL3 PE=2 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 1.194e-16
Identity = 42/61 (68.85%), Postives = 49/61 (80.33%), Query Frame = 3
Query:    3 VKGCCVGPKKRVVTLRQSLLKQMSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 185
            +KGC VG KKRV+TLR+SLL Q  R ALE+I LKFIDT+SKFGHGRFQT +EK  + G LK
Sbjct:  333 LKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLK 393          
BLAST of FC872776 vs. ExPASy Swiss-Prot
Match: RL3_HUMAN (60S ribosomal protein L3 OS=Homo sapiens GN=RPL3 PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 1.194e-16
Identity = 42/61 (68.85%), Postives = 49/61 (80.33%), Query Frame = 3
Query:    3 VKGCCVGPKKRVVTLRQSLLKQMSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 185
            +KGC VG KKRV+TLR+SLL Q  R ALE+I LKFIDT+SKFGHGRFQT +EK  + G LK
Sbjct:  333 LKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLK 393          
BLAST of FC872776 vs. ExPASy Swiss-Prot
Match: RL3_TOXCA (60S ribosomal protein L3 OS=Toxocara canis GN=RPL3 PE=2 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 2.661e-16
Identity = 39/61 (63.93%), Postives = 48/61 (78.69%), Query Frame = 3
Query:    3 VKGCCVGPKKRVVTLRQSLLKQMSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 185
            ++GCCVG KKR +TLR+SL+ Q  R A E+I LK+IDTSSKFGHGRFQT  EK  + G+LK
Sbjct:  330 IRGCCVGSKKRPITLRKSLIVQTKRFAHEKINLKWIDTSSKFGHGRFQTHAEKRAFMGKLK 390          
The following BLAST results are available for this feature:
BLAST of FC872776 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RL3_ORYSJ1.838e-2587.1060S ribosomal protein L3 OS=Oryza sativa subsp. ja... [more]
RL32_ARATH1.115e-2283.0560S ribosomal protein L3-2 OS=Arabidopsis thaliana... [more]
RL31_ARATH1.610e-2180.0060S ribosomal protein L3-1 OS=Arabidopsis thaliana... [more]
RL3_DROME4.849e-1867.2160S ribosomal protein L3 OS=Drosophila melanogaste... [more]
RL3_BOVIN9.144e-1768.8560S ribosomal protein L3 OS=Bos taurus GN=RPL3 PE=... [more]
RL3_RAT1.194e-1668.8560S ribosomal protein L3 OS=Rattus norvegicus GN=R... [more]
RL3_MOUSE1.194e-1668.8560S ribosomal protein L3 OS=Mus musculus GN=Rpl3 P... [more]
RL3_MACFA1.194e-1668.8560S ribosomal protein L3 OS=Macaca fascicularis GN... [more]
RL3_HUMAN1.194e-1668.8560S ribosomal protein L3 OS=Homo sapiens GN=RPL3 P... [more]
RL3_TOXCA2.661e-1663.9360S ribosomal protein L3 OS=Toxocara canis GN=RPL3... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3CD05ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3CD05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872776 ID=FC872776; Name=FC872776; organism=Citrus clementina; type=EST; length=413bp
GGGTCAAGGGCTGCTGTGTTGGACCTAAGAAGCGTGTTGTGACGTTGAGG
CAGTCCCTACTGAAGCAGATGTCTAGGCTTGCATTGGAGGAGATTAAGCT
CAAGTTCATTGACACATCCTCCAAGTTCGGCCATGGTCGGTTCCAGACAA
CGCAGGAGAAGGCCAAGTACTATGGAAGGCTCAAGGCTTGATTTTGGCCA
AGTTGAAGAAGAGATTGCCTTTGGTTTCAGGGTAGTTTTGAACATCTAAG
ATTTTTGGTCATTCTAGTCTCTATTTTGAATTAATTAATATGGCTTTGGC
TACACTGGCAGTGCTTTGAAACTCCATTTGTGCATGGTTTCTTTTTTGCG
CGTTAATACATCTTACGGTATTTTTGGGCTTTAAGAAAAAAAAAAAAAAA
AAAAAAAAAAAAA
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