FC872786

Overview
NameFC872786
Unique NameFC872786
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length516
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9786 contig Ccv1_Contig9786:1..516. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872786 vs. ExPASy Swiss-Prot
Match: RS28_MAIZE (40S ribosomal protein S28 OS=Zea mays GN=RPS28 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.288e-18
Identity = 46/51 (90.20%), Postives = 48/51 (94.12%), Query Frame = 3
Query:   78 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDI 230
            MD+Q+K AVVVKVMGRTGSRGQVTQVRVKFLDDQNR IMRNVKGPV EGDI
Sbjct:    1 MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVCEGDI 51          
BLAST of FC872786 vs. ExPASy Swiss-Prot
Match: RS282_ARATH (40S ribosomal protein S28-2 OS=Arabidopsis thaliana GN=RPS28C PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 4.894e-18
Identity = 46/51 (90.20%), Postives = 48/51 (94.12%), Query Frame = 3
Query:   78 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDI 230
            MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RFIMRNVKGPVREGD+
Sbjct:    1 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRFIMRNVKGPVREGDV 50          
BLAST of FC872786 vs. ExPASy Swiss-Prot
Match: RS281_ARATH (40S ribosomal protein S28-1 OS=Arabidopsis thaliana GN=RPS28A PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 8.348e-18
Identity = 46/51 (90.20%), Postives = 48/51 (94.12%), Query Frame = 3
Query:   78 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDI 230
            MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +R+IMRNVKGPVREGDI
Sbjct:    1 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRYIMRNVKGPVREGDI 50          
BLAST of FC872786 vs. ExPASy Swiss-Prot
Match: RS28_ICTPU (40S ribosomal protein S28 OS=Ictalurus punctatus GN=rps28 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.191e-13
Identity = 35/47 (74.47%), Postives = 41/47 (87.23%), Query Frame = 3
Query:   90 IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDI 230
            IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+
Sbjct:    9 IKLARVTKVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGPVREGDV 55          
BLAST of FC872786 vs. ExPASy Swiss-Prot
Match: RS28_DANRE (40S ribosomal protein S28 OS=Danio rerio GN=rps28 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.191e-13
Identity = 35/47 (74.47%), Postives = 41/47 (87.23%), Query Frame = 3
Query:   90 IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDI 230
            IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+
Sbjct:    9 IKLARVTKVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGPVREGDV 55          
BLAST of FC872786 vs. ExPASy Swiss-Prot
Match: RS28_DROME (40S ribosomal protein S28 OS=Drosophila melanogaster GN=RpS28b PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.379e-12
Identity = 35/51 (68.63%), Postives = 43/51 (84.31%), Query Frame = 3
Query:   78 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDI 230
            MD  +  A V+KV+GRTGS+GQ TQV+V+FL +QNR I+RNVKGPVREGDI
Sbjct:    1 MDKPVVWARVMKVLGRTGSQGQCTQVKVEFLGEQNRQIIRNVKGPVREGDI 51          
BLAST of FC872786 vs. ExPASy Swiss-Prot
Match: RS28_SCHPO (40S ribosomal protein S28 OS=Schizosaccharomyces pombe GN=rps28a PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.073e-12
Identity = 37/54 (68.52%), Postives = 44/54 (81.48%), Query Frame = 3
Query:   78 MDSQ---IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDI 230
            MDS    +K A V+KV+GRTGSRG VTQVRV+F+DD +R I+RNVKGPVRE DI
Sbjct:    1 MDSSKVPVKLAKVIKVLGRTGSRGGVTQVRVEFMDDTSRSIIRNVKGPVREDDI 54          
BLAST of FC872786 vs. ExPASy Swiss-Prot
Match: RS28_RAT (40S ribosomal protein S28 OS=Rattus norvegicus GN=Rps28 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.073e-12
Identity = 34/47 (72.34%), Postives = 41/47 (87.23%), Query Frame = 3
Query:   90 IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDI 230
            IK A V KV+GRTGS+GQ TQVRV+F+DD +R I+RNVKGPVREGD+
Sbjct:    9 IKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDV 55          
BLAST of FC872786 vs. ExPASy Swiss-Prot
Match: RS28_PIG (40S ribosomal protein S28 OS=Sus scrofa GN=RPS28 PE=3 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 3.073e-12
Identity = 34/47 (72.34%), Postives = 41/47 (87.23%), Query Frame = 3
Query:   90 IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDI 230
            IK A V KV+GRTGS+GQ TQVRV+F+DD +R I+RNVKGPVREGD+
Sbjct:    9 IKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDV 55          
BLAST of FC872786 vs. ExPASy Swiss-Prot
Match: RS28_MOUSE (40S ribosomal protein S28 OS=Mus musculus GN=Rps28 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.073e-12
Identity = 34/47 (72.34%), Postives = 41/47 (87.23%), Query Frame = 3
Query:   90 IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDI 230
            IK A V KV+GRTGS+GQ TQVRV+F+DD +R I+RNVKGPVREGD+
Sbjct:    9 IKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDV 55          
The following BLAST results are available for this feature:
BLAST of FC872786 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
RS28_MAIZE1.288e-1890.2040S ribosomal protein S28 OS=Zea mays GN=RPS28 PE=... [more]
RS282_ARATH4.894e-1890.2040S ribosomal protein S28-2 OS=Arabidopsis thalian... [more]
RS281_ARATH8.348e-1890.2040S ribosomal protein S28-1 OS=Arabidopsis thalian... [more]
RS28_ICTPU6.191e-1374.4740S ribosomal protein S28 OS=Ictalurus punctatus G... [more]
RS28_DANRE6.191e-1374.4740S ribosomal protein S28 OS=Danio rerio GN=rps28 ... [more]
RS28_DROME1.379e-1268.6340S ribosomal protein S28 OS=Drosophila melanogast... [more]
RS28_SCHPO3.073e-1268.5240S ribosomal protein S28 OS=Schizosaccharomyces p... [more]
RS28_RAT3.073e-1272.3440S ribosomal protein S28 OS=Rattus norvegicus GN=... [more]
RS28_PIG3.073e-1272.3440S ribosomal protein S28 OS=Sus scrofa GN=RPS28 P... [more]
RS28_MOUSE3.073e-1272.3440S ribosomal protein S28 OS=Mus musculus GN=Rps28... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1DH05ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB1DH05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872786 ID=FC872786; Name=FC872786; organism=Citrus clementina; type=EST; length=516bp
GGGGGTTGCAAGAACTGCTGAAAGAAATTAGCAGCCGCTTCTGTCACCTT
CTCTCTCTTCTCGCCTCTTTGCTCAGAATGGATTCTCAGATTAAGCACGC
TGTGGTGGTGAAAGTCATGGGCCGCACTGGTTCAAGAGGACAGGTTACTC
AAGTGAGAGTCAAGTTTTTAGATGATCAGAACCGATTCATCATGAGGAAT
GTGAAGGGACCCGTTAGAGAAGGTGATATCCTCACTTTGCTCGAGTCTGA
GAGAGAAGCTAGGAGGCTCCGTTGAAGAGTCCATCTCTGGTCATACTATC
TCAAACTTTTTGTTGGAAACTAGGGTTCATTACTGTTGTTTTTAGTAGGC
TAGTGATTGGCAATGTTATGAGTTTCACAACTTATTTTGAAGGTTTTCAT
ATTAAGACTGGGTTTTGAGCCATGAATTATATGTTTTGGGATGTTTAATA
TCGTTCTCATTGAAATGGAGTTAAATTTGCTTTAAAGTAAAAAAAAAAAA
AAAAAAAAAAAAAAAA
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