FC872790

Overview
NameFC872790
Unique NameFC872790
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length886
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6379 contig Ccv1_Contig6379:413..1298. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872790 vs. ExPASy Swiss-Prot
Match: APMAP_RAT (Adipocyte plasma membrane-associated protein OS=Rattus norvegicus GN=Apmap PE=2 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 1.972e-32
Identity = 94/270 (34.81%), Postives = 140/270 (51.85%), Query Frame = 1
Query:    7 GRPLGIAFANSDPDADRITMIVADAYKGLLKISGNST---VLLTDEA--EGQKFKLTDGVDVADDGM-IYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATEFS----TYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGKPIAHYYDPE---MSLISSAIKIGDHLYCGSVHHRGILHLDV 777
            GRPLGI    +       T+ V DAYKGL +++       +LL+ E   EG+K    + + +  DG  IYFTD+S+K+  R+Y+L + EG  +GRLL +D VTKE KVL+  L F NGV LSP++  ++  ET+M R R+ Y+ G   G  + F+E +PG PDNIR    G Y +A AT  +    +  D     PFI+++   +     +       S V  V   G      +DP+   ++ +S A +   +LY GS     I  L +
Sbjct:  110 GRPLGIRVGPNG------TLFVVDAYKGLFEVNPQKRSVKLLLSSETPIEGKKMSFVNDLTITRDGRKIYFTDSSSKWQRRDYLLLVMEGTDDGRLLEYDTVTKEVKVLLDQLQFPNGVQLSPEEDFVLVAETAMARIRRVYVSGLMKGGADMFVENMPGFPDNIRPSSSGGYWVAAATIRANPGFSMLDFLSDKPFIKRMIFKLFSQETVMKFVPRYSLVLEVSDSGAFRRSLHDPDGQVVTYVSEAHEHDGYLYLGSFRSPFICRLSL 373          
BLAST of FC872790 vs. ExPASy Swiss-Prot
Match: APMAP_BOVIN (Adipocyte plasma membrane-associated protein OS=Bos taurus GN=APMAP PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.365e-32
Identity = 94/259 (36.29%), Postives = 138/259 (53.28%), Query Frame = 1
Query:    7 GRPLGIAFANSDPDADRITMIVADAYKGLLKISG---NSTVLLTDEA--EGQKFKLTDGVDVADDGM-IYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATEFS----TYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGKPIAHYYDPE---MSLISSAIKIGDHLYCGS 744
            GRPLGI    + P+    T+ V DAYKGL +++       +LL+ E   EG+K    + + V  DG  IYFTD+S+K+  R+Y+L + EG  +GRLL +D  TKE KVL+  L F NGV LSP +  ++  E +M R R+FY+ G   G  + F+E LPG PDNIR    G Y +++A   +    +  D     PF++KV   +     +       S V  +   G  +   +DPE   ++ +S A +   HLY GS
Sbjct:  149 GRPLGI---RAGPNG---TLFVVDAYKGLFEVNPWKREVKLLLSSETPIEGRKMSFLNDLTVTRDGRKIYFTDSSSKWQRRDYLLLLMEGTDDGRLLEYDTQTKEVKVLLDHLRFPNGVQLSPAEDFVLVVELAMVRIRRFYVSGLMKGGADVFVENLPGFPDNIRASSSGGYWVSMAAIRANPGFSMLDFLSERPFLKKVIFKLFSQETVMKFVPRYSLVLELSDSGTFLRSLHDPEGQVVTYVSEAHEHSGHLYLGS 401          
BLAST of FC872790 vs. ExPASy Swiss-Prot
Match: APMAP_MOUSE (Adipocyte plasma membrane-associated protein OS=Mus musculus GN=Apmap PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 5.739e-32
Identity = 95/270 (35.19%), Postives = 141/270 (52.22%), Query Frame = 1
Query:    7 GRPLGIAFANSDPDADRITMIVADAYKGLLKISGNST---VLLTDEA--EGQKFKLTDGVDVADDGM-IYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATEFS----TYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGKPIAHYYDPE---MSLISSAIKIGDHLYCGSVHHRGILHLDV 777
            GRPLGI    + P+    T+ V DAYKGL +++       +LL+ E   EG+K    + + V  DG  IYFTD+S+K+  R+Y+L + E   +GRLL +D VTKE KVL+  L F NGV LSP++  ++  ET+M R R+ Y+ G   G  + F+E +PG PDNIR    G Y +A AT  +    +  D     PFI+++   +     +       S V  V   G      +DP+   ++ +S A +   +LY GS     I  L +
Sbjct:  149 GRPLGI---RAGPNG---TLFVVDAYKGLFEVNPQKRSVKLLLSSETPIEGKKMSFVNDLTVTRDGRKIYFTDSSSKWQRRDYLLLVMEATDDGRLLEYDTVTKEVKVLLDQLQFPNGVQLSPEEDFVLVAETTMARIRRVYVSGLMKGGADMFVENMPGFPDNIRPSSSGGYWVAAATIRANPGFSMLDFLSDKPFIKRMIFKMFSQETVMKFVPRYSLVLEVSDSGAFRRSLHDPDGQVVTYVSEAHEHDGYLYLGSFRSPFICRLSL 412          
BLAST of FC872790 vs. ExPASy Swiss-Prot
Match: APMAP_CHICK (Adipocyte plasma membrane-associated protein OS=Gallus gallus GN=APMAP PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 9.789e-32
Identity = 94/274 (34.31%), Postives = 146/274 (53.28%), Query Frame = 1
Query:    7 GRPLGIAFANSDPDADRITMIVADAYKGLLKIS---GNSTVLLTDEA--EGQKFKLTDGVDVADDGM-IYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALAT-----EFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGKPIAHYYDP---EMSLISSAIKIGDHLYCGSVHHRGILHLDVNQH 786
            GRPLGI    ++      T+ VADAY GL +++   G + +L++ +   EGQK    + + V  DG  IYFTD+S+K+  R+++  + EG  +GRLL +D VTKE KVL+  L F NGV LSP +  ++  ET+M R R++Y+ G   G  + F+E +PGLPDNIR    G Y +A+        FS   D     P+I+++   ++    +  +    S V  +   G     ++DP    +  +S A +   +LY GS     I  L++ QH
Sbjct:  149 GRPLGIRVGPNN------TLFVADAYYGLYEVNPGTGETKMLVSTKTLIEGQKLSFLNDLTVTQDGRKIYFTDSSSKWQRRDFLFLVMEGTDDGRLLEYDTVTKEVKVLMVGLRFPNGVQLSPAEDFVLVLETAMARIRRYYVSGLMKGGADMFVENMPGLPDNIRLSSSGGYWVAMPVVRPNPGFSML-DFLSEKPWIKRMIFKLLSQETVTKLLPKRSLVVELSETGSYRRSFHDPTGLTVPYVSEAHEHNGYLYLGSFRSPFICRLNL-QH 414          
BLAST of FC872790 vs. ExPASy Swiss-Prot
Match: APMAP_HUMAN (Adipocyte plasma membrane-associated protein OS=Homo sapiens GN=APMAP PE=1 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 1.414e-30
Identity = 75/179 (41.90%), Postives = 108/179 (60.34%), Query Frame = 1
Query:    7 GRPLGIAFANSDPDADRITMIVADAYKGLLKISG---NSTVLLTDEA--EGQKFKLTDGVDVADDGM-IYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALAT 525
            GRPLGI    + P+    T+ VADAYKGL +++       +LL+ E   EG+     + + V  DG  IYFTD+S+K+  R+Y+L + EG  +GRLL +D VT+E KVL+  L F NGV LSP +  ++  ET+M R R+ Y+ G   G  + F+E +PG PDNIR    G Y + ++T
Sbjct:  150 GRPLGI---RAGPNG---TLFVADAYKGLFEVNPWKREVKLLLSSETPIEGKNMSFVNDLTVTQDGRKIYFTDSSSKWQRRDYLLLVMEGTDDGRLLEYDTVTREVKVLLDQLRFPNGVQLSPAEDFVLVAETTMARIRRVYVSGLMKGGADLFVENMPGFPDNIRPSSSGGYWVGMST 322          
BLAST of FC872790 vs. ExPASy Swiss-Prot
Match: APMAP_SALSA (Adipocyte plasma membrane-associated protein OS=Salmo salar GN=apmap PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.846e-30
Identity = 89/273 (32.60%), Postives = 143/273 (52.38%), Query Frame = 1
Query:    7 GRPLGIAFANSDPDADRITMIVADAYKGLLKIS---GNSTVLLT--DEAEGQKFKLTDGVDVADDGM-IYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALAT-----EFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGKPIAHYYDPE---MSLISSAIKIGDHLYCGSVHHRGILHLDVNQ 783
            GRPLGI    +       T+ VADAY GL K++   G  T L++      G++    + +DV  DG  +YFTD+S+++  R+Y+  I E   +GR+L +D  TKE  VL+ +L FANG+ L PD+  ++  ET+M R R+ ++ G N G ++ F++ LPG PDNIR    G Y +A++       FS   D   + P+I+K+   +     +       S V  +   G  +  ++DP     + +S A +   HLY GS     +  LD+++
Sbjct:  150 GRPLGIRVGPNG------TLFVADAYLGLFKVNPVTGEVTNLVSAGQMVGGRRLSFVNDLDVTQDGRKVYFTDSSSRWQRRDYLHLIMEATADGRVLEYDTETKEVTVLMENLRFANGIQLFPDEESVLVAETTMARIRRVHVSGLNKGGMDTFVDNLPGFPDNIRRSSSGGYWVAMSAVRPNPGFSML-DFLSQKPWIKKLIFKLFSQDVLMKFVPRYSLVIELQESGACMRSFHDPHGMVAAYVSEAHEHDGHLYLGSFRSPYLCKLDLSK 415          
BLAST of FC872790 vs. ExPASy Swiss-Prot
Match: APMAP_DANRE (Adipocyte plasma membrane-associated protein OS=Danio rerio GN=apmap PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.563e-29
Identity = 86/273 (31.50%), Postives = 143/273 (52.38%), Query Frame = 1
Query:    7 GRPLGIAFANSDPDADRITMIVADAYKGLLKIS---GNSTVLLTDEAE--GQKFKLTDGVDVADDGM-IYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALAT-----EFSTYWDLAYRYPFIRKVSGMVVRYLGMPPMGKSSSGVFIVDLDGKPIAHYYDPE---MSLISSAIKIGDHLYCGSVHHRGILHLDVNQ 783
            GRPLGI    +       T+ VADAY GL +++   G    L++ E    G++    + +DV  DG  +YFTD+S+++  R+++  I E   +GR+L +D  TKE  V++ +L F NG+ L PD+  ++  ET+M R ++ ++ G N G ++ FIE LPG PDNIR    G Y +A++       FS   D   + P+++K+   +     +       S V  +  DG  +  ++DP+    +  S A +   HLY GS     +  LD+++
Sbjct:  149 GRPLGIRVGPNG------TLFVADAYLGLFEVNPVTGEVKSLVSTEKRIAGRRLGFVNDLDVTQDGKKVYFTDSSSRWQRRDFMHLIMEATADGRVLEYDTETKEVNVMMENLRFPNGIQLFPDEESVLVAETTMARIKRVHVSGLNKGGMDTFIENLPGFPDNIRRSSSGGYWVAMSAVRPNPGFSML-DFLSQRPWLKKLIFKLFSQDTLLKFVPRYSLVVELQSDGTCVRSFHDPQGLVSAYSSEAHEYSGHLYLGSFRSPYLCKLDLSK 414          
BLAST of FC872790 vs. ExPASy Swiss-Prot
Match: STS1_ARATH (Strictosidine synthase 1 OS=Arabidopsis thaliana GN=SS1 PE=2 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 1.284e-15
Identity = 57/174 (32.76%), Postives = 91/174 (52.30%), Query Frame = 1
Query:    7 GRPLGIAFANSDPDADRITMIVADAYKGLLKIS--GNSTVLLTDEAEGQKFKLTDGVDV-ADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGE-GHYLIA 516
            GRP GIAF     D     + VADA  GL  IS  G     +TD  +G+ FK  DG+DV    G++YFT  S+++   + ++ +      G+L  +DP TK   VL+  L  + G  +S D + ++  + +    ++++IKG  AG  E F  ++   PDNI+  G  G++ +A
Sbjct:   97 GRPAGIAFNEKTGD-----LYVADAPLGLHVISPAGGLATKITDSVDGKPFKFLDGLDVDPTTGVVYFTSFSSRFSPIQVLIALGLKDATGKLYKYDPSTKVVTVLMEGLSGSAGCAVSSDGSFVLVSQFTKSNIKRYWIKGPKAGSSEDFTNSVSN-PDNIKRIGSTGNFWVA 264          
BLAST of FC872790 vs. ExPASy Swiss-Prot
Match: STS3_ARATH (Strictosidine synthase 3 OS=Arabidopsis thaliana GN=SS3 PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.329e-12
Identity = 54/181 (29.83%), Postives = 86/181 (47.51%), Query Frame = 1
Query:    7 GRPLGIAFANSDPDADRITMIVADAYKGLLKIS--GNSTVLLTDEAEGQKFKLTDGVDV-ADDGMIYFTDASNKYYLREYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGE-GHYLIALATEFST 537
            GRP GIAF     D     + VADA  GL  I   G     + D   G+ F   DG+DV    G++YFT  S+ +  R+ +  +      G+   +DP  K   VL+  L  + G  +S D + ++  + +    ++++IKG  AG  E F  ++   PDNI+  G  G++ +A     +T
Sbjct:   99 GRPAGIAFNTKTGD-----LYVADAALGLHVIPRRGGLAKKIADSVGGKPFLFLDGLDVDPTTGVVYFTSFSSTFGPRDVLKAVATKDSTGKFFKYDPSKKVVTVLMEGLSGSAGCAVSSDGSFVLVGQFTKSNIKRYWIKGSKAGTSEDFTNSVSN-PDNIKRIGSTGNFWVASVVNSAT 273          
BLAST of FC872790 vs. ExPASy Swiss-Prot
Match: STSY_RAUSE (Strictosidine synthase OS=Rauvolfia serpentina GN=STR1 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.585e-11
Identity = 48/161 (29.81%), Postives = 84/161 (52.17%), Query Frame = 1
Query:   64 MIVADAYKGLLKIS---GNSTVLLTDEAEGQKFKLTDGVDVAD-DGMIYFTDASNKYYLR--EYILDIFEGKPNGRLLSFDPVTKETKVLVSDLYFANGVVLSPDQTHLVYCETSMRRCRKFYIKGKNAGRVEKFIETLPGLPDNIRYDGEGHYLIALATE 528
            + + D Y  L  +    G++T L T   +G  FK    V V    G++YFTD S  Y  R  + I+D  +    GRL+ +DP TKET +L+ +L+   G  +S D + ++  E    +  K++++G   G  E  ++ +P  P NI+ + +GH+ ++ + E
Sbjct:  116 LYIVDCYYHLSVVGSEGGHATQLATS-VDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSD--KTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IPN-PGNIKRNADGHFWVSSSEE 271          
The following BLAST results are available for this feature:
BLAST of FC872790 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
APMAP_RAT1.972e-3234.81Adipocyte plasma membrane-associated protein OS=Ra... [more]
APMAP_BOVIN3.365e-3236.29Adipocyte plasma membrane-associated protein OS=Bo... [more]
APMAP_MOUSE5.739e-3235.19Adipocyte plasma membrane-associated protein OS=Mu... [more]
APMAP_CHICK9.789e-3234.31Adipocyte plasma membrane-associated protein OS=Ga... [more]
APMAP_HUMAN1.414e-3041.90Adipocyte plasma membrane-associated protein OS=Ho... [more]
APMAP_SALSA1.846e-3032.60Adipocyte plasma membrane-associated protein OS=Sa... [more]
APMAP_DANRE1.563e-2931.50Adipocyte plasma membrane-associated protein OS=Da... [more]
STS1_ARATH1.284e-1532.76Strictosidine synthase 1 OS=Arabidopsis thaliana G... [more]
STS3_ARATH1.329e-1229.83Strictosidine synthase 3 OS=Arabidopsis thaliana G... [more]
STSY_RAUSE5.585e-1129.81Strictosidine synthase OS=Rauvolfia serpentina GN=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1DH09ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB1DH09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872790 ID=FC872790; Name=FC872790; organism=Citrus clementina; type=EST; length=886bp
GGGGGCGGCCGACCACTGGGAATCGCTTTTGCAAACAGCGATCCCGATGC
CGATCGTATCACTATGATCGTTGCGGACGCTTACAAGGGGCTACTGAAAA
TAAGCGGAAATTCAACAGTGTTGCTAACAGATGAGGCCGAGGGTCAAAAA
TTCAAGCTGACGGATGGGGTAGATGTTGCTGATGATGGCATGATTTATTT
TACAGATGCTTCGAATAAATACTACTTAAGGGAATACATCCTTGATATTT
TTGAGGGAAAGCCTAATGGCAGATTACTAAGCTTTGATCCAGTTACCAAG
GAAACCAAAGTTCTCGTTTCTGACCTCTACTTTGCTAACGGAGTTGTGCT
TTCACCAGACCAAACTCATCTCGTTTATTGTGAGACCTCAATGAGAAGGT
GCAGAAAATTTTACATCAAAGGCAAGAACGCTGGACGTGTGGAGAAGTTC
ATTGAGACTTTGCCAGGCTTGCCTGATAACATACGTTATGATGGAGAAGG
CCATTACTTGATTGCATTAGCAACGGAATTTTCGACTTACTGGGATCTAG
CATACAGATATCCCTTTATCCGAAAGGTTTCAGGAATGGTGGTGAGATAC
CTAGGGATGCCACCCATGGGCAAAAGCAGCAGCGGGGTTTTTATCGTTGA
CTTGGATGGAAAACCAATTGCTCACTATTATGATCCTGAAATGTCACTCA
TTTCCAGTGCAATCAAGATTGGAGATCATCTATACTGTGGTTCCGTACAT
CACCGTGGCATTCTTCACCTTGATGTTAATCAACATCCTGCACGGGCCAT
TATATGAGCAACTTAGTCTGCAAATATACATGATCATAAAAGTGCTGGAT
TCTGCTATACAATGATGACAATTTTGACATTAAAGC
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