FC872802

Overview
NameFC872802
Unique NameFC872802
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length769
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3370 contig Ccv1_Contig3370:1218..1986. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872802 vs. ExPASy Swiss-Prot
Match: GIGAN_ARATH (Protein GIGANTEA OS=Arabidopsis thaliana GN=GI PE=1 SV=2)

HSP 1 Score: 330.487 bits (846), Expect = 6.303e-90
Identity = 164/220 (74.55%), Postives = 188/220 (85.45%), Query Frame = 2
Query:    5 ASPTKAATAVVLQAERELQPWIAKDDDQGQKMWRINQRIVKLIVELMRIYDSPESLVILASASDLLLRATDGMLVDGEACTLPQLELLEATARAIQPILRWGKSGLAIADGLSNLLKCRLPATIRCLSHPSAHVRALSTSVLRDFLHTSSF----KSNIEQVERNGIHGSSLHYFNIDAINWQSDIEKCLTWEAHSRLATGMPIQFLDIAAKELGCTISI 652
            A+P KAA AVVLQAERELQPWIAKDD++GQKMW+INQRIVK++VELMR +D PESLVILASASDLLLRATDGMLVDGEACTLPQLELLEATARAIQP+L WG SGLA+ DGLSNLLKCRLPATIRCLSHPSAHVRALSTSVLRD ++ SS        +   E+NG++  S  +FN  +I+W++DI+ CL WEAHS L+T MP QFLD AA+ELGCTIS+
Sbjct:  952 ATPAKAAAAVVLQAERELQPWIAKDDEEGQKMWKINQRIVKVLVELMRNHDRPESLVILASASDLLLRATDGMLVDGEACTLPQLELLEATARAIQPVLAWGPSGLAVVDGLSNLLKCRLPATIRCLSHPSAHVRALSTSVLRDIMNQSSIPIKVTPKLPTTEKNGMNSPSYRFFNAASIDWKADIQNCLNWEAHSLLSTTMPTQFLDTAARELGCTISL 1171          
BLAST of FC872802 vs. ExPASy Swiss-Prot
Match: GIGAN_ORYSJ (Protein GIGANTEA OS=Oryza sativa subsp. japonica GN=GI PE=2 SV=2)

HSP 1 Score: 306.605 bits (784), Expect = 9.747e-83
Identity = 151/217 (69.59%), Postives = 178/217 (82.03%), Query Frame = 2
Query:    5 ASPTKAATAVVLQAERELQPWIAKDDDQGQKMWRINQRIVKLIVELMRIYDSPESLVILASASDLLLRATDGMLVDGEACTLPQLELLEATARAIQPILRWGKSGLAIADGLSNLLKCRLPATIRCLSHPSAHVRALSTSVLRDFLHTSSFKSN--IEQVERNGIHGSSLHYFNIDAINWQSDIEKCLTWEAHSRLATGMPIQFLDIAAKELGCTIS 649
            ASPTKA+ A+VLQAE++LQPWIA+DD+QGQKMWR+NQRIVKLI ELMR +DSPE+LVILASASDLLLRATDGMLVDGEACTLPQLELLE TARA+  I+ WG SG+++ADGLSNLLKCRL  TIRCLSHPSAHVRALS SVLRD L++    S+  I+   RNGI   +        INWQ+D+E+C+ WEAHSR ATG+ + FL  AAKELGC ++
Sbjct:  943 ASPTKASAAIVLQAEKDLQPWIARDDEQGQKMWRVNQRIVKLIAELMRNHDSPEALVILASASDLLLRATDGMLVDGEACTLPQLELLEVTARAVHLIVEWGDSGVSVADGLSNLLKCRLSTTIRCLSHPSAHVRALSMSVLRDILNSGQINSSKLIQGEHRNGIQSPTYQCLAASIINWQADVERCIEWEAHSRRATGLTLAFLTAAAKELGCPLT 1159          
The following BLAST results are available for this feature:
BLAST of FC872802 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
GIGAN_ARATH6.303e-9074.55Protein GIGANTEA OS=Arabidopsis thaliana GN=GI PE=... [more]
GIGAN_ORYSJ9.747e-8369.59Protein GIGANTEA OS=Oryza sativa subsp. japonica G... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAB3CE11ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3CE11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872802 ID=FC872802; Name=FC872802; organism=Citrus clementina; type=EST; length=769bp
GGGGGCATCACCCACGAAAGCGGCTACAGCTGTTGTTCTTCAGGCGGAAA
GGGAATTGCAACCTTGGATAGCCAAAGATGATGATCAGGGTCAGAAGATG
TGGAGAATCAACCAGCGGATTGTAAAACTTATTGTGGAGCTGATGAGAAT
TTATGACAGTCCAGAGTCACTGGTAATATTGGCAAGCGCATCAGACCTGC
TTCTACGTGCCACAGACGGGATGCTTGTTGATGGTGAAGCTTGCACACTG
CCACAACTTGAGTTACTGGAAGCAACAGCTAGAGCAATTCAGCCCATCCT
GCGGTGGGGAAAGTCTGGATTAGCAATTGCAGATGGTCTTTCAAACCTTT
TAAAGTGTCGTCTACCTGCAACGATCCGATGCCTTTCTCATCCAAGTGCC
CATGTCCGTGCACTGAGCACTTCAGTTCTTCGTGACTTTTTACATACCAG
TTCGTTCAAATCAAATATTGAGCAAGTAGAGAGAAATGGCATCCATGGGT
CTTCGTTACACTACTTCAATATTGATGCAATTAACTGGCAATCTGACATC
GAAAAATGCTTAACTTGGGAAGCCCATAGCCGACTTGCAACAGGAATGCC
GATTCAGTTTCTTGATATCGCTGCCAAGGAATTAGGTTGTACAATATCTA
TATGAAATAAAATAACCTACAGCAGTCATTTGAGGTTTGTGATTATAATT
TATTTTTCCAAGTGAGATTTATGGATGGTAATAACCAGATCAATTGCTTT
GAAAGATATCATTTGGTTT
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