FC872812

Overview
NameFC872812
Unique NameFC872812
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length755
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig651 contig Ccv1_Contig651:184..936. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872812 vs. ExPASy Swiss-Prot
Match: LEC1_MEDTR (Lectin 1 OS=Medicago truncatula GN=LEC1 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.855e-13
Identity = 56/190 (29.47%), Postives = 92/190 (48.42%), Query Frame = 3
Query:   78 AAKIRVGRV*YSQPVTAWP------AMIKTTFTIRIS-PYSNTTDSADGMTFVFATNTTPPTDXXXXXXXXXXXXXXXX------TMELDPYKNDYCSDPDAN-HMGIDIANLTSNPSKSLNSSGIDLKSGRPIHVQIYYDGWTKILYVYVAYAGNPLQKLIERPILLSETIPSSVYVGFTASTGPDFSE 605
            A K  +GR  YS P+  W       A  +T FT  I+ PYS+    ADG+ F  A   T P +                       +E+D + N +  DP  N H+GI++     N  KS++++   L++GR  +V + +D  T +L V ++Y G P   ++   + L + +P  V +GF+A+TG +F+E
Sbjct:   67 AVKNSIGRALYSAPIHIWDSKTGDVANFETLFTFAITAPYSSNV--ADGLAFFIAPVDTQPQNIGRAGFLGVFNSETYNKSIQTVAVEIDTFHNTW--DPKINRHIGINV-----NCIKSISTTSWVLENGREANVLVRFDAHTNVLSVVLSYPGLPDSYILSDVVPLKDIVPEWVRIGFSAATGAEFAE 247          
BLAST of FC872812 vs. ExPASy Swiss-Prot
Match: LECS_VATMA (Seed lectin OS=Vatairea macrocarpa PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.352e-11
Identity = 56/198 (28.28%), Postives = 88/198 (44.44%), Query Frame = 3
Query:   93 VGRV*YSQPVTAWP------AMIKTTFTIRISPYSNTTDSADGMTFVFATNTTPPTDXXXXXXXXXXXXXXXXTM--ELDPYKNDYCSDPDANHMGIDIANLTSNPSKSLNSSGIDLKSGRPIHVQIYYDGWTKILYVYVAYAGNPLQKLIERPILLSETIPSSVYVGFTASTG--PDFSETHHVLDCTFT-TFPLPS 653
            +GR  Y+ P+  W       A   T+F+  +    + + +ADG+ F  A   T P                  T+  E D + N +  DP A H+GI++     N  +S+       ++G+  +V I Y+  TK L   + Y  N    ++   + L   +P  V VGF+A++G   D  ETH VLD +FT T   PS
Sbjct:   47 LGRALYAAPIHIWDDSTDRVASFATSFSFVVEA-PDESKTADGIAFFLAPPDTQPQKDGGFLGLFNDSNKSIQTVAVEFDTFSNTW--DPSARHIGINV-----NSIESMKYVKWGWENGKVANVYISYEASTKTLTASLTYPSNATSYIVSANVDLKSALPEWVRVGFSATSGLSRDHVETHDVLDWSFTSTLQAPS 236          
The following BLAST results are available for this feature:
BLAST of FC872812 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
LEC1_MEDTR7.855e-1329.47Lectin 1 OS=Medicago truncatula GN=LEC1 PE=3 SV=1[more]
LECS_VATMA7.352e-1128.28Seed lectin OS=Vatairea macrocarpa PE=1 SV=1[more]
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Properties
Property NameValue
Genbank descriptionKN0AAB3CF10ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3CF10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872812 ID=FC872812; Name=FC872812; organism=Citrus clementina; type=EST; length=755bp
CCGGGGGGCGCAATGACTACCTTTTATGGTTACTTGTTCCTCACATCAGA
CCCTTCACCACAATTTTAAGATCACCTGCCGCTAAAATAAGAGTTGGACG
GGTTTAATACAGCCAGCCTGTGACTGCATGGCCAGCTATGATTAAAACCA
CCTTCACCATTAGGATCTCACCCTACTCAAATACAACGGATTCTGCAGAT
GGCATGACGTTTGTTTTTGCAACCAATACCACCCCTCCAACTGATAACTC
CGCCGGCGGAAATCTTGGACTGAGTAACGGTGTTTCGCAATTAACCATGG
AGCTGGACCCTTACAAGAACGACTACTGTTCTGATCCAGATGCTAACCAT
ATGGGCATTGACATAGCAAACTTAACATCGAATCCATCCAAGAGTCTCAA
CAGCTCTGGTATTGATCTAAAAAGTGGAAGACCTATCCATGTTCAAATTT
ATTACGACGGATGGACGAAAATACTCTATGTTTATGTGGCATATGCGGGG
AACCCACTTCAAAAGCTTATTGAAAGACCTATCCTCTTGTCAGAAACAAT
TCCAAGCTCAGTCTATGTTGGCTTCACAGCATCCACAGGGCCCGACTTTT
CAGAAACCCATCACGTGCTTGATTGTACCTTCACAACGTTCCCATTGCCT
TCTTCTTCTCTGGAGGAGCAAAACCTGGAGATGCCAATATAATTCCAAAC
CGTCCTTGATAAACCATGTCACATAAAACATTATAATAAAATAAAAAATA
ACTAA
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