FC872814

Overview
NameFC872814
Unique NameFC872814
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length957
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12312 contig Ccv1_Contig12312:381..1334. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872814 vs. ExPASy Swiss-Prot
Match: BCS1B_DICDI (Probable mitochondrial chaperone BCS1-B OS=Dictyostelium discoideum GN=bcsl1b PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 3.085e-26
Identity = 73/216 (33.80%), Postives = 115/216 (53.24%), Query Frame = 3
Query:  333 YDAIRWDSVKLEHPAT---FDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQL-GNVTRDSDLRTLLLSTGNRSILVIEDIDCSVDLPDR----RNGNENNXXXXXXXXXXXXVRKNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYC 956
            Y ++  D  +  HP       ++ ++      I++D+ +F+   ++Y   G  ++RGYLLYGPPGTGKSS + A+A  L+  +  L L G    D+ L  LL +   RSI+++EDID ++   +     ++ + N                N +  +GG     LT SGLLN +DG+ +S G  RI+  TTNH E+LD  L+RPGR+D+ I +  C
Sbjct:  187 YTSMGTDWRRFGHPRRKRPISSVILDKGKSELIIQDVKKFLNNSDWYNDRGIPYRRGYLLYGPPGTGKSSFITALAGELQLSICILNLAGKSVSDTSLNQLLATAPQRSIILLEDIDSAIQTGNHDLSAKSNSANAPSISSGGLQYQGYYGNPSVSSGGSA---LTFSGLLNALDGVAASEG--RILFMTTNHLEKLDKVLIRPGRVDLQIEIGLC 397          
BLAST of FC872814 vs. ExPASy Swiss-Prot
Match: BCS1_XENLA (Mitochondrial chaperone BCS1 OS=Xenopus laevis GN=bcs1l PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.887e-24
Identity = 65/191 (34.03%), Postives = 105/191 (54.97%), Query Frame = 3
Query:  387 TLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVTRDSDLRTLLLSTG-NRSILVIEDIDCSVDLPDRRNGNENNXXXXXXXXXXXXVRKNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYC 956
            ++ +E  +   I++D+  F+   ++Y   G  ++RGYLLYGPPG GKSS + A+A  L++ +  + L + +   D    LLS    +SI+++ED+D +    D                       NK +    +G   LT SGLLN +DG+ S+  + RI+  TTNH +RLDPAL+RPGR+D+  ++ +C
Sbjct:  190 SVVLEQGISEKIVQDVKGFIENPKWYSDRGIPYRRGYLLYGPPGCGKSSFITALAGELEYSICLMSLSDSSLSDDRLNHLLSVAPQQSIILLEDVDAAFVSRD----------------------LNKQNPTAYQGMGRLTFSGLLNALDGVAST--EARIVFMTTNHIDRLDPALIRPGRVDVKQYVGHC 356          
BLAST of FC872814 vs. ExPASy Swiss-Prot
Match: BCS1_SCHPO (Probable mitochondrial chaperone bcs1 OS=Schizosaccharomyces pombe GN=SPAC644.07 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.887e-24
Identity = 70/198 (35.35%), Postives = 109/198 (55.05%), Query Frame = 3
Query:  369 HPAT---FDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNV-TRDSDLRTLLLSTGNRSILVIEDIDCSVDLPDRRNGNENNXXXXXXXXXXXXVRKNKTDFAGGKGQHM-LTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHM 947
            HP +     ++ +E ++K  I +D+  F+R  ++Y   G  ++RGYLLYGPPG+GK+S + A+A  L +D+  L L      D  L  LL +   ++++++ED+D +    +R                           +G  G H  +T SGLLN +DG+ SS  DERII  TTNH E+LDPAL+RPGR+D+  ++
Sbjct:  200 HPRSKRMLSSVVLESNVKKMITDDVHDFLRNSQWYDTRGIPYRRGYLLYGPPGSGKTSFLYALAGELDYDICVLNLAEKGLTDDRLNHLLSNVPPKAVVLLEDVDSAFQGRER---------------------------SGEVGFHANVTFSGLLNALDGVTSS--DERIIFMTTNHPEKLDPALVRPGRVDVKAYL 368          
BLAST of FC872814 vs. ExPASy Swiss-Prot
Match: BCS1A_DICDI (Probable mitochondrial chaperone BCS1-A OS=Dictyostelium discoideum GN=bcs1la PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 7.111e-23
Identity = 71/196 (36.22%), Postives = 103/196 (52.55%), Query Frame = 3
Query:  378 TFDTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNV-TRDSDLRTLLLSTGNRSILVIEDIDCSV----DLPDRRNGNENNXXXXXXXXXXXXVRKNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMS 950
            +  ++ +  DLK+ ++ED+  F+  + +Y+  G  ++RGYLLYG PG GKSSL+ A+A  L  D+  + L +    D  +  LL +   +SIL+IEDID +     D  D  N N NN                          + LT SGLLN +DG+ S  G  RI+  TTN  E LD AL+R GR+D+ I +S
Sbjct:  185 SLSSVILADDLKSKLIEDIKSFITNESWYRNRGIPYRRGYLLYGEPGNGKSSLINAIAGELNLDICIVSLSSKDIDDKQINHLLNNAPPKSILLIEDIDAAFKSHRDNVDSNNNNSNN-------------------------NNSLTYSGLLNALDGVASQEG--RILFMTTNKIELLDSALIREGRIDLKIKVS 353          
BLAST of FC872814 vs. ExPASy Swiss-Prot
Match: BCS1_HUMAN (Mitochondrial chaperone BCS1 OS=Homo sapiens GN=BCS1L PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 2.069e-22
Identity = 65/192 (33.85%), Postives = 102/192 (53.12%), Query Frame = 3
Query:  384 DTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVTRDSDLRTLLLSTG-NRSILVIEDIDCSVDLPDRRNGNENNXXXXXXXXXXXXVRKNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYC 956
            +++ ++  L   I+ D+  F+   ++Y   G  ++RGYLLYGPPG GKSS + A+A  L+  +  L L + +   D    LLS    +S++++ED+D +    D    N                          +G   LT SGLLN +DG+ S+  + RI+  TTNH +RLDPAL+RPGR+D+  ++ YC
Sbjct:  189 NSVVLQQGLADRIVRDVQEFIDNPKWYTDRGIPYRRGYLLYGPPGCGKSSFITALAGELEHSICLLSLTDSSLSDDRLNHLLSVAPQQSLVLLEDVDAAFLSRDLAVENPVKY----------------------QGLGRLTFSGLLNALDGVAST--EARIVFMTTNHVDRLDPALIRPGRVDLKEYVGYC 356          
BLAST of FC872814 vs. ExPASy Swiss-Prot
Match: BCS1_YEAST (Mitochondrial chaperone BCS1 OS=Saccharomyces cerevisiae GN=BCS1 PE=1 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 2.702e-22
Identity = 66/187 (35.29%), Postives = 102/187 (54.55%), Query Frame = 3
Query:  387 TLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLG-NVTRDSDLRTLLLSTGNRSILVIEDIDCSVDLPDRRNGNENNXXXXXXXXXXXXVRKNKTDFAGGKGQH-MLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHI 941
            ++ ++  +K  I++D+  F++  ++Y   G  ++RGYLLYGPPG+GK+S + A+A  L +++  L L  N   D  L  L+ +   RSIL++EDID +                            NK    G +G H  +T SGLLN +DG+ SS  +E I   TTNH E+LD A++RPGR+D  +
Sbjct:  227 SVILDSGIKEGILDDVYDFMKNGKWYSDRGIPYRRGYLLYGPPGSGKTSFIQALAGELDYNICILNLSENNLTDDRLNHLMNNMPERSILLLEDIDAAF---------------------------NKRSQTGEQGFHSSVTFSGLLNALDGVTSS--EETITFMTTNHPEKLDAAIMRPGRIDYKV 384          
BLAST of FC872814 vs. ExPASy Swiss-Prot
Match: BCS1_MOUSE (Mitochondrial chaperone BCS1 OS=Mus musculus GN=Bcs1l PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 6.020e-22
Identity = 65/192 (33.85%), Postives = 103/192 (53.65%), Query Frame = 3
Query:  384 DTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVTRDSDLRTLLLSTG-NRSILVIEDIDCSVDLPDRRNGNENNXXXXXXXXXXXXVRKNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYC 956
            D++ ++  L   I++D+  F+   ++Y   G  ++RGYLLYGPPG GKSS + A+A  L+  +  L L + +   D    LLS    +S++++ED+D +    D    N                          +G   LT SGLLN +DG+ S+  + RI+  TTN+ +RLDPAL+RPGR+D+  ++ YC
Sbjct:  189 DSVVLQQGLADRIVKDIREFIDNPKWYIDRGIPYRRGYLLYGPPGCGKSSFITALAGELEHSICLLSLTDSSLSDDRLNHLLSVAPQQSLVLLEDVDAAFLSRDLAVENPIKY----------------------QGLGRLTFSGLLNALDGVAST--EARIVFMTTNYIDRLDPALIRPGRVDLKEYVGYC 356          
BLAST of FC872814 vs. ExPASy Swiss-Prot
Match: BCS1_BOVIN (Mitochondrial chaperone BCS1 OS=Bos taurus GN=BCS1L PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 6.020e-22
Identity = 65/192 (33.85%), Postives = 102/192 (53.12%), Query Frame = 3
Query:  384 DTLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVTRDSDLRTLLLSTG-NRSILVIEDIDCSVDLPDRRNGNENNXXXXXXXXXXXXVRKNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYC 956
            +++ +E  +   I+ D+  F+   ++Y   G  ++RGYLLYGPPG GKSS + A+A  L+  +  L L + +   D    LLS    +S++++ED+D +    D    N                          +G   LT SGLLN +DG+ S+  + RI+  TTNH +RLDPAL+RPGR+DM  ++ +C
Sbjct:  189 NSVVLEQGVTERIVRDIREFIDNPKWYIDRGIPYRRGYLLYGPPGCGKSSFITALAGELQHSICLLSLTDSSLSDDRLNHLLSVAPQQSLVLLEDVDAAFLSRDLAAENPIKY----------------------QGLGRLTFSGLLNALDGVAST--EARIVFMTTNHIDRLDPALIRPGRVDMKEYVGHC 356          
BLAST of FC872814 vs. ExPASy Swiss-Prot
Match: BCS1_DANRE (Mitochondrial chaperone BCS1 OS=Danio rerio GN=bcs1l PE=2 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.752e-21
Identity = 65/191 (34.03%), Postives = 102/191 (53.40%), Query Frame = 3
Query:  387 TLAMEPDLKATIMEDLDRFVRRKEFYKRVGRAWKRGYLLYGPPGTGKSSLVAAMANYLKFDVFDLQLGNVTRDSDLRTLLLSTG-NRSILVIEDIDCSVDLPDRRNGNENNXXXXXXXXXXXXVRKNKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYC 956
            ++ +E  +   I++D+  F+   ++Y   G  ++RGYLLYGPPG GKSS + A+A  L + +  + L + +   D    LLS    +SI+++ED+D +  +       EN                        +G   LT SGLLN +DG+ SS  + RI+  TTN  ERLDPAL+RPGR+D+  ++ +C
Sbjct:  190 SVVLESGVAERIVDDVKEFIGNPKWYTDRGIPYRRGYLLYGPPGCGKSSFITALAGELGYSICLMSLSDRSLSDDRLNHLLSVAPQQSIILLEDVDAAF-VSRELLPTENPLAY--------------------QGMGRLTFSGLLNALDGVASS--EARIVFMTTNFIERLDPALVRPGRVDLKQYVGHC 357          
BLAST of FC872814 vs. ExPASy Swiss-Prot
Match: YL572_MIMIV (Putative AAA family ATPase L572 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L572 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.709e-14
Identity = 52/143 (36.36%), Postives = 76/143 (53.15%), Query Frame = 3
Query:  534 LVAAMANYLKFDVFDLQLGNVTRDSDLRTLLLSTG-NRSILVIEDIDCSVDLPDRRNGNENNXXXXXXXXXXXXVRKNKTD-FAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYC 956
            ++ A++ + K  +  L L N+  D++L  LL +     +ILV+EDIDC+ +    R   E                K   D     +    LTLSG+LN +DG+++S G  RI++ TTNH E LDPAL+R GR+DM I  S C
Sbjct:    1 MIKAISTHTKRHIHYLILNNIQDDNELINLLNAVNCKETILVLEDIDCASEAVKSRAKEEETVVEKVTDDKSTLENKILADQLKKVEKVSKLTLSGILNSLDGIFNSEG--RIVIMTTNHSEVLDPALIRRGRIDMQIEFSNC 141          
The following BLAST results are available for this feature:
BLAST of FC872814 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
BCS1B_DICDI3.085e-2633.80Probable mitochondrial chaperone BCS1-B OS=Dictyos... [more]
BCS1_XENLA2.887e-2434.03Mitochondrial chaperone BCS1 OS=Xenopus laevis GN=... [more]
BCS1_SCHPO2.887e-2435.35Probable mitochondrial chaperone bcs1 OS=Schizosac... [more]
BCS1A_DICDI7.111e-2336.22Probable mitochondrial chaperone BCS1-A OS=Dictyos... [more]
BCS1_HUMAN2.069e-2233.85Mitochondrial chaperone BCS1 OS=Homo sapiens GN=BC... [more]
BCS1_YEAST2.702e-2235.29Mitochondrial chaperone BCS1 OS=Saccharomyces cere... [more]
BCS1_MOUSE6.020e-2233.85Mitochondrial chaperone BCS1 OS=Mus musculus GN=Bc... [more]
BCS1_BOVIN6.020e-2233.85Mitochondrial chaperone BCS1 OS=Bos taurus GN=BCS1... [more]
BCS1_DANRE1.752e-2134.03Mitochondrial chaperone BCS1 OS=Danio rerio GN=bcs... [more]
YL572_MIMIV2.709e-1436.36Putative AAA family ATPase L572 OS=Acanthamoeba po... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAB3CF12ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3CF12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872814 ID=FC872814; Name=FC872814; organism=Citrus clementina; type=EST; length=957bp
GGGCTAAGATCGGTCCCAGCATCGAAAGGCTCAAAATATGCAAAACTCCA
AATGAAAAAGTCATCACAATCCGCCTGGAAAAGAACGAACAGATTATTGA
TTCTTTCCGAGGGGTACAGCTCAGATGGAGGTTTGCTCTTGTGGAGGCAG
CCGACGGAAAGGGTAATTCCCATTCTATGAGGCCTGAGAAGCGACTATTT
GAGCTTACATTTCACCAGACTCACAAAGACATGGTCTTGAACTCTTACCT
GCCACATGTAATCGAGCTAGCAAAGGATATGAAAGATAAGACAAGGGTTT
TGAAGATGTACACACTCCATAGGGTTCCAGATTATGATGCGATCCGGTGG
GATTCGGTCAAACTTGAGCATCCAGCAACCTTTGACACTTTGGCCATGGA
ACCAGATCTTAAAGCTACTATCATGGAGGATCTCGATAGGTTTGTTAGGA
GGAAGGAGTTTTACAAGAGAGTTGGCAGAGCATGGAAACGTGGGTACTTG
CTGTACGGACCTCCAGGCACTGGCAAATCAAGCTTGGTTGCAGCCATGGC
CAACTATCTCAAGTTTGATGTCTTTGATTTGCAGCTCGGAAATGTTACCC
GTGACTCCGATCTAAGGACTCTCCTGCTCAGTACTGGGAATAGATCAATC
CTTGTCATCGAAGACATTGATTGCAGTGTCGACTTGCCTGATCGCCGAAA
TGGAAATGAAAATAATGCTGATGCTCAGCAGTCCAAGGCCGCGGGCGCAG
CTGTCCGCAAAAACAAGACCGACTTCGCTGGCGGAAAGGGACAGCATATG
TTGACATTGTCGGGGCTGCTGAACTTCATTGATGGACTATGGTCCAGTTG
TGGTGACGAGAGGATTATCGTATTCACGACCAACCACAAGGAGAGGCTGG
ATCCTGCTTTGCTGCGTCCAGGACGCATGGACATGCACATTCACATGTCA
TATTGCG
back to top