FC872820

Overview
NameFC872820
Unique NameFC872820
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10069 contig Ccv1_Contig10069:1..700. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872820 vs. ExPASy Swiss-Prot
Match: GI1L2_ARATH (Probable gibberellin receptor GID1L2 OS=Arabidopsis thaliana GN=GID1L2 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.449e-18
Identity = 54/143 (37.76%), Postives = 79/143 (55.24%), Query Frame = 1
Query:  277 LEFTVPLDFTNKVPLVVYFHGGAFVISSSAYPKYHTTLNNLVAEADIIVVSVNYRLAPEHPLPAAFEDSLGALKWVASHAKGEGDGNRPLPVLNQEAWLQEFVDFD-KVFLAGDNAGSSIAHYLGLRITDEVRDLKILSIVMI 702
            LE T PL  T  VP++++FHGG+F  SS+    Y T    LV    ++VVSV+YR +PEH  P A++D   AL WV S                   WLQ   D +  V+LAGD++G +IAH + +R T+E   +K+L  +++
Sbjct:   94 LELTKPLSTTEIVPVLIFFHGGSFTHSSANSAIYDTFCRRLVTICGVVVVSVDYRRSPEHRYPCAYDDGWNALNWVKS-----------------RVWLQSGKDSNVYVYLAGDSSGGNIAHNVAVRATNE--GVKVLGNILL 217          
BLAST of FC872820 vs. ExPASy Swiss-Prot
Match: GID1_ORYSJ (Gibberellin receptor GID1 OS=Oryza sativa subsp. japonica GN=GID1 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.022e-16
Identity = 47/130 (36.15%), Postives = 68/130 (52.31%), Query Frame = 1
Query:  277 LEFTVPLDFTNKVPLVVYFHGGAFVISSSAYPKYHTTLNNLVAEADIIVVSVNYRLAPEHPLPAAFEDSLGALKWVASHAKGEGDGNRPLPVLNQEAWLQEFVDFDKVFLAGDNAGSSIAHYLGLRITDE 666
            LEF          P++++FHGG+FV SS++   Y +     V  +  +VVSVNYR APEH  P A++D   ALKWV S       G+                   +VFL+GD++G +IAH++ +R  DE
Sbjct:  101 LEFLTDAPAAEPFPVIIFFHGGSFVHSSASSTIYDSLCRRFVKLSKGVVVSVNYRRAPEHRYPCAYDDGWTALKWVMSQPFMRSGGDAQA----------------RVFLSGDSSGGNIAHHVAVRAADE 214          
BLAST of FC872820 vs. ExPASy Swiss-Prot
Match: GI1L1_ARATH (Probable gibberellin receptor GID1L1 OS=Arabidopsis thaliana GN=GID1L1 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.959e-15
Identity = 50/129 (38.76%), Postives = 70/129 (54.26%), Query Frame = 1
Query:  271 SQLEFTVPLDFTNKVPLVVYFHGGAFVISSSAYPKYHTTLNNLVAEADIIVVSVNYRLAPEHPLPAAFEDSLGALKWVASHAKGEGDGNRPLPVLNQEAWLQEFVDFD-KVFLAGDNAGSSIAHYLGLR 654
            S L+   P+D  + VP++++FHGG+F  SS+    Y T    LV     +VVSVNYR APE+P P A++D   AL WV                 N  +WL+   D    +FLAGD++G +IAH + LR
Sbjct:   93 SILDLEKPVD-GDIVPVILFFHGGSFAHSSANSAIYDTLCRRLVGLCKCVVVSVNYRRAPENPYPCAYDDGWIALNWV-----------------NSRSWLKSKKDSKVHIFLAGDSSGGNIAHNVALR 203          
BLAST of FC872820 vs. ExPASy Swiss-Prot
Match: GI1L3_ARATH (Probable gibberellin receptor GID1L3 OS=Arabidopsis thaliana GN=GID1L3 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.444e-15
Identity = 45/123 (36.59%), Postives = 65/123 (52.85%), Query Frame = 1
Query:  313 VPLVVYFHGGAFVISSSAYPKYHTTLNNLVAEADIIVVSVNYRLAPEHPLPAAFEDSLGALKWVASHAKGEGDGNRPLPVLNQEAWLQEFVDFD-KVFLAGDNAGSSIAHYLGLRITDEVRDL 678
            VP++V+FHGG+F  SS+    Y T    LV     +VVSVNYR APE+  P A++D    LKWV                 N  +WL+   D   ++FLAGD++G +I H + +R  +   D+
Sbjct:  104 VPVIVFFHGGSFAHSSANSAIYDTLCRRLVGLCGAVVVSVNYRRAPENRYPCAYDDGWAVLKWV-----------------NSSSWLRSKKDSKVRIFLAGDSSGGNIVHNVAVRAVESRIDV 209          
The following BLAST results are available for this feature:
BLAST of FC872820 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
GI1L2_ARATH1.449e-1837.76Probable gibberellin receptor GID1L2 OS=Arabidopsi... [more]
GID1_ORYSJ3.022e-1636.15Gibberellin receptor GID1 OS=Oryza sativa subsp. j... [more]
GI1L1_ARATH1.959e-1538.76Probable gibberellin receptor GID1L1 OS=Arabidopsi... [more]
GI1L3_ARATH7.444e-1536.59Probable gibberellin receptor GID1L3 OS=Arabidopsi... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAB3CG08ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3CG08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872820 ID=FC872820; Name=FC872820; organism=Citrus clementina; type=EST; length=703bp
GGGGGAGGTTGGAAGAAATCTTCTTCTAACTTTATTTTAAGCCGCGTAAA
GGATCTCAACTCAAACAAACGATACTTGCATCTCTCTCAGAATTCCAAAA
TGGGTTCAATCAAATCTGCAATAAGTCTCGAGGGAGGTTTTTCCTTATCT
TCTACTATACTAACATGGGACGGTGGAAAGACTTGCGGGATCTGAAGTGG
CTGCCGCTGGCTTGAATACTGCAACCAACGTTCTATCCAAAAACGTCCTG
ATCATACCACATACGCGGCGTCTCAGCTAGAGTTTACCGTCCCACTAGAC
TTCACAAATAAGGTTCCCCTCGTTGTATACTTTCACGGTGGTGCCTTTGT
CATATCATCATCCGCATATCCCAAATACCACACCACCCTCAACAACCTGG
TTGCCGAGGCTGACATCATTGTTGTCTCCGTTAACTACAGATTGGCCCCG
GAACATCCTCTTCCCGCTGCATTTGAGGACTCTTTGGGTGCACTCAAGTG
GGTGGCTTCCCATGCTAAGGGTGAGGGAGATGGCAACCGCCCTCTACCTG
TACTTAATCAAGAAGCTTGGCTCCAGGAATTTGTTGACTTCGACAAGGTC
TTTTTGGCTGGCGACAACGCTGGTTCTTCTATTGCACATTACTTGGGCCT
GCGGATCACGGACGAGGTCCGGGACTTGAAGATTCTAAGTATTGTTATGA
TCA
back to top