FC872824

Overview
NameFC872824
Unique NameFC872824
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length826
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10071 contig Ccv1_Contig10071:1..826. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872824 vs. ExPASy Swiss-Prot
Match: AGD11_ARATH (Probable ADP-ribosylation factor GTPase-activating protein AGD11 OS=Arabidopsis thaliana GN=AGD11 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.221e-35
Identity = 77/164 (46.95%), Postives = 111/164 (67.68%), Query Frame = 3
Query:  111 ALFAMENLMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSPDDKMGDAEFYITPFLEALK-MRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNVEVGEVEIQLEWIDI 599
            ++  M   +GL++V+V++G NLAVRDV++SDPYV++ +G+Q +KTRV+KNN+NP WNE L LSI +   P+K+ VYDKDTFS DD MG+AE  I P + A K      +     +     S+EN L  +  I+  DGK+ Q++ LRL+NVE G +EIQLE + +
Sbjct:  220 SMAGMVEFVGLIKVNVVKGTNLAVRDVMTSDPYVILALGQQSVKTRVIKNNLNPVWNETLMLSIPEPMPPLKVLVYDKDTFSTDDFMGEAEIDIQPLVSAAKAYETSSIKEPMQLGSWVASKENTLVSDGIILLEDGKVKQDISLRLQNVERGVLEIQLECLPL 383          
BLAST of FC872824 vs. ExPASy Swiss-Prot
Match: AGD13_ARATH (Probable ADP-ribosylation factor GTPase-activating protein AGD13 OS=Arabidopsis thaliana GN=AGD13 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 7.898e-33
Identity = 71/160 (44.38%), Postives = 109/160 (68.12%), Query Frame = 3
Query:  123 MENLMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSPDDKMGDAEFYITPFL-EALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNVEVGEVEIQLEWIDI 599
            M   +GLL+V + +G NLA+RD++SSDPYVV+ +GKQKL+T V+ +N+NP WN++L LS+ +S  P+KL VYD DTFS DD MG+A+  I P +  A+      +     + K   S +N L ++S I   DGK+ Q + ++L+NVE GE+E+++EW+ +
Sbjct:  175 MVEFIGLLKVTIKKGTNLAIRDMMSSDPYVVLNLGKQKLQTTVMNSNLNPVWNQELMLSVPESYGPVKLQVYDYDTFSADDIMGEADIDIQPLITSAMAFGDPEMFGDMQIGKWLKSHDNPLIDDSIINIVDGKVKQEVQIKLQNVESGELELEMEWLPL 334          
BLAST of FC872824 vs. ExPASy Swiss-Prot
Match: AGD12_ARATH (ADP-ribosylation factor GTPase-activating protein AGD12 OS=Arabidopsis thaliana GN=AGD12 PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.541e-31
Identity = 70/163 (42.94%), Postives = 108/163 (66.26%), Query Frame = 3
Query:  114 LFAMENLMGLLRVHVLRGVNLAVRDVVSSDPYVVIKMGKQKLKTRVVKNNVNPEWNEDLTLSISDSNLPIKLTVYDKDTFSPDDKMGDAEFYITPFL-EALKMRLEGLPNGTIVTKIQPSRENCLAEESHIVWTDGKLVQNLFLRLRNVEVGEVEIQLEWIDI 599
            L  M   +GLL+V + +G N+A+RD++SSDPYVV+ +G+QK ++ VVK+N+NP WNE+L LS+  +   +KL V+D DTFS DD MG+AE  I P +  A+      +     + K   S +N L E+S I   DGK+ Q + ++L+NVE GE+E+++EW+ +
Sbjct:  173 LEGMVEFIGLLKVTIKKGTNMAIRDMMSSDPYVVLTLGQQKAQSTVVKSNLNPVWNEELMLSVPHNYGSVKLQVFDYDTFSADDIMGEAEIDIQPLITSAMAFGDPEMFGDMQIGKWLKSHDNALIEDSIINIADGKVKQEVQIKLQNVESGELELEMEWLPL 335          
The following BLAST results are available for this feature:
BLAST of FC872824 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
AGD11_ARATH2.221e-3546.95Probable ADP-ribosylation factor GTPase-activating... [more]
AGD13_ARATH7.898e-3344.38Probable ADP-ribosylation factor GTPase-activating... [more]
AGD12_ARATH2.541e-3142.94ADP-ribosylation factor GTPase-activating protein ... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAB3CG12ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3CG12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872824 ID=FC872824; Name=FC872824; organism=Citrus clementina; type=EST; length=826bp
GGGGAATCAGCGCGTGACTCTTTGCTTGTGATATAACATTTTCGCTTTAC
AGCATTAGCGCGAGTGTTTTTGAAAGATAATAAAGGAAAGAAAAGTTTTA
ATCTTTCATAGCGTTGTTTGCAATGGAGAATTTGATGGGTTTGCTCAGAG
TTCATGTTCTGAGAGGAGTGAATCTTGCCGTCAGAGATGTCGTCAGCAGT
GATCCTTATGTTGTGATCAAGATGGGAAAACAGAAGTTGAAGACTCGAGT
TGTGAAGAACAATGTCAATCCTGAGTGGAATGAAGATTTAACCCTCTCTA
TTTCAGACTCTAATCTTCCAATCAAGCTTACAGTTTATGACAAAGACACA
TTCAGTCCAGATGACAAAATGGGAGATGCAGAATTTTACATCACTCCATT
TTTGGAAGCTCTAAAGATGCGATTGGAAGGCCTCCCAAATGGAACCATTG
TCACGAAAATACAGCCAAGCAGGGAGAACTGCCTTGCTGAAGAGAGCCAC
ATTGTCTGGACTGATGGTAAGCTTGTTCAAAACTTGTTTCTAAGACTTCG
AAATGTTGAGGTGGGTGAAGTTGAAATCCAATTAGAGTGGATCGACATAC
CTGGTTCCAGGGGCCTGTAGATGACATCTACGCACTCTCAGCTGCTAATA
AGCATAGTGTACAAAAAAGTCTCTGAGCATCATTAACGGGCTCAGTTGGA
GTTTCTTCAATCAGTTCCTCTTATTCACATAAATATCTTGCTGCTTACCT
TTTGACTGGATTTTAATTATTAATGCTGTGCAAATATTTTGCTGCATAAA
AAAAAAAAAAAAAAAAAAAAAAAAAA
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