FC872828

Overview
NameFC872828
Unique NameFC872828
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length776
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10073 contig Ccv1_Contig10073:1..776. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872828 vs. ExPASy Swiss-Prot
Match: THD1_ARATH (Threonine dehydratase biosynthetic, chloroplastic OS=Arabidopsis thaliana GN=OMR1 PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.750e-31
Identity = 62/84 (73.81%), Postives = 72/84 (85.71%), Query Frame = 2
Query:    2 GRLSVENEVLCRFIFPERPGSLMKFLDAFSPRWNISLFHYRGQGETGANILVGIQVPENELAEFHGRANRLGYDYAVVTDDNNF 253
            GR +V +EVLCRF FPERPG+LM FLD+FSPRWNI+LFHYRGQGETGAN+LVGIQVPE E+ EF  RA  LGYDY +V+DD+ F
Sbjct:  504 GRSTVGDEVLCRFTFPERPGALMNFLDSFSPRWNITLFHYRGQGETGANVLVGIQVPEQEMEEFKNRAKALGYDYFLVSDDDYF 587          
BLAST of FC872828 vs. ExPASy Swiss-Prot
Match: THD1_SOLTU (Threonine dehydratase biosynthetic (Fragment) OS=Solanum tuberosum GN=TD PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.942e-18
Identity = 41/84 (48.81%), Postives = 57/84 (67.86%), Query Frame = 2
Query:    2 GRLSVENEVLCRFIFPERPGSLMKFLDAFSPRWNISLFHYRGQGETGANILVGIQVPENELAEFHGRANRLGYDYAVVTDDNNF 253
            G  S+ +E+   FIFPE+ G+L  FL+AFSPRWNI+L  YR QG+   N+LVG QVP++E+ EF  +A+ LGY Y +   +  F
Sbjct:  270 GSASISDEIFGEFIFPEKAGTLSTFLEAFSPRWNITLCRYRDQGDINGNVLVGFQVPQSEMDEFKSQADGLGYPYELDNSNEAF 353          
BLAST of FC872828 vs. ExPASy Swiss-Prot
Match: THD1_BURM1 (Threonine dehydratase biosynthetic OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=ilvA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.041e-16
Identity = 41/69 (59.42%), Postives = 50/69 (72.46%), Query Frame = 2
Query:   20 NEVLCRFIFPERPGSLMKFLDAFSPRWNISLFHYRGQGETGANILVGIQVPENELAEFHGRANRLGYDY 226
            +E L RF FPERPG+LMKFL + +P WNISLFHYR QG   ++ILVG+QVP+ + AEF      LGY Y
Sbjct:  425 DERLFRFEFPERPGALMKFLSSMAPDWNISLFHYRNQGADYSSILVGLQVPQADHAEFERFLAALGYPY 493          
BLAST of FC872828 vs. ExPASy Swiss-Prot
Match: THD1_SOLLC (Threonine dehydratase biosynthetic, chloroplastic OS=Solanum lycopersicum GN=TD PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.890e-16
Identity = 37/75 (49.33%), Postives = 53/75 (70.67%), Query Frame = 2
Query:    2 GRLSVENEVLCRFIFPERPGSLMKFLDAFSPRWNISLFHYRGQGETGANILVGIQVPENELAEFHGRANRLGYDY 226
            G  ++ +E+   FI PE+  +L  FLDAFSPRWNI+L  YR QG+  A++L+G QVP+ E+ EF  +A++LGY Y
Sbjct:  506 GSANISDEIFGEFIVPEKAETLKTFLDAFSPRWNITLCRYRNQGDINASLLMGFQVPQAEMDEFKNQADKLGYPY 580          
BLAST of FC872828 vs. ExPASy Swiss-Prot
Match: THDH_ARXAD (Threonine dehydratase, mitochondrial OS=Arxula adeninivorans GN=ILV1 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.488e-14
Identity = 39/77 (50.65%), Postives = 49/77 (63.64%), Query Frame = 2
Query:   14 VENEVLCRFIFPERPGSLMKFLDAFSPRWNISLFHYRGQGETGANILVGIQVPENELAEFHGRANRLGYDYAVVTDD 244
            V NE + RF FPERPG+L+KFL     +WNI+LFHYR QG   A +L GI VP +E  +F    + L Y YA  TD+
Sbjct:  464 VTNERVFRFEFPERPGALVKFLHGVKSKWNITLFHYRNQGSDIAKVLAGISVPSHESDQFQQFLDNLEYPYAEETDN 540          
BLAST of FC872828 vs. ExPASy Swiss-Prot
Match: THD1_HAEIN (Threonine dehydratase biosynthetic OS=Haemophilus influenzae GN=ilvA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.645e-14
Identity = 38/84 (45.24%), Postives = 50/84 (59.52%), Query Frame = 2
Query:    2 GRLSVENEVLCRFIFPERPGSLMKFLDAFSPRWNISLFHYRGQGETGANILVGIQVPENELAEFHGRANRLGYDYAVVTDDNNF 253
            GR + +NE L  F FPE+ G+L+KFL+    RWNISLFHYR  G    NIL G Q+ + E AEF     +L Y +  VT   ++
Sbjct:  425 GRAANDNERLYTFEFPEQKGALLKFLETLQNRWNISLFHYRAHGADYGNILAGFQIEQREQAEFEQGLAQLNYVFEDVTKSKSY 508          
BLAST of FC872828 vs. ExPASy Swiss-Prot
Match: THDH_YEAST (Threonine dehydratase, mitochondrial OS=Saccharomyces cerevisiae GN=ILV1 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 6.912e-12
Identity = 36/81 (44.44%), Postives = 43/81 (53.09%), Query Frame = 2
Query:    2 GRLSVENEVLCRFIFPERPGSLMKFLDAFSPRWNISLFHYRGQGETGANILVGIQVPENELAEFHGRANRLGYDYAVVTDD 244
            G   V NE +  F FPERPG+L +FL   S  WN++LFHYR  G     +L GI VP  E   F      LGY Y   TD+
Sbjct:  487 GASKVPNERIISFEFPERPGALTRFLGGLSDSWNLTLFHYRNHGADIGKVLAGISVPPRENLTFQKFLEDLGYTYHDETDN 567          
The following BLAST results are available for this feature:
BLAST of FC872828 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
THD1_ARATH1.750e-3173.81Threonine dehydratase biosynthetic, chloroplastic ... [more]
THD1_SOLTU4.942e-1848.81Threonine dehydratase biosynthetic (Fragment) OS=S... [more]
THD1_BURM16.041e-1659.42Threonine dehydratase biosynthetic OS=Burkholderia... [more]
THD1_SOLLC7.890e-1649.33Threonine dehydratase biosynthetic, chloroplastic ... [more]
THDH_ARXAD1.488e-1450.65Threonine dehydratase, mitochondrial OS=Arxula ade... [more]
THD1_HAEIN9.645e-1445.24Threonine dehydratase biosynthetic OS=Haemophilus ... [more]
THDH_YEAST6.912e-1244.44Threonine dehydratase, mitochondrial OS=Saccharomy... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAB3CH04ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3CH04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872828 ID=FC872828; Name=FC872828; organism=Citrus clementina; type=EST; length=776bp
GGGCAGATTAAGTGTTGAAAACGAGGTCCTTTGTCGTTTTATTTTCCCTG
AGCGGCCTGGTTCTTTGATGAAGTTCTTGGATGCTTTCAGTCCGCGTTGG
AATATTAGCTTGTTCCATTACCGTGGTCAGGGTGAAACTGGTGCCAACAT
ATTAGTAGGAATCCAGGTTCCAGAGAATGAGCTGGCTGAGTTTCACGGTC
GTGCCAACAGGCTTGGATATGATTATGCAGTTGTAACTGATGACAACAAC
TTCGAGCTTTTGATGCACTGATTAGAGCTTGTTGTGTGATATTAGCTCAG
TTGGATTGCACAAGTAGACACGCTCAATTAGTCAGAGAAAGAAAGGAAGA
GAGGAAGGAAAAGCGAAGGGCCTCTAGAATCTAGATACCCTTAATTAGTC
GAGAAGACGGGAATCACGTCTTCACTCGTGAGATGGTATTCCCTCCTAGT
TTGTATTTAATAATATTATGGTGTCATCTGCTCTCGGGAAGAGGCGGTGC
CTTTCTAGTTCTACGACTGTTCCATCTAATGTTTGACTTTTGATCTTCAG
CATAATGTACTTCACTACCTATGAAAACTTGAGCCTGATGGGCTTTGAGC
TTTTAGTGAAGTTCTACATTTAGATCGTAGCTCCTCCTGAAGATTTCATT
GGGTTAGTGATTTTTGTCGATACGATTTGTATCATTTGAGCTGTTGACAA
AAATAATTCCATTTATTAGTGTTTAAAAAAAAAAAAAAAAAAAAAAATAA
AAAAAAAAAAAAAAAAAAAAAAAAAA
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